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PR00232

Identifier
POTXCARLCOAT  [View Relations]  [View Alignment]  
Accession
PR00232
No. of Motifs
4
Creation Date
11-JUL-1994  (UPDATE 23-JUN-1999)
Title
Potex and carlavirus coat protein signature
Database References

PROSITE; PS00418 POTEX_CARLAVIRUS_COAT
BLOCKS; BL00418
PFAM; PF00286 virus_P-coat
INTERPRO; IPR000052
Literature References
1. SHORT, M.N., TURNER, D.S., MARCH, J.F., PAPPIN, D.J.C., PARENTE, A.
AND DAVIES, J.W.
The primary structure of papaya mosaic viurs coat protein.
VIROLOGY 152(1) 280-283 (1986).
 
2. SKRYABIN, K.G., KRAEV, A.S., MOROZOV, S.YU., ROZANOV, M.N.,
CHERNOV, B.K., LUKASHEVA, L.I. AND ATABEKOV, J.G.
The nucleotide sequence of potato viurs X RNA.
NUCLEIC ACIDS RES. 16 10929-10930 (1988).
 
3. MEMELINK, J., VAN DER VLUGT, C.I., LINTHORST, H.J., DERKS, A.F.,
ASJES, C.J. AND BOL, J.F.
Homologies between the genomes of a carlavirus (lily symptomless virus)
and a potexvirus (lily virus X) from lily plants.
J.GEN.VIROL. 71(4) 917-924 (1990).

Documentation
Potex viruses are encapsidated, single-stranded RNA plant viruses. The
group includes papaya mosaic virus [1], potato virus X [2] and lily virus
X [3]. Sequence comparison of potexvirus coat proteins with those of
carlaviruses (e.g., lily symptomless virus [3]) show considerable
similarity. The most highly conserved region of potex and carlavirus coat
proteins lies around the middle third of the sequences: this is a
relatively aromatic- and proline-rich region and contains a single
conserved cysteine residue.
 
POTXCARLCOAT is a 4-element fingerprint that provides a signature for the
potex virus coat protein. The fingerprint was derived from an initial
alignment of 6 sequences: the motifs were drawn from conserved regions
within the middle third of the alignment, motifs 3 and 4 spanning the
region encoded by PROSITE pattern POTEX_CARLAVIRUS_COAT (PS00418). Three
iterations on OWL23.2 were required to reach convergence, at which point a
true set comprising 38 sequences was identified. Several partial matches
were also found, all of which are family members.
 
An update on SPTR37_9f identified a true set of 84 sequences, and 10
partial matches.
Summary Information
  84 codes involving  4 elements
3 codes involving 3 elements
5 codes involving 2 elements
Composite Feature Index
484848484
33321
21342
1234
True Positives
COAT_CMVSI    COAT_CVB      COAT_CYMV     COAT_HELVS    
COAT_LSV COAT_LVX COAT_NMV COAT_P1AMV
COAT_PAMV COAT_PMV COAT_PVMG COAT_PVMR
COAT_PVSP COAT_PVX COAT_PVXHB COAT_PVXU3
COAT_PVXX3 COAT_PVXXC COAT_SHVX COAT_WCMVM
COAT_WCMVO O09502 O10691 O12299
O36985 O38023 O41483 O41485
O42052 O56076 O56077 O70711
O70713 O70715 O70717 O70719
O70721 O70723 O70726 O70727
O70728 O70729 O70730 O70731
O70733 O72342 O73511 O73513
O73524 O73526 O73530 O73561
O91634 O91727 O91904 O92527
P87725 P87728 Q64966 Q65978
Q66152 Q66156 Q66343 Q67658
Q67661 Q67687 Q67693 Q67697
Q67699 Q67701 Q83054 Q83089
Q84399 Q85109 Q85202 Q85240
Q85242 Q85244 Q85248 Q85255
Q86825 Q88458 Q89600 Q98623
True Positive Partials
Codes involving 3 elements
COAT_SMYEA O41280 O73528
Codes involving 2 elements
COAT_POPMV O37178 O73516 Q66339
Q89760
Sequence Titles
COAT_CMVSI  COAT PROTEIN (CAPSID PROTEIN) - CYMBIDIUM MOSAIC VIRUS (STRAIN SINGAPORE). 
COAT_CVB COAT PROTEIN (CAPSID PROTEIN) - CHRYSANTHEMUM VIRUS B (CVB).
COAT_CYMV COAT PROTEIN (CAPSID PROTEIN) - CLOVER YELLOW MOSAIC VIRUS (CYMV).
COAT_HELVS COAT PROTEIN (CAPSID PROTEIN) - HELENIUM VIRUS S (HELVS).
COAT_LSV COAT PROTEIN (CAPSID PROTEIN) - LILY SYMPTOMLESS VIRUS (LSV).
COAT_LVX COAT PROTEIN (CAPSID PROTEIN) - LILY VIRUS X.
COAT_NMV COAT PROTEIN (CAPSID PROTEIN) - NARCISSUS MOSAIC VIRUS (NMV).
COAT_P1AMV COAT PROTEIN (CAPSID PROTEIN) - PLANTAGO ASIATICA MOSAIC POTEXVIRUS (P1AMV).
COAT_PAMV COAT PROTEIN (CAPSID PROTEIN) - POTATO AUCUBA MOSAIC VIRUS (PAMV).
COAT_PMV COAT PROTEIN (CAPSID PROTEIN) - PAPAYA MOSAIC POTEXVIRUS (PMV).
COAT_PVMG COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS M (GERMAN ISOLATE) (PVM).
COAT_PVMR COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS M (STRAIN RUSSIAN) (PVM).
COAT_PVSP COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S (STRAIN PERUVIAN).
COAT_PVX COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
COAT_PVXHB COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (STRAIN HB) (PVX).
COAT_PVXU3 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (STRAIN UK3) (PVX).
COAT_PVXX3 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (STRAIN X3) (PVX).
COAT_PVXXC COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (STRAIN XC) (PVX).
COAT_SHVX COAT PROTEIN (CAPSID PROTEIN) - SHALLOT VIRUS X (SHVX).
COAT_WCMVM COAT PROTEIN (CAPSID PROTEIN) - WHITE CLOVER MOSAIC VIRUS (STRAIN M) (WCMV).
COAT_WCMVO COAT PROTEIN (CAPSID PROTEIN) - WHITE CLOVER MOSAIC VIRUS (STRAIN O) (WCMV).
O09502 COAT PROTEIN (CAPSID PROTEIN) - GARLIC VIRUS B.
O10691 COAT PROTEIN (CAPSID PROTEIN) - CYMBIDIUM MOSAIC VIRUS.
O12299 COAT PROTEIN (CAPSID PROTEIN) - GARLIC MITE-BORNE FILAMENTOUS VIRUS.
O36985 32KDA VIRAL COAT PROTEIN - LILY SYMPTOMLESS VIRUS (LSV).
O38023 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS M.
O41483 COAT PROTEIN - POTATO VIRUS S.
O41485 COAT PROTEIN - POTATO VIRUS S.
O42052 COAT PROTEIN (CAPSID PROTEIN) - CYMBIDIUM MOSAIC VIRUS.
O56076 COAT PROTEIN (CAPSID PROTEIN) - COWPEA MILD MOTTLE VIRUS.
O56077 COAT PROTEIN (CAPSID PROTEIN) - COWPEA MILD MOTTLE VIRUS.
O70711 COAT PROTEIN (CAPSID PROTEIN) - SHALLOT LATENT VIRUS.
O70713 COAT PROTEIN (CAPSID PROTEIN) - SHALLOT LATENT VIRUS.
O70715 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
O70717 COAT PROTEIN (CAPSID PROTEIN) - SHALLOT LATENT VIRUS.
O70719 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
O70721 COAT PROTEIN - GARLIC COMMON LATENT VIRUS.
O70723 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
O70726 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
O70727 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
O70728 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
O70729 COAT PROTEIN (CAPSID PROTEIN) - SHALLOT LATENT VIRUS.
O70730 COAT PROTEIN (CAPSID PROTEIN) - SHALLOT LATENT VIRUS.
O70731 COAT PROTEIN - GARLIC COMMON LATENT VIRUS.
O70733 COAT PROTEIN - GARLIC COMMON LATENT VIRUS.
O72342 COAT PROTEIN (CAPSID PROTEIN) - APRICOT LATENT VIRUS.
O73511 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S.
O73513 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S.
O73524 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S.
O73526 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S.
O73530 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S.
O73561 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS S.
O91634 COAT PROTEIN (CAPSID PROTEIN) - SOUR CHERRY GREEN RING MOTTLE VIRUS.
O91727 COAT PROTEIN (CAPSID PROTEIN) - GRAPEVINE RUPESTRIS STEM PITTING ASSOCIATED VIRUS.
O91904 COAT PROTEIN (CAPSID PROTEIN) - RUPESTRIS STEM PITTING ASSOCIATED VIRUS-1.
O92527 COAT PROTEIN (CAPSID PROTEIN) - CARNATION LATENT VIRUS (CLV).
P87725 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
P87728 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
Q64966 COAT PROTEIN (CAPSID PROTEIN) - APPLE STEM PITTING VIRUS.
Q65978 COAT PROTEIN - CASSAVA COMMON MOSAIC VIRUS.
Q66152 COAT PROTEIN - CYMBIDIUM MOSAIC VIRUS.
Q66156 COAT PROTEIN (CAPSID PROTEIN) - CYMBIDIUM MOSAIC VIRUS.
Q66343 COAT PROTEIN (CAPSID PROTEIN) - CLOVER YELLOW MOSAIC VIRUS (CYMV).
Q67658 COAT PROTEIN (CAPSID PROTEIN) - GARLIC LATENT VIRUS.
Q67661 COAT PROTEIN (CAPSID PROTEIN) - GARLIC MITE-BORNE MOSAIC VIRUS.
Q67687 COAT PROTEIN (CAPSID PROTEIN) - GARLIC VIRUS 1.
Q67693 COAT PROTEIN (CAPSID PROTEIN) - GARLIC VIRUS A.
Q67697 VIRAL COAT PROTEIN (ORF-V) - GARLIC VIRUS B.
Q67699 COAT PROTEIN (CAPSID PROTEIN) - GARLIC VIRUS C.
Q67701 VIRAL COAT PROTEIN (ORF-V) - GARLIC VIRUS D.
Q83054 COAT PROTEIN (CAPSID PROTEIN) - LILY SYMPTOMLESS VIRUS (LSV).
Q83089 COAT PROTEIN (CAPSID PROTEIN) - LILY SYMPTOMLESS VIRUS (LSV).
Q84399 COAT PROTEIN (CAPSID PROTEIN) - PEAR VEIN YELLOWS-ASSOCIATED VIRUS.
Q85109 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q85202 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q85240 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q85242 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q85244 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q85248 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q85255 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q86825 COAT PROTEIN (CAPSID PROTEIN) - POTATO AUCUBA MOSAIC VIRUS (PAMV).
Q88458 COAT PROTEIN (CAPSID PROTEIN) - SHALLOT VIRUS X (SHVX).
Q89600 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).
Q98623 COAT PROTEIN (CAPSID PROTEIN) - POTATO VIRUS X (PVX).

COAT_SMYEA COAT PROTEIN (CAPSID PROTEIN) - STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS (SMYEAV).
O41280 COAT PROTEIN (CAPSID PROTEIN) - STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS (SMYEAV).
O73528 COAT PROTEIN - POTATO VIRUS S.

COAT_POPMV COAT PROTEIN (CAPSID PROTEIN) - POPLAR MOSAIC VIRUS (ISOLATE ATCC PV275) (PMV).
O37178 COAT PROTEIN - BAMBOO MOSAIC VIRUS.
O73516 COAT PROTEIN - POTATO VIRUS S.
Q66339 COAT PROTEIN (CAPSID PROTEIN) - CLOVER YELLOW MOSAIC VIRUS (CYMV).
Q89760 ORF5=25K - BAMBOO MOSAIC VIRUS.
Scan History
OWL23_2    3  200  NSINGLE    
OWL28_0 1 200 NSINGLE
SPTR37_9f 2 300 NSINGLE
Initial Motifs
Motif 1  width=15
Element Seqn Id St Int Rpt
TLRQFCMKYAPVVWN COAT_PVX 122 122 -
TLRRVCRLYAPVTWN COAT_PVMG 191 191 -
PLRQFCRYYAKFVWN COAT_LVX 92 92 -
TPRQFCAYYAKVVWN COAT_CMVSI 109 109 -
TLRRFCRYFAKVIWN COAT_CYMV 97 97 -
TPRQFCMYFAKVVWN COAT_NMV 112 112 -

Motif 2 width=14
Element Seqn Id St Int Rpt
PPANWQAQGFKPEH COAT_PVX 144 7 -
PPAEWAAMGFQYED COAT_PVMG 213 7 -
PPANWADSQFPAEA COAT_LVX 114 7 -
PPANWAKAGFQEDT COAT_CMVSI 131 7 -
PPANWASQNYKEAD COAT_CYMV 119 7 -
PPAGWAKQGLPDDC COAT_NMV 134 7 -

Motif 3 width=11
Element Seqn Id St Int Rpt
KFAAFDFFNGV COAT_PVX 158 0 -
RFAPFDCFDYV COAT_PVMG 227 0 -
RFAAFDFFDGV COAT_LVX 128 0 -
RFAAFDFFDAV COAT_CMVSI 145 0 -
RFAAFDFFEGV COAT_CYMV 133 0 -
KFAGFDFFEGV COAT_NMV 148 0 -

Motif 4 width=12
Element Seqn Id St Int Rpt
VTNPAAIMPKEG COAT_PVX 168 -1 -
VENTAAVQPLEG COAT_PVMG 237 -1 -
VTNSAAPQPPDG COAT_LVX 138 -1 -
VDSTGALEPAEC COAT_CMVSI 155 -1 -
VSSSAALSPPGG COAT_CYMV 143 -1 -
VLSPAALDPADG COAT_NMV 158 -1 -
Final Motifs
Motif 1  width=15
Element Seqn Id St Int Rpt
TLRQFCRCYAPVVWN O70711 182 182 -
TLRQFCRCYAPVVWN O70713 182 182 -
TLRQFCRCYAPVVWN O70717 182 182 -
TLRQVCRCYAPVVWN O70715 185 185 -
TLRQVCRCYAPVVWN Q67658 183 183 -
TLRQVCRCYAPVVWN O70729 185 185 -
TLRQVCRCYAPVVWN O70728 185 185 -
TLRQVCRCYAPVVWN O70727 185 185 -
TLRQVCRCYAPVVWN O70726 185 185 -
TLRQVCRCYAPVVWN O70723 185 185 -
TLRQVCRCYAPVVWN O70730 185 185 -
TLRQFCKKYAPVVWN Q89600 121 121 -
TLRQFCKKYAPVVWN Q85242 121 121 -
TLRQFCKKYAPVVWN COAT_PVXXC 121 121 -
TLRQVCRCYAPVVWN P87725 185 185 -
TLRQVCRCYAPVVWN Q67687 185 185 -
KLRQFCRKYAPVVWN Q85202 121 121 -
KLRQFCRKYAPVVWN COAT_PVXHB 121 121 -
TSRQVCRCYAPVVWN O70719 185 185 -
TLRQFCMKYAPVVWN Q98623 122 122 -
TLRQFCMKYAPVVWN Q85255 122 122 -
TLRQFCMKYAPVVWN Q85248 122 122 -
TLRQFCMKYAPVVWN Q85244 122 122 -
TLRQFCMKYAPVVWN Q85240 122 122 -
TLRQFCMKYAPVVWN COAT_PVXX3 122 122 -
TLRQFCMKYAPVVWN COAT_PVXU3 122 122 -
TLRQFCMKYAPVVWN COAT_PVX 122 122 -
TVRQVCRVYAPVVWN P87728 185 185 -
TLRQFCMKYAPVVWM Q85109 122 122 -
GLRKVCRLYAPIVWN COAT_LSV 178 178 -
GLRKVCRLYAPIVWN Q83054 178 178 -
GLRKVCRLYAPIVWN Q83089 178 178 -
GLRKVCRLYAPVVWN COAT_PVSP 180 180 -
GLRKVCRLYAPVVWN O73524 181 181 -
GLRKVCRLYAPVVWN O73511 181 181 -
GLRKVCRLYAPVVWN O73513 181 181 -
GLRKVCRLYAPVVWN O73526 181 181 -
GLRKVCRLYAPVVWN O73530 181 181 -
GLRKVCRLYAPVVWN O73561 181 181 -
GLRKVCRLYAPIVWN O36985 178 178 -
TLRRVCRLYAPVTWN COAT_PVMR 191 191 -
TLRRVCRLYAPVTWN O38023 191 191 -
GLRKVCRLYAPVVWN O41483 181 181 -
GLRKVCRLYAPVVWN O41485 181 181 -
TLRRVCRLYAPVTWN O56077 176 176 -
TLRRVCRLYAPVTWN COAT_PVMG 191 191 -
TPRQFCAYYAKVVWN O42052 109 109 -
TPRQFCAYYAKVVWN O10691 109 109 -
TPRQFCAYYAKVVWN Q66156 109 109 -
TLRRVCRLYAPITWN O56076 176 176 -
PLRQFCRYYAKFVWN COAT_LVX 92 92 -
TLRAFCRAFAPVVWN O70733 205 205 -
TLRAFCRAFAPVVWN O70731 205 205 -
TLRAFCRAFAPITWN O92527 192 192 -
TLRRFCMYYAKIVWN O91727 145 145 -
TLRRFCMYYAKIVWN O91904 145 145 -
TLRKVCRLYAAVAWN COAT_CVB 200 200 -
TPRQFCAYYAKVVWN COAT_CMVSI 109 109 -
SLRSFCSKYAPVVWN O91634 155 155 -
GIRRVCRLYAPVTWN COAT_HELVS 184 184 -
TLRAFCRAFAPVVWN O70721 205 205 -
SPRQFCSYYAKIVWN Q86825 136 136 -
SPRQFCSYYAKIVWN COAT_PAMV 136 136 -
SLRKFCRYFAPIIWN COAT_PMV 102 102 -
TPRQFCAYYAKVVWN Q66152 109 109 -
TLRQYCAYYAKHVWN O72342 311 311 -
TIRQFCMYFANVVWN COAT_WCMVO 97 97 -
TLRQFCGFYAKTCYV Q67661 148 148 -
TLRRFCRYFAKVIWN Q66343 142 142 -
TLRRFCRYFAKVIWN COAT_CYMV 97 97 -
TLRQYCAFYAKHVWN Q84399 304 304 -
TLRQYCAFYAKHVWN Q64966 304 304 -
TIRQFCMYFANIVWN COAT_WCMVM 97 97 -
TLRQFCGYYAKTCYV O09502 132 132 -
TPRQFCMYFAKVVWN COAT_NMV 112 112 -
TLRQFCGFYAKTCYV Q67699 148 148 -
TLRQFCGFYAKACYV O12299 141 141 -
TLRQFCGFYAKACYV Q67693 140 140 -
TLRQFCRYYAKIIWN Q65978 114 114 -
TLRQFCGYYAKTCYV Q67697 133 133 -
TLRQFCSYYAKSCYV Q88458 151 151 -
TLRQFCSYYAKSCYV COAT_SHVX 151 151 -
TLRQFCGFYAKACYV Q67701 139 139 -
TLRKFCRFYAKIIWN COAT_P1AMV 92 92 -

Motif 2 width=14
Element Seqn Id St Int Rpt
PPANWDAKGFTENT O70711 204 7 -
PPANWDAKGFTENT O70713 204 7 -
PPANWDAKGFTENT O70717 204 7 -
PPANWDAKGFTENT O70715 207 7 -
PPANWDAKGFTENT Q67658 205 7 -
PPANWDAKGFTENT O70729 207 7 -
PPANWDAKGFTENT O70728 207 7 -
PPANWDAKGFTENT O70727 207 7 -
PPANWDAKGFTENT O70726 207 7 -
PPANWDAKGFTENT O70723 207 7 -
PPANWDAKGFTENT O70730 207 7 -
PPANWQAQGFKPEH Q89600 143 7 -
PPANWQAQGFKPEH Q85242 143 7 -
PPANWQAQGFKPEH COAT_PVXXC 143 7 -
PPANWDSKGFTENT P87725 207 7 -
PPANWDSKGFTENT Q67687 207 7 -
PPANWQAQGFKPEH Q85202 143 7 -
PPANWQAQGFKPEH COAT_PVXHB 143 7 -
PPANWDAKGFTENT O70719 207 7 -
PPANWQAQGFKPEH Q98623 144 7 -
PPANWQAQGFKPEH Q85255 144 7 -
PPANWQAQGFKPEH Q85248 144 7 -
PPANWQAQGFKPEH Q85244 144 7 -
PPANWQAQGFKPEH Q85240 144 7 -
PPANWQAQGFKPEH COAT_PVXX3 144 7 -
PPANWQAQGFKPEH COAT_PVXU3 144 7 -
PPANWQAQGFKPEH COAT_PVX 144 7 -
PPANWDAKGFTENT P87728 207 7 -
PPANWQAQGFKPEH Q85109 144 7 -
PPADWQAMGFQYNT COAT_LSV 200 7 -
PPADWQAMGFQYNT Q83054 200 7 -
PPADWQAMGFQYNT Q83089 200 7 -
PPSDWQAMGFQWNA COAT_PVSP 202 7 -
PPSDWQAMGFQWNA O73524 203 7 -
PPSDWQAMGFQWNA O73511 203 7 -
PPSDWQAMGFQWNA O73513 203 7 -
PPSDWQAMGFQWNA O73526 203 7 -
PPSDWQAMGFQWNA O73530 203 7 -
PPSDWQAMGFQWNA O73561 203 7 -
PPADWQAMGFQYNT O36985 200 7 -
PPADWAAMGFQYED COAT_PVMR 213 7 -
PPADWAAMGFQYED O38023 213 7 -
PPSDWQAMGFQWNA O41483 203 7 -
PPSDWQAMGFQWNA O41485 203 7 -
PPSDWAAMGFKYAD O56077 198 7 -
PPAEWAAMGFQYED COAT_PVMG 213 7 -
PPANWAKAGFQEDT O42052 131 7 -
PPANWAKAGFQEDT O10691 131 7 -
PPANWAKAGFQEDT Q66156 131 7 -
PPSDWAAMGFKYSD O56076 198 7 -
PPANWADSQFPAEA COAT_LVX 114 7 -
PPAGWQAKGYTTST O70733 227 7 -
PPAGWQTKGYTAST O70731 227 7 -
PPENWQAKGYTYET O92527 214 7 -
PPANWAKKGFNENE O91727 167 7 -
PPANWAKKGFNENE O91904 167 7 -
PPSDWSAMGFHPNV COAT_CVB 222 7 -
PPANWAKAGFQEDT COAT_CMVSI 131 7 -
PPANWQRRKVVEGA O91634 177 7 -
PPSDWASMGFAPNV COAT_HELVS 206 7 -
PPTGWQTKGYTAST O70721 227 7 -
PPANWAKIGFKEDY Q86825 158 7 -
PPANWAKIGFKEDY COAT_PAMV 158 7 -
APANWEASGYKPSA COAT_PMV 123 6 -
PPANWAKAGFQEDT Q66152 131 7 -
PPANWVGKEFKFEA O72342 333 7 -
PPASWSKLGYKEES COAT_WCMVO 119 7 -
PPANWARKGFQDES Q67661 170 7 -
PPANWASQNYKEAD Q66343 164 7 -
PPANWASQNYKEAD COAT_CYMV 119 7 -
PPANWVGKEFKFET Q84399 326 7 -
PPANWVGKEFKFET Q64966 326 7 -
PPASWSKLGYKEES COAT_WCMVM 119 7 -
PPANWSRKGFQEES O09502 154 7 -
PPAGWAKQGLPDDC COAT_NMV 134 7 -
LPANWARKGFQDES Q67699 170 7 -
PPANWSRKGYQEDS O12299 163 7 -
PPANWSRKGYQEDS Q67693 162 7 -
PPAGYANAHIKPEQ Q65978 136 7 -
PPSNWSRKGFQEES Q67697 155 7 -
PPANWSRKGYPEEA Q88458 173 7 -
PPANWSRKGYPEEA COAT_SHVX 173 7 -
PPASWSRKGYQDDA Q67701 161 7 -
PPAGFARANIKFEH COAT_P1AMV 114 7 -

Motif 3 width=11
Element Seqn Id St Int Rpt
KYAAFDTFDAV O70711 218 0 -
KYAAFDTFDAV O70713 218 0 -
KYAAFDTFDAV O70717 218 0 -
KYAAFDTFDAV O70715 221 0 -
KYAAFDTFDAV Q67658 219 0 -
KYAAFDTFDAV O70729 221 0 -
KYAAFDTFDAV O70728 221 0 -
KYAAFDTFDAV O70727 221 0 -
KYAAFDTFDAV O70726 221 0 -
KYAAFDTFDAV O70723 221 0 -
KYAAFDTFDAV O70730 221 0 -
KFAAFDFFDGV Q89600 157 0 -
KFAAFDFFDGV Q85242 157 0 -
KFAAFDFFDGV COAT_PVXXC 157 0 -
KYAAFDTFDAV P87725 221 0 -
KYAAFDTFDAV Q67687 221 0 -
KFAAFDFFDGV Q85202 157 0 -
KFAAFDFFDGV COAT_PVXHB 157 0 -
KYAAFDTFDAV O70719 221 0 -
KFAAFDFFNGV Q98623 158 0 -
KFAAFDFFNGV Q85255 158 0 -
KFAAFDFFNGV Q85248 158 0 -
KFAAFDFFNGV Q85244 158 0 -
KFAAFDFFNGV Q85240 158 0 -
KFAAFDFFNGV COAT_PVXX3 158 0 -
KFAAFDFFNGV COAT_PVXU3 158 0 -
KFAAFDFFNGV COAT_PVX 158 0 -
KYAAFDTFDAV P87728 221 0 -
KFAAFDFFNGV Q85109 158 0 -
RFAAFDTFDYV COAT_LSV 214 0 -
RFAAFDTFDYV Q83054 214 0 -
RFAAFDTFDYV Q83089 214 0 -
RFAAFDTFDYV COAT_PVSP 216 0 -
RFAAFDTFDYV O73524 217 0 -
RFAAFDTFDYV O73511 217 0 -
RFAAFDTFDYV O73513 217 0 -
RFAAFDTFDYV O73526 217 0 -
RFAAFDTFDYV O73530 217 0 -
RFAAFDTFDYV O73561 217 0 -
RFAAFDTLDYV O36985 214 0 -
RFAAFDCFDYV COAT_PVMR 227 0 -
RFAAFDCFDYV O38023 227 0 -
RCAAFDTFDYV O41483 217 0 -
RCAAFDTFDYV O41485 217 0 -
RYAAFDCFDYV O56077 212 0 -
RFAPFDCFDYV COAT_PVMG 227 0 -
RFAAFDFFDAV O42052 145 0 -
RFAAFDFFDAV O10691 145 0 -
RFAAFDFFDAV Q66156 145 0 -
RYAAFDCFDYV O56076 212 0 -
RFAAFDFFDGV COAT_LVX 128 0 -
KYAAFDTFDYV O70733 241 0 -
KFAAFDTFDYV O70731 241 0 -
RYAAFDVFDFV O92527 228 0 -
KFAAFDFFLGV O91727 181 0 -
KFAAFDFFLGV O91904 181 0 -
KYAAFDFFDYV COAT_CVB 236 0 -
RFAAFDFFDAV COAT_CMVSI 145 0 -
KFAAFDFFEAV O91634 191 0 -
KYAAFDCFDYV COAT_HELVS 220 0 -
KYAAFDTFDYV O70721 241 0 -
KFAAFDFFDAV Q86825 172 0 -
KFAAFDFFDAV COAT_PAMV 172 0 -
KFAAFDFFDGV COAT_PMV 137 0 -
RFAAFDFLDAV Q66152 145 0 -
RYAAFDFFFGV O72342 347 0 -
KFAGFDFFDGV COAT_WCMVO 133 0 -
KFAAFDFFNAV Q67661 184 0 -
RFAAFDFFEGV Q66343 178 0 -
RFAAFDFFEGV COAT_CYMV 133 0 -
RYAAFDFFFGV Q84399 340 0 -
RYAAFDFFFGV Q64966 340 0 -
KFAGFDFFDGV COAT_WCMVM 133 0 -
KFAAFDFFNAV O09502 168 0 -
KFAGFDFFEGV COAT_NMV 148 0 -
KFAAFDFFNAV Q67699 184 0 -
KFAAFDFFNAV O12299 177 0 -
KFAAFDFFNAV Q67693 176 0 -
AFAGFDFFDGV Q65978 150 0 -
KFSAFDFFNAV Q67697 169 0 -
KFAGFDFFNAV Q88458 187 0 -
KFAGFDFFNAV COAT_SHVX 187 0 -
KFAGFDFFNAV Q67701 175 0 -
RWAGFDFFDGL COAT_P1AMV 128 0 -

Motif 4 width=12
Element Seqn Id St Int Rpt
VTNKAAIQPLEG O70711 228 -1 -
VTNKAAIQPLEG O70713 228 -1 -
VTNKAAIQPLEG O70717 228 -1 -
VTNKAAIQPLEG O70715 231 -1 -
VTNKAAIQPLEG Q67658 229 -1 -
VTNKAAIQPLEG O70729 231 -1 -
VTNKAAIQPLEG O70728 231 -1 -
VTNKAAIQPLEG O70727 231 -1 -
VTNKAAIQPLEG O70726 231 -1 -
VTNKAAIQPLEG O70723 231 -1 -
VTNQAAIQPLEG O70730 231 -1 -
VTNPAAITPKEG Q89600 167 -1 -
VTNPAAITPKEG Q85242 167 -1 -
VTNPAAITPKEG COAT_PVXXC 167 -1 -
VTNKAAIQPLEG P87725 231 -1 -
VTNKAAIQPLEG Q67687 231 -1 -
VTNPAAITPKEG Q85202 167 -1 -
VTNPAAITPKEG COAT_PVXHB 167 -1 -
VTNKAAIQPLEG O70719 231 -1 -
VTNPAAIMPKEG Q98623 168 -1 -
VTNPAAIMPKEG Q85255 168 -1 -
VTNPAAIMPKEG Q85248 168 -1 -
VTNPAAIMPKEG Q85244 168 -1 -
VTNPAAIMPKEG Q85240 168 -1 -
VTNPAAIMPKEG COAT_PVXX3 168 -1 -
VTNPAAIMPKEG COAT_PVXU3 168 -1 -
VTNPAAIMPKEG COAT_PVX 168 -1 -
VTNKAAIQPLEG P87728 231 -1 -
VTNPAAIMPKEG Q85109 168 -1 -
VTNQAAIQPVEG COAT_LSV 224 -1 -
VTNQAAIQPVEG Q83054 224 -1 -
VTNQAAIQPVEG Q83089 224 -1 -
VTNGAAIQPVEG COAT_PVSP 226 -1 -
VTNGAAIQPVEG O73524 227 -1 -
VTNGAAVQPVEG O73511 227 -1 -
VTNGAAVQPVEG O73513 227 -1 -
VTNGAAVQPVEG O73526 227 -1 -
VTNGAAVQPVEG O73530 227 -1 -
VTNGAAVQPVEG O73561 227 -1 -
VTNQAAIQPVEG O36985 224 -1 -
VENTAAVQPLEG COAT_PVMR 237 -1 -
VENTAAVQPLEG O38023 237 -1 -
VTNGAAIQPVEG O41483 227 -1 -
VTNGAAVQPIEG O41485 227 -1 -
VENPAAIQPAEG O56077 222 -1 -
VENTAAVQPLEG COAT_PVMG 237 -1 -
VDSTAALEPAEW O42052 155 -1 -
VDSTAALEPAEW O10691 155 -1 -
VDSTAALEPAEC Q66156 155 -1 -
VENPAAIQPAEG O56076 222 -1 -
VTNSAAPQPPDG COAT_LVX 138 -1 -
VLNSACVQPLEG O70733 251 -1 -
VLNSACVQPLEG O70731 251 -1 -
VQNPAAIQPLEG O92527 238 -1 -
VTDESALEPKGG O91727 191 -1 -
VTDESALEPKGG O91904 191 -1 -
VENGAAIRPSGG COAT_CVB 246 -1 -
VDSTGALEPAEC COAT_CMVSI 155 -1 -
VTSEAALQPVEG O91634 201 -1 -
VENPAAVQPLGG COAT_HELVS 230 -1 -
VLNSACVQPLEG O70721 251 -1 -
VDSPAALEPSQW Q86825 182 -1 -
VDSPAALEPSQW COAT_PAMV 182 -1 -
VENPAAMQPPSG COAT_PMV 147 -1 -
VDSTGAVEPAEC Q66152 155 -1 -
VESSAALEPADG O72342 357 -1 -
VNHPAALMPADG COAT_WCMVO 143 -1 -
VSSDSAPNPPGG Q67661 194 -1 -
VSSSAALSPPGG Q66343 188 -1 -
VSSSAALSPPGG COAT_CYMV 143 -1 -
VESTASLEPADG Q84399 350 -1 -
VESTASLEPADG Q64966 350 -1 -
VNHPAALMPADG COAT_WCMVM 143 -1 -
VMSDSSPTPPGG O09502 178 -1 -
VLSPAALDPADG COAT_NMV 158 -1 -
VSSDSAPNPPGG Q67699 194 -1 -
VLSDSSPNPPGG O12299 187 -1 -
VLSDSSPSPPGG Q67693 186 -1 -
VMNVAALEPSGG Q65978 160 -1 -
VLNDSSPAPPGG Q67697 179 -1 -
VLSESSPAPPGG Q88458 197 -1 -
VLSESSPAPPGG COAT_SHVX 197 -1 -
VLSDFSPAPPGG Q67701 185 -1 -
LLNPAALEPPGG COAT_P1AMV 138 -1 -