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PR01302

Identifier
TYPE3IMPPROT  [View Relations]  [View Alignment]  
Accession
PR01302
No. of Motifs
6
Creation Date
13-MAR-2000
Title
Type III secretion system inner membrane P protein family signature
Database References
PRINTS; PR00951 FLGBIOSNFLIP
PROSITE; PS01060 FLIP_1; PS01061 FLIP_2
BLOCKS; BL01060
PFAM; PF0081 FliP
Literature References
1. MECSAS, J. AND STRAUSS, E.J.
Molecular mechanisms of bacterial virulence: type III secretion and 
pathogenicity islands.
EMERG.INFECT.DIS. 2 271-288 (1996).
 
2. GALAN, J. AND COLLMER, A.
Type III secretion machines; bacterial devices for protein delivery into
host cells.
SCIENCE 284 1322-1328 (1999).
 
3. KOMORIYA, K., SHIBANO, N., HIGANO, T., AZUMA, N., YAMAGUCHI, S.
AND AIZAWA, S.
Flagellar proteins and type III-exported virulence factors are the 
predominant proteins secreted into the culture media of Salmonella 
typhimurium.
MOL.MICROBIOL. 34 767-779 (1999).
 
4. HUECK, C.J.
Type III protein secretion systems in bacterial pathogens of animals and 
plants.
MICROBIOL.MOL.BIOL.REV. 379-433 (1998).

Documentation
Secretion of virulence factors in Gram-negative bacteria involves 
transportation of the protein across two membranes to reach the cell 
exterior [1]. There have been four secretion systems described in 
animal enteropathogens such as Salmonella and Yersinia, with further 
sequence similarities in plant pathogens like Ralstonia and Erwinia [1]. 
 
The type III secretion system is of great interest as it is used to 
transport virulence factors from the pathogen directly into the host cell 
[2] and is only triggered when the bacterium comes into close contact with
the host. The protein subunits of the system are very similar to those of 
bacterial flagellar biosynthesis [3]. However, while the latter forms a
ring structure to allow secretion of flagellin and is an integral part of
the flagellum itself [3], type III subunits in the outer membrane
translocate secreted proteins through a channel-like structure.
 
It is believed that the family of type III inner membrane proteins are 
used as structural moieties in a complex with several other subunits [4], 
including the ATPase necessary for driving the secretion system. One such
set of inner membrane proteins, termed "P" here for nomenclature purposes,
includes the Salmonella and Shigella SpaP, the Yersinia YscR, the Erwinia 
HrcR, and the Xanthamonas Pro2 genes [4], as well as several FliP flagellar 
biosynthesis genes [3]. FliP is an ~30Kd protein containing three or four
transmembrane (TM) regions.
 
TYPE3IMPPROT is a 6-element fingerprint that provides a signature for the
type III secretion system inner membrane P protein family. The fingerprint
was derived from an initial alignment of 5 sequences: the motifs were drawn
from conserved regions spanning the full alignment length (~260 amino acids)
- motif 1 includes the first putative TM region; motif 3 spans TM domain 2;
motifs 4 and 5 span TM domain 3; and motif 6 includes the C-terminal portion
of TM domain 4. Two iterations on SPTR37_10f were required to reach
convergence, at which point a true set comprising 35 sequences was 
identified.
Summary Information
30 codes involving  6 elements
0 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
6303030303030
5000000
4000000
3000000
2000000
123456
True Positives
FLIP_AGRTU    FLIP_BACSU    FLIP_BORBU    FLIP_CAUCR    
FLIP_ECOLI FLIP_ERWCA FLIP_RHIME FLIP_SALTY
FLIP_TREPA HRCR_ERWAM HRCR_ERWHE HRPT_BURSO
HRPW_PSESY O52127 O67750 O84566
O85095 O85133 O85642 P72275
PRO2_XANCG Q57175 Q57420 Q57515
SPAP_SALTI SPAP_SALTY SPAP_SHIFL Y4YL_RHISN
YSCR_SALTY YSCR_YERPS
Sequence Titles
FLIP_AGRTU  FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - AGROBACTERIUM TUMEFACIENS. 
FLIP_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - BACILLUS SUBTILIS.
FLIP_BORBU FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - BORRELIA BURGDORFERI (LYME DISEASE SPIROCH
FLIP_CAUCR FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - CAULOBACTER CRESCENTUS.
FLIP_ECOLI FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - ESCHERICHIA COLI.
FLIP_ERWCA FLAGELLAR BIOSYNTHETIC PROTEIN FLIP (FLAGELLAR BIOSYNTHETIC PROTEIN MOPC) - ERWI
FLIP_RHIME FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - RHIZOBIUM MELILOTI.
FLIP_SALTY FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - SALMONELLA TYPHIMURIUM.
FLIP_TREPA FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - TREPONEMA PALLIDUM.
HRCR_ERWAM HARPIN SECRETION PROTEIN HRCR - ERWINIA AMYLOVORA.
HRCR_ERWHE HARPIN SECRETION PROTEIN HRCR - ERWINIA HERBICOLA.
HRPT_BURSO HYPERSENSITIVITY RESPONSE SECRETION PROTEIN HRPT - BURKHOLDERIA SOLANACEARUM (PS
HRPW_PSESY HARPIN SECRETION PROTEIN HRPW - PSEUDOMONAS SYRINGAE (PV. SYRINGAE).
O52127 ESCR - ESCHERICHIA COLI.
O67750 FLAGELLAR BIOSYNTHETIC PROTEIN FLIP - AQUIFEX AEOLICUS.
O84566 YOP TRANSLOCATION R - CHLAMYDIA TRACHOMATIS.
O85095 HRCR - PSEUDOMONAS SYRINGAE (PV. PHASEOLICOLA).
O85133 FLAGELLAR PROTEIN FLIP - RHODOBACTER SPHAEROIDES (RHODOPSEUDOMONAS SPHAEROIDES).
O85642 L0049 - ESCHERICHIA COLI.
P72275 NODULATION PROTEIN (NOLX, NOLW, NOLB, NOLT, NOLU, NOLV), PUTATIVE ATPASE (HRCN),
PRO2_XANCG PATHOGENICITY-RELATED ORF2 - XANTHOMONAS CAMPESTRIS (PV. GLYCINES).
Q57175 SPAP - SALMONELLA TYPHIMURIUM.
Q57420 SPAP - SALMONELLA TYPHIMURIUM.
Q57515 SPAP - SALMONELLA TYPHIMURIUM.
SPAP_SALTI SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAP - SALMONELLA TYPHI.
SPAP_SALTY SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAP - SALMONELLA TYPHIMURIUM.
SPAP_SHIFL SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAP (SPA24 PROTEIN) - SHIGELLA FLEXNER
Y4YL_RHISN PROBABLE TRANSLOCATION PROTEIN Y4YL - RHIZOBIUM SP. (STRAIN NGR234).
YSCR_SALTY VIRULENCE PROTEIN YSCR - SALMONELLA TYPHIMURIUM.
YSCR_YERPS YOP PROTEINS TRANSLOCATION PROTEIN R - YERSINIA PSEUDOTUBERCULOSIS, AND YERSINIA
Scan History
SPTR37_10f 2  100  NSINGLE    
Initial Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
LVFITSLTFLPAILLMMTSF FLIP_SALTY 45 45 -
LVFITSLTFIPAILLMMTSF FLIP_ECOLI 45 45 -
VGLMTVLSLAPSIVIMTTSF FLIP_CAUCR 62 62 -
LLLLTVFSVAPGILILMTCF FLIP_BACSU 23 23 -
LLLLTLISLAPSILLLMTAF FLIP_TREPA 70 70 -
LILLTIITLSPAFLVLMTSF FLIP_BORBU 52 52 -
FGLLTVLSVAPGILIMVTSF FLIP_AGRTU 44 44 -
FGLLTVLSVAPGILIMVTSF FLIP_RHIME 44 44 -

Motif 2 width=21
Element Seqn Id St Int Rpt
FTRIIIVFGLLRNALGTPSAP FLIP_SALTY 64 -1 -
FTRIIIVFGLLRNALGTPSAP FLIP_ECOLI 64 -1 -
FVRIVVVLGLLRTAIGVQQSP FLIP_CAUCR 81 -1 -
FTRIVIVLSFVRTSLATQSMP FLIP_BACSU 42 -1 -
FLRLSIVLDFIKRALSLQQVP FLIP_TREPA 89 -1 -
FLRISIVLDFIRRALSLQQSP FLIP_BORBU 71 -1 -
FPRFVIAFSILRSGMGLASTP FLIP_AGRTU 63 -1 -
FPRFVMPFAILRSGMGLATTP FLIP_RHIME 63 -1 -

Motif 3 width=20
Element Seqn Id St Int Rpt
PPNQVLLGLALFLTFFIMSP FLIP_SALTY 84 -1 -
PPNQVLLGLALFLTFFIMSP FLIP_ECOLI 84 -1 -
PPNPVLISLALFLTAIVMAP FLIP_CAUCR 101 -1 -
PPNQVLIGLALFLTFFIMAP FLIP_BACSU 62 -1 -
PPTQVLHGIALFLALFIMWP FLIP_TREPA 109 -1 -
PPTQIVMGLALFLTIFTMWP FLIP_BORBU 91 -1 -
PSNMILLSMAMFMTFYVMSP FLIP_AGRTU 83 -1 -
PSNMIMVSLALFMTFYVMAP FLIP_RHIME 83 -1 -

Motif 4 width=21
Element Seqn Id St Int Rpt
PAYVTSELKTAFQIGFTIFIP FLIP_SALTY 172 68 -
PAYVTSELKTAFQIGFTIFIP FLIP_ECOLI 172 68 -
PAFMISELKRAFEIGFLLFIP FLIP_CAUCR 189 68 -
PAFAISELKTAFQIGFMIFIP FLIP_BACSU 150 68 -
PAFILHELTVAFQIGIFLYLP FLIP_TREPA 199 70 -
AAFILHELKVAFKMGILIFLP FLIP_BORBU 182 71 -
PAFMLSEIRRGFEIGFLIILP FLIP_AGRTU 173 70 -
PAFMISEIRRGFEIGFLIMLP FLIP_RHIME 173 70 -

Motif 5 width=22
Element Seqn Id St Int Rpt
FLIIDLVIASVLMALGMMMVPP FLIP_SALTY 193 0 -
FLIIDLVIASVLMALGMMMVPP FLIP_ECOLI 193 0 -
FLVIDLVVASVLMSMGMMMLPP FLIP_CAUCR 210 0 -
FLIIDMVVASVLMSMGMMMLPP FLIP_BACSU 171 0 -
FIIVDMVVASILMSMGMIMLPP FLIP_TREPA 220 0 -
FIVLDIIVASVLMAMGMIMLPP FLIP_BORBU 203 0 -
FLVIDLIVATITMAMGMMMLPP FLIP_AGRTU 194 0 -
FLVIDLIVATITMAMGMMMLPP FLIP_RHIME 194 0 -

Motif 6 width=26
Element Seqn Id St Int Rpt
IALPFKLMLFVLVDGWQLLMGSLAQS FLIP_SALTY 217 2 -
IALPFKLMLFVLVDGWQLLVGSLAQS FLIP_ECOLI 217 2 -
ISLPFKLIFFVLVDGWRLVAGSLVES FLIP_CAUCR 234 2 -
ISLPFKILLFVLVDGWYLIVKSLLQS FLIP_BACSU 195 2 -
ISLPFKLVLFVLVDGWNLLIDRLFHS FLIP_TREPA 244 2 -
ISLPFKLILFVMVDGWTLITSGLIKS FLIP_BORBU 227 2 -
ISLPFKILFFVLIDGWNLLVGSLVRS FLIP_AGRTU 218 2 -
ISLPFKILFFVLIDGWNLLVGSLVRS FLIP_RHIME 218 2 -
Final Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
IALLAFSTLLPFIIASGTCF Q57420 8 8 -
IALLAFSTLLPFIIASGTCF Q57175 8 8 -
IALLAFSTLLPFIIASGTCF Q57515 8 8 -
IALLAFSTLLPFIIASGTCF SPAP_SALTY 8 8 -
IALLAFSTLLPFIIASGTCF SPAP_SALTI 8 8 -
IIVLSLLTLLPLISVMATSF YSCR_YERPS 11 11 -
LVLLTSLTFLPAALLMMTSF FLIP_ERWCA 58 58 -
LVFITSLTFLPAILLMMTSF FLIP_SALTY 45 45 -
ALFLGSLSLIPFLLIVCTAF HRPW_PSESY 3 3 -
ALFLGSLSLIPFLLIVCTAF O85095 3 3 -
LVFITSLTFIPAILLMMTSF FLIP_ECOLI 45 45 -
ALFLGALSLIPMLMIVCTCF HRCR_ERWAM 12 12 -
LALMTALTVLPSLVLGMSAF O85133 100 100 -
VGLMTVLSLAPSIVIMTTSF FLIP_CAUCR 62 62 -
ALFLGALSLIPILMIVCTCF HRCR_ERWHE 12 12 -
IATLSFFTLLPFLVAAGTCY SPAP_SHIFL 8 8 -
IIVFFLLSLLPIFVVIGTSF O52127 15 15 -
IIVFFLLSLLPIFVVIGTSF O85642 15 15 -
LAITAALGLLVLAVVTTTAF P72275 39 39 -
LAITAALGLLVLAVVTTTAF Y4YL_RHISN 12 12 -
IGILFLLSILPLIIVMGTSF YSCR_SALTY 11 11 -
LLLLTVFSVAPGILILMTCF FLIP_BACSU 23 23 -
LVVVIMLGLLPFAAMVVTSY PRO2_XANCG 11 11 -
LLLLTLISLAPSILLLMTAF FLIP_TREPA 70 70 -
LIFLTILSLVPSILIMFTSF O67750 38 38 -
AVILLFLALSPFLVMLLTSY O84566 92 92 -
LILLTIITLSPAFLVLMTSF FLIP_BORBU 52 52 -
IVMAVAIALLPFAAMVVTSY HRPT_BURSO 10 10 -
FGLLTVLSVAPGILIMVTSF FLIP_AGRTU 44 44 -
FGLLTVLSVAPGILIMVTSF FLIP_RHIME 44 44 -

Motif 2 width=21
Element Seqn Id St Int Rpt
FVKFSIVFVMVRNALGLQQIP Q57420 27 -1 -
FVKFSIVFVMVRNALGLQQIP Q57175 27 -1 -
FVKFSIVFVMVRNALGLQQIP Q57515 27 -1 -
FVKFSIVFVMVRNALGLQQIP SPAP_SALTY 27 -1 -
FVKFSIVFVMVRNALGLQQIP SPAP_SALTI 27 -1 -
FVKFAVVFSLLRNALGVQQIP YSCR_YERPS 30 -1 -
FTRIIIVLSLLRNALGTPTAP FLIP_ERWCA 77 -1 -
FTRIIIVFGLLRNALGTPSAP FLIP_SALTY 64 -1 -
FLKIAMTLLITRNAIGVQQVP HRPW_PSESY 22 -1 -
FLKIAMTLLITRNAIGVQQVP O85095 22 -1 -
FTRIIIVFGLLRNALGTPSAP FLIP_ECOLI 64 -1 -
FLKISMVLLITRNAIGVQQVP HRCR_ERWAM 31 -1 -
FTRIIIVLSILRQALGTQQTP O85133 119 -1 -
FVRIVVVLGLLRTAIGVQQSP FLIP_CAUCR 81 -1 -
FLKISMVLLITRNAIGVQQVP HRCR_ERWHE 31 -1 -
YIKFSIVFVMVRNALGLQQVP SPAP_SHIFL 27 -1 -
FLKISIVLGILKNALGIQQVP O52127 34 -1 -
FLKISIVLGILKNALGIQQVP O85642 34 -1 -
FVKVSVVLFLVRNALGTQTIP P72275 58 -1 -
FVKVSVVLFLVRNALGTQTIP Y4YL_RHISN 31 -1 -
FLKLAVVFSILRNALGIQQVP YSCR_SALTY 30 -1 -
FTRIVIVLSFVRTSLATQSMP FLIP_BACSU 42 -1 -
YTKIVVVLGLLRNAIGVQQVP PRO2_XANCG 30 -1 -
FLRLSIVLDFIKRALSLQQVP FLIP_TREPA 89 -1 -
FTRLVVVLSLLRQAIGTPQAP O67750 57 -1 -
YLKIIITLVLLRNALGVQQTP O84566 111 -1 -
FLRISIVLDFIRRALSLQQSP FLIP_BORBU 71 -1 -
YTKIVVVLGLLRNALGVQQVP HRPT_BURSO 29 -1 -
FPRFVIAFSILRSGMGLASTP FLIP_AGRTU 63 -1 -
FPRFVMPFAILRSGMGLATTP FLIP_RHIME 63 -1 -

Motif 3 width=20
Element Seqn Id St Int Rpt
PSNMTLNGIALLLSMFVMWP Q57420 47 -1 -
PSNMTLNGVALLLSMFVMWP Q57175 47 -1 -
PSNMTLNGVALLLSMFVMWP Q57515 47 -1 -
PSNMTLNGVALLLSMFVMWP SPAP_SALTY 47 -1 -
PSNMTLNSVALLLSMFVMWP SPAP_SALTI 47 -1 -
PPNMAMYGLAIILSLYVMAP YSCR_YERPS 50 -1 -
PPNQVLLGLTLFLTFFVMSP FLIP_ERWCA 97 -1 -
PPNQVLLGLALFLTFFIMSP FLIP_SALTY 84 -1 -
PPNMALYGIALAATMFVMAP HRPW_PSESY 42 -1 -
PPNMALYGIALAATMFVMAP O85095 42 -1 -
PPNQVLLGLALFLTFFIMSP FLIP_ECOLI 84 -1 -
PPNMALYGIALAATLFVMSP HRCR_ERWAM 51 -1 -
PPNQVLIALALFLTFFVMQP O85133 139 -1 -
PPNPVLISLALFLTAIVMAP FLIP_CAUCR 101 -1 -
PPNMALYGIALAATLFVMAP HRCR_ERWHE 51 -1 -
PSNMTLNGIALIMALFVMKP SPAP_SHIFL 47 -1 -
PPNMALTSVSLILTMFIMSP O52127 54 -1 -
PPNMALTSVSLILTMFIMSP O85642 54 -1 -
PPNIVLYAAALILTMFVSAP P72275 78 -1 -
PPNIVLYAAALILTMFVSAP Y4YL_RHISN 51 -1 -
PPNIALYGLALVLSLFIMGP YSCR_SALTY 50 -1 -
PPNQVLIGLALFLTFFIMAP FLIP_BACSU 62 -1 -
PPNMVLNGVALLVSCFVMAP PRO2_XANCG 50 -1 -
PPTQVLHGIALFLALFIMWP FLIP_TREPA 109 -1 -
PPNQVIIALSLFLTFFIMKP O67750 77 -1 -
PPSQVLNGIALILSIYVMFP O84566 131 -1 -
PPTQIVMGLALFLTIFTMWP FLIP_BORBU 91 -1 -
PPNMVLNGIAMIVSCFVMAP HRPT_BURSO 49 -1 -
PSNMILLSMAMFMTFYVMSP FLIP_AGRTU 83 -1 -
PSNMIMVSLALFMTFYVMAP FLIP_RHIME 83 -1 -

Motif 4 width=21
Element Seqn Id St Int Rpt
PAYALSEIKSAFKIGFYLYLP Q57420 148 81 -
PAYALSEIKSAFKIGFYLYLP Q57175 148 81 -
PAYALSEIKSAFKIGFYLYLP Q57515 148 81 -
PAYALSEIKSAFKIGFYLYLP SPAP_SALTY 148 81 -
PAYALSEIKSAFKIGFYLYLP SPAP_SALTI 148 81 -
PAFTVSELTRAFEIGFLIYLP YSCR_YERPS 144 74 -
PAFVTSELKTAFQIGFTVFIP FLIP_ERWCA 185 68 -
PAYVTSELKTAFQIGFTIFIP FLIP_SALTY 172 68 -
PAFVLSELQAGFEIGFLIYIP HRPW_PSESY 136 74 -
PAFVLSELQAGFEIGFLIYIP O85095 136 74 -
PAYVTSELKTAFQIGFTIFIP FLIP_ECOLI 172 68 -
PAFVLSELQAGFKIGFLIYIP HRCR_ERWAM 145 74 -
PAFMTSELKTAFQIGFLLFLP O85133 227 68 -
PAFMISELKRAFEIGFLLFIP FLIP_CAUCR 189 68 -
PAFVLSELQAGFKIGFLIYIP HRCR_ERWHE 145 74 -
PAYALSEIKDAFKIGFYLYLP SPAP_SHIFL 140 73 -
PAFTMGQLEAAFKIGFLLYLP O52127 146 72 -
PAFTMGQLEAAFKIGFLLYLP O85642 146 72 -
PSFLISELKRAFEIGFLLYLP P72275 172 74 -
PSFLISELKRAFEIGFLLYLP Y4YL_RHISN 145 74 -
PAFTVSQLTQAFRIGLLIYLP YSCR_SALTY 143 73 -
PAFAISELKTAFQIGFMIFIP FLIP_BACSU 150 68 -
PAFTLSELTEAFRIGFLLYLV PRO2_XANCG 144 74 -
PAFILHELTVAFQIGIFLYLP FLIP_TREPA 199 70 -
PAFMVSELKTAFEIVFLLYIP O67750 167 70 -
PAFIMGQIKNAFEIGVLIYLP O84566 234 83 -
AAFILHELKVAFKMGILIFLP FLIP_BORBU 182 71 -
PAFTLTELTSAFRIGFLLYLA HRPT_BURSO 145 76 -
PAFMLSEIRRGFEIGFLIILP FLIP_AGRTU 173 70 -
PAFMISEIRRGFEIGFLIMLP FLIP_RHIME 173 70 -

Motif 5 width=22
Element Seqn Id St Int Rpt
FVVVDLVVSSVLLALGMMMMSP Q57420 169 0 -
FVVVDLVVSSVLLALGMMMMSP Q57175 169 0 -
FVVVDLVVSSVLLALGMMMMSP Q57515 169 0 -
FVVVDLVVSSVLLALGMMMMSP SPAP_SALTY 169 0 -
FVVVDLVVSSVLLALGMMMMSP SPAP_SALTI 169 0 -
FIVIDLVISNILLAMGMMMVSP YSCR_YERPS 165 0 -
FLIIDLVVASVLMALGMMMVPP FLIP_ERWCA 206 0 -
FLIIDLVIASVLMALGMMMVPP FLIP_SALTY 193 0 -
FIVIDLIVSNLLLALGMQMVSP HRPW_PSESY 157 0 -
FIVIDLIVSNLLLALGMQMVSP O85095 157 0 -
FLIIDLVIASVLMALGMMMVPP FLIP_ECOLI 193 0 -
FIVIDLIVSHVLLALGMQMVAP HRCR_ERWAM 166 0 -
FLVIDMVIASILMALGMMMLSP O85133 248 0 -
FLVIDLVVASVLMSMGMMMLPP FLIP_CAUCR 210 0 -
FIVIDLIVSNVLLTLGMQMVTP HRCR_ERWHE 166 0 -
FVVVDLVISSILLALGMMMMSP SPAP_SHIFL 161 0 -
FIAIDLIISNILLALGMMMVSP O52127 167 0 -
FIAIDLIISNILLALGMMMVSP O85642 167 0 -
FIVIDLIVTTILMAMGMSMVSP P72275 193 0 -
FIVIDLIVTTILMAMGMSMVSP Y4YL_RHISN 166 0 -
FLAIDLLISNILLAMGMMMVSP YSCR_SALTY 164 0 -
FLIIDMVVASVLMSMGMMMLPP FLIP_BACSU 171 0 -
FIVIDLVVANALMAMGLSQVTP PRO2_XANCG 165 0 -
FIIVDMVVASILMSMGMIMLPP FLIP_TREPA 220 0 -
FLIVDLVVASILISMGIIMIPP O67750 188 0 -
FFVIDLVTANVLVAMQMMMLSP O84566 255 0 -
FIVLDIIVASVLMAMGMIMLPP FLIP_BORBU 203 0 -
FIVIDLVIANLLMALGLSQVTP HRPT_BURSO 166 0 -
FLVIDLIVATITMAMGMMMLPP FLIP_AGRTU 194 0 -
FLVIDLIVATITMAMGMMMLPP FLIP_RHIME 194 0 -

Motif 6 width=26
Element Seqn Id St Int Rpt
ISTPIKLVLFVALDGWTLLSKGLILQ Q57420 193 2 -
ISTPIKLVLFVALDGWTLLSKGLILQ Q57175 193 2 -
ISTPIKLVLFVALDGWTLLSKGLILQ Q57515 193 2 -
ISTPIKLVLFVALDGWTLLSKGLILQ SPAP_SALTY 193 2 -
ISTPIKLVLFVALDGWTLLSKGLILQ SPAP_SALTI 193 2 -
ISLPFKLLLFVLLDGWTRLTHGLVIS YSCR_YERPS 189 2 -
ISLPFKLMLFVLVDGWQLLLGSLAQS FLIP_ERWCA 230 2 -
IALPFKLMLFVLVDGWQLLMGSLAQS FLIP_SALTY 217 2 -
LSLPLKLLLFVLVSGWSRLLDSLFYS HRPW_PSESY 181 2 -
LSLPLKLLLFVLVSGWSRLLDSLFYS O85095 181 2 -
IALPFKLMLFVLVDGWQLLVGSLAQS FLIP_ECOLI 217 2 -
LSLPLKMLLFVLINGWTRLLDGLFYS HRCR_ERWAM 190 2 -
VSLPFKLLLFVLVDGWALTVGSLAAS O85133 272 2 -
ISLPFKLIFFVLVDGWRLVAGSLVES FLIP_CAUCR 234 2 -
LSLPLKMLLLILINGWTRLLDGLFYS HRCR_ERWHE 190 2 -
ISVPIKLVLFVALDGWGILSKALIEQ SPAP_SHIFL 185 2 -
ISIPFKILLFILVGGWQKLFEFLLVV O52127 191 2 -
ISIPFKILLFILVGGWQKLFEFLLVV O85642 191 2 -
IAVPFKLFLFVAIDGWSRLMHGLVLS P72275 217 2 -
IAVPFKLFLFVAIDGWSRLMHGLVLS Y4YL_RHISN 190 2 -
ISLPFKLLIFLLAGGWDLTLAQLVQS YSCR_SALTY 188 2 -
ISLPFKILLFVLVDGWYLIVKSLLQS FLIP_BACSU 195 2 -
VAIPFKLLLFVAMDGWSMLIHGLVLS PRO2_XANCG 189 2 -
ISLPFKLVLFVLVDGWNLLIDRLFHS FLIP_TREPA 244 2 -
ISLPFKIMLFVLANGWELVVLSLVRS O67750 212 2 -
ISLPLKLLLVVMVDGWTLLLEGLMIS O84566 279 2 -
ISLPFKLILFVMVDGWTLITSGLIKS FLIP_BORBU 227 2 -
VAIPFKLLLFVVMDGWSVLIHGLVNT HRPT_BURSO 190 2 -
ISLPFKILFFVLIDGWNLLVGSLVRS FLIP_AGRTU 218 2 -
ISLPFKILFFVLIDGWNLLVGSLVRS FLIP_RHIME 218 2 -