Identifier | TRNASYNTHMET  [View Relations]  [View Alignment]  
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Accession | PR01041 |
No. of Motifs | 6 |
Creation Date | 11-DEC-1998  (UPDATE 28-JUN-1999) |
Title | Methionyl-tRNA synthetase signature |
Database References | PRINTS; PR90000 TRNASYNTH; PR90001 TRNASYNTHCLI PROSITE; PS00178 AA_TRNA_LIGASE_I BLOCKS; BL00178 INTERPRO; IPR002304 PDB; 1MEA; 1MED SCOP; 1MEA; 1MED |
Literature References | 1. LODISH, H., BALTIMORE, D., BERK, A., ZIPURSKY, S.L., MATSUDAIRA, P. AND
DARNELL, J.
Nucleic Acids, the Genetic Code, and Protein Synthesis.
IN MOLECULAR CELL BIOLOGY, SCIENTIFIC AMERICAN BOOKS (NEW YORK), 1995,
PP.126-128.
2. DELARUE, M.
Aminoacyl-tRNA synthetases.
CURR.OPIN.STRUCT.BIOL. 5 48-55 (1995).
3. PERONA, J.J., ROULD, M. AND STEITZ, T.A.
Structural Basis for Transfer RNA Aminoacylation by Escherichia coli
Glutaminyl-tRNA Synthetase.
BIOCHEMISTRY 32 8758-8771 (1993).
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Documentation | Appropriate attachment of an amino acid to its cognate tRNA is the key to
faithful translation of the genetic code. The family of enzymes responsible
for this is the aminoacyl-tRNA synthetases (AATRSs) (EC 6.1.1.-).
AATRSs catalyse a two-step reaction:
(1) Enzyme + amino acid + ATP ---> Enzyme(aminoacyl-AMP) + PPi
(2) tRNA + Enzyme(aminoacyl-AMP) ---> aminoacyl-tRNA + AMP + Enzyme
In the first step, they form an aminoacyl-adenylate, in which the carboxyl
of the amino acid is linked to the alpha-phosphate of ATP, by displacing
the pyrophosphate. When the correct tRNA is bound, the aminoacyl group is
transferred to the 2'- or 3'-terminal OH of the tRNA at the expense of AMP
[1].
Based on structural and sequence comparisons, this group of at least 20
proteins (in prokaryotes there are approximately 20, but in eukaryotes
there are usually 2 forms for each amino acid; namely, the cytosolic and
mitochondrial forms) can be divided into two classes.
Class I AATRSs contain a characteristic Rossman fold and are mostly
monomeric. At the primary structure level, two highly-conserved motifs
are observed, `HIGH' and `KMSKS' [2,3]; these are associated with the ATP-
binding site.
Class II AATRSs share an anti-parallel beta-sheet formation, flanked by
alpha-helices [3], and are mostly dimeric or multimeric.
Further distinction between the two classes is evident when the reaction
mechanisms are investigated. In reactions catalysed by the class I AATRSs,
the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in
class II reactions, the 3'-hydroxyl site is preferred.
Methionly-tRNA synthetase (EC 6.1.1.10) is specific to methionine and
belongs to class I.
TRNASYNTHMET is a 6-element fingerprint that provides a signature for the
methionyl-tRNA synthetases. The fingerprint was derived from an initial
alignment of 11 sequences: the motifs were drawn from the N-terminal and
central portions of the alignment - motif 1 spans part of the region encoded
by the PROSITE pattern AA_TRNA_LIGASE_I (PS00178), which contains the `HIGH'
consensus sequence; a zinc binding site lies between motifs 3 and 4. Three
iterations on OWL31.1 were required to reach convergence, at which point a
true set comprising 27 sequences was identified. Two partial matches were
also found, SYM_MYCPU and AB006140, both of which are fragments that lack
the portion of sequence bearing motif 6.
An update on SPTR37_9f identified a true set of 27 sequences, and 11
partial matches.
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Summary Information | 27 codes involving 6 elements 0 codes involving 5 elements 0 codes involving 4 elements 0 codes involving 3 elements 11 codes involving 2 elements
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Composite Feature Index | 6 | 27 | 27 | 27 | 27 | 27 | 27 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 11 | 9 | 0 | 0 | 0 | 2 | | 1 | 2 | 3 | 4 | 5 | 6 |
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True Positives | O13634 O14000 O23761 O33925 O58721 O67298 O74634 O84035 SYMC_YEAST SYMM_YEAST SYM_ARCFU SYM_BACST SYM_BACSU SYM_BORBU SYM_CAEEL SYM_ECOLI SYM_HAEIN SYM_HELPY SYM_HUMAN SYM_METJA SYM_METTH SYM_MYCGE SYM_MYCPN SYM_MYCTU SYM_SYNY3 SYM_THETH SYM_TREPA |
True Positive Partials | |
Sequence Titles | O13634 METHIONYL-TRNA SYNTHETASE - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST). O14000 PUTATIVE METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST). O23761 METRS (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METHIONYL-TRNA SYNTHETASE) - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS). O33925 METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - THERMOTOGA MARITIMA. O58721 723AA LONG HYPOTHETICAL METHIONYL-TRNA SYNTHETASE - PYROCOCCUS HORIKOSHII. O67298 METHIONYL-TRNA SYNTHETASE ALPHA SUBUNIT - AQUIFEX AEOLICUS. O74634 METHIONYL-TRNA SYNTHETASE, MITOCHONDRIAL (EC 6.1.1.10) (METHIONINE-- TRNA LIGASE) (METRS) - CANDIDA ALBICANS (YEAST). O84035 METHIONYL-TRNA SYNTHETASE - CHLAMYDIA TRACHOMATIS. SYMC_YEAST METHIONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST). SYMM_YEAST METHIONYL-TRNA SYNTHETASE, MITOCHONDRIAL (EC 6.1.1.10) (METHIONINE-- TRNA LIGASE) (METRS) - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST). SYM_ARCFU METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - ARCHAEOGLOBUS FULGIDUS. SYM_BACST METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - BACILLUS STEAROTHERMOPHILUS. SYM_BACSU METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - BACILLUS SUBTILIS. SYM_BORBU METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE). SYM_CAEEL PROBABLE METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - CAENORHABDITIS ELEGANS. SYM_ECOLI METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - ESCHERICHIA COLI. SYM_HAEIN METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - HAEMOPHILUS INFLUENZAE. SYM_HELPY METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI). SYM_HUMAN METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - HOMO SAPIENS (HUMAN). SYM_METJA METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - METHANOCOCCUS JANNASCHII. SYM_METTH METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - METHANOBACTERIUM THERMOAUTOTROPHICUM. SYM_MYCGE METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - MYCOPLASMA GENITALIUM. SYM_MYCPN METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - MYCOPLASMA PNEUMONIAE. SYM_MYCTU METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - MYCOBACTERIUM TUBERCULOSIS. SYM_SYNY3 METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - SYNECHOCYSTIS SP. (STRAIN PCC 6803). SYM_THETH METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - THERMUS AQUATICUS (SUBSP. THERMOPHILUS). SYM_TREPA METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE--TRNA LIGASE) (METRS) - TREPONEMA PALLIDUM. O75005 VALYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST). Q12019 HYPOTHETICAL 559.3 KD PROTEIN - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST). SYIM_YEAST ISOLEUCYL-TRNA SYNTHETASE, MITOCHONDRIAL (EC 6.1.1.5) (ISOLEUCINE-- TRNA LIGASE) (ILERS) - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST). SYI_ECOLI ISOLEUCYL-TRNA SYNTHETASE (EC 6.1.1.5) (ISOLEUCINE--TRNA LIGASE) (ILERS) - ESCHERICHIA COLI. SYI_HELPY ISOLEUCYL-TRNA SYNTHETASE (EC 6.1.1.5) (ISOLEUCINE--TRNA LIGASE) (ILERS) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI). SYI_SYNY3 ISOLEUCYL-TRNA SYNTHETASE (EC 6.1.1.5) (ISOLEUCINE--TRNA LIGASE) (ILERS) - SYNECHOCYSTIS SP. (STRAIN PCC 6803). SYLM_SACDO LEUCYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR (EC 6.1.1.4) (LEUCINE--TRNA LIGASE) (LEURS) - SACCHAROMYCES DOUGLASII (YEAST). SYV_ARCFU VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE--TRNA LIGASE) (VALRS) - ARCHAEOGLOBUS FULGIDUS. SYV_METJA VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE--TRNA LIGASE) (VALRS) - METHANOCOCCUS JANNASCHII. SYV_METTH VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE--TRNA LIGASE) (VALRS) - METHANOBACTERIUM THERMOAUTOTROPHICUM. YLJ6_CAEEL HYPOTHETICAL 272.0 KD PROTEIN C50C3.6 IN CHROMOSOME III - CAENORHABDITIS ELEGANS.
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Scan History | OWL31_1 3 50 NSINGLE SPTR37_9f 2 120 NSINGLE
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Initial Motifs | Motif 1 width=14 Element Seqn Id St Int Rpt VTTPLYYVNDVPHL SYM_SYNY3 11 11 - VTTPIYYVNAEPHL SYM_THETH 7 7 - LTTPIYYPSDKLHI SYM_BACST 8 8 - ITTPIYYVNDIPHI SYM_HELPY 6 6 - ITTPIYYPSGKLHI SYM_BACSU 10 10 - ITSALPYVNNVPHL SYM_HUMAN 268 268 - ITTPIYYASGKPHI SYM_MYCGE 6 6 - VTTPIFYPNAKPHL SYMM_YEAST 17 17 - ITTALAYTNGPLHL SYM_METJA 5 5 - VTCALPYANGAIHL SYM_HAEIN 10 10 - VTCALPYANGSIHL SYM_ECOLI 9 9 - Motif 2 width=15 Element Seqn Id St Int Rpt QGYDVLMITGTDEHG SYM_SYNY3 43 18 - DGYRTFFLTGTDEHG SYM_THETH 39 18 - RGYDVMYLTGTDEHG SYM_BACST 40 18 - QGEEVFFLTGTDEHG SYM_HELPY 38 18 - KGFDVRYLTGTDEHG SYM_BACSU 42 18 - RQWNTLYLCGTDEYG SYM_HUMAN 301 19 - NGYEAFLLVGSDEHG SYM_MYCGE 38 18 - KGNLSFFTTGTDEHG SYMM_YEAST 49 18 - RGEDVIHVGGTDNHG SYM_METJA 38 19 - RGNKIHFVCADDAHG SYM_HAEIN 42 18 - RGHEVNFICADDAHG SYM_ECOLI 41 18 - Motif 3 width=12 Element Seqn Id St Int Rpt ILYDRFSRTTDP SYM_SYNY3 91 33 - IAYDDFIRTTEE SYM_THETH 87 33 - ISYDDFIRTTQE SYM_BACST 88 33 - LDYDGFIRTTDS SYM_HELPY 86 33 - ISNDDFIRTTEK SYM_BACSU 90 33 - ISFDIFGRTTTP SYM_HUMAN 349 33 - ISFDHFIRTTDE SYM_MYCGE 86 33 - INYTRFIRTTDP SYMM_YEAST 98 34 - VEFDAFGKTHSQ SYM_METJA 86 33 - ISFDNYHSTHSE SYM_HAEIN 90 33 - ISYDNYHSTHSE SYM_ECOLI 89 33 - Motif 4 width=12 Element Seqn Id St Int Rpt IYVWFDALLGYV SYM_SYNY3 228 125 - TYVWFDALLNYV SYM_THETH 224 125 - IYVWIDALANYI SYM_BACST 224 124 - VYVWLDALLNYA SYM_HELPY 228 130 - VYVWIDALFNYL SYM_BACSU 237 135 - FYVWFDATIGYL SYM_HUMAN 515 154 - IYVWFDALFSYI SYM_MYCGE 221 123 - VYVWFDALCNYL SYMM_YEAST 244 134 - MYVWLEAPIGYI SYM_METJA 244 146 - FYVWLDAPIGYM SYM_HAEIN 251 149 - FYVWLDAPIGYM SYM_ECOLI 250 149 - Motif 5 width=16 Element Seqn Id St Int Rpt HLIGKDILRFHAVYWP SYM_SYNY3 264 24 - HLIGKDILKPHAVFWP SYM_THETH 255 19 - HLVGKEIVRFHTIYWP SYM_BACST 257 21 - HIVGKDILRFHAIYWP SYM_HELPY 260 20 - HLVGKEIVRFHTIYWP SYM_BACSU 270 21 - QFMAKDNVPFHSLVFP SYM_HUMAN 550 23 - HLISREITRFHCIYWP SYM_MYCGE 259 26 - HVIGKDIAKFHTVYWP SYMM_YEAST 300 44 - HFIGKDITVHHAVFWP SYM_METJA 278 22 - HFIGKDIVYFHSLFWP SYM_HAEIN 290 27 - HFIGKDIVYFHSLFWP SYM_ECOLI 291 29 - Motif 6 width=12 Element Seqn Id St Int Rpt DLANDLGNLLNR SYM_SYNY3 356 76 - DLADDLGNLVQR SYM_THETH 348 77 - DLANDLGNLLHR SYM_BACST 349 76 - NLNNDLGNLLNR SYM_HELPY 352 76 - DLANDLGNLLNR SYM_BACSU 362 76 - ELLNNLGNFINR SYM_HUMAN 645 79 - DLANSFGNHVSR SYM_MYCGE 352 77 - LLVSKWGNLINR SYMM_YEAST 391 75 - ELINIIGNFTHR SYM_METJA 371 77 - DIVNKLVNLASR SYM_HAEIN 383 77 - DIVNKVVNLASR SYM_ECOLI 384 77 -
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Final Motifs | Motif 1 width=14 Element Seqn Id St Int Rpt VTTPLYYVNDVPHL SYM_SYNY3 11 11 - LTTPLYYVNAPPHM O23761 73 73 - VTTPIYYVNDVPHL O67298 9 9 - ITTPIYYVNSEPHI O33925 5 5 - VTTAIAYPNAAPHV SYM_MYCTU 6 6 - VTTPIYYVNAEPHL SYM_THETH 7 7 - LTTPIYYPSDKLHI SYM_BACST 8 8 - ITTPIYYVNDIPHI SYM_HELPY 6 6 - ITTPIYYPSGKLHI SYM_BACSU 10 10 - VTSALPYANGPIHA O58721 6 6 - ITTPIYYASGKPHI SYM_MYCPN 6 6 - ITSALPYVNNVPHL O13634 21 21 - ITCALPYANGPTHL SYM_METTH 6 6 - ITSALPYVNNVPHL SYMC_YEAST 199 199 - ITSALPYVNNVPHL SYM_HUMAN 268 268 - ITAALPYVNNVPHL SYM_TREPA 6 6 - ITAALPYVNNVPHL SYM_CAEEL 39 39 - ITTPIYYASGKPHI SYM_MYCGE 6 6 - VTAALPYVNNIPHL SYM_BORBU 7 7 - VTTPIFYPNAKPHL SYMM_YEAST 17 17 - LTTPIFYVNAAPHL O14000 23 23 - ITSALPYANGPLHF O84035 8 8 - ITTPIFYVNAAPHI O74634 22 22 - ITTALAYTNGPLHL SYM_METJA 5 5 - VTCGLPYANGKAHV SYM_ARCFU 4 4 - VTCALPYANGAIHL SYM_HAEIN 10 10 - VTCALPYANGSIHL SYM_ECOLI 9 9 - Motif 2 width=15 Element Seqn Id St Int Rpt QGYDVLMITGTDEHG SYM_SYNY3 43 18 - LGKKVIFITGTDEHG O23761 105 18 - RDYDVFFLTGTDEHG O67298 41 18 - MGYDVFFLTGTDEHG O33925 37 18 - DRYDVRFLTGTDEHG SYM_MYCTU 38 18 - DGYRTFFLTGTDEHG SYM_THETH 39 18 - RGYDVMYLTGTDEHG SYM_BACST 40 18 - QGEEVFFLTGTDEHG SYM_HELPY 38 18 - KGFDVRYLTGTDEHG SYM_BACSU 42 18 - KGEDVVFICGTDEHG O58721 39 19 - NGYEAYFLTGTDEHG SYM_MYCPN 38 18 - RNHNTLYICGTDEYG O13634 54 19 - RGDDVLFVCATDEHG SYM_METTH 39 19 - RNYNALFICGTDEYG SYMC_YEAST 232 19 - RQWNTLYLCGTDEYG SYM_HUMAN 301 19 - RGYHTCFVCGTDEYG SYM_TREPA 38 18 - RGHQTFYVGGTDEYG SYM_CAEEL 72 19 - NGYEAFLLVGSDEHG SYM_MYCGE 38 18 - SGIETLYVCGTDEYG SYM_BORBU 39 18 - KGNLSFFTTGTDEHG SYMM_YEAST 49 18 - PDVSVISSTGTDEHG O14000 56 19 - QGKEVLYICGSDEYG O84035 41 19 - PSKESFMLTGTDEHG O74634 55 19 - RGEDVIHVGGTDNHG SYM_METJA 38 19 - SGEEVVFVCGSDCHG SYM_ARCFU 36 18 - RGNKIHFVCADDAHG SYM_HAEIN 42 18 - RGHEVNFICADDAHG SYM_ECOLI 41 18 - Motif 3 width=12 Element Seqn Id St Int Rpt ILYDRFSRTTDP SYM_SYNY3 91 33 - IAYDKFIRTTDP O23761 153 33 - IEYTKFIRTTDP O67298 89 33 - ITNDYFIRTTDE O33925 85 33 - ISFDRFIRTTDA SYM_MYCTU 86 33 - IAYDDFIRTTEE SYM_THETH 87 33 - ISYDDFIRTTQE SYM_BACST 88 33 - LDYDGFIRTTDS SYM_HELPY 86 33 - ISNDDFIRTTEK SYM_BACSU 90 33 - ISFDFFGRTELP O58721 87 33 - INFDHFIRTTDL SYM_MYCPN 86 33 - IDFDHFGRTTTP O13634 102 33 - ISFDSFTRTTDE SYM_METTH 87 33 - IGFDYFGRTTTD SYMC_YEAST 280 33 - ISFDIFGRTTTP SYM_HUMAN 349 33 - LSFDYFGRTTSD SYM_TREPA 86 33 - IDFSHFGRTTTD SYM_CAEEL 120 33 - ISFDHFIRTTDE SYM_MYCGE 86 33 - IEFDIFGRTTNK SYM_BORBU 87 33 - INYTRFIRTTDP SYMM_YEAST 98 34 - TKFTHFIRTTNP O14000 104 33 - ISVDFFSRTTNT O84035 89 33 - VNYDRFIRTTDN O74634 103 33 - VEFDAFGKTHSQ SYM_METJA 86 33 - IKFDFYGRTDSD SYM_ARCFU 84 33 - ISFDNYHSTHSE SYM_HAEIN 90 33 - ISYDNYHSTHSE SYM_ECOLI 89 33 - Motif 4 width=12 Element Seqn Id St Int Rpt IYVWFDALLGYV SYM_SYNY3 228 125 - IYVWFDALLGYI O23761 289 124 - IYVWFDALFNYI O67298 227 126 - IYVWVDALINYI O33925 224 127 - MYVWVDALTNYL SYM_MYCTU 225 127 - TYVWFDALLNYV SYM_THETH 224 125 - IYVWIDALANYI SYM_BACST 224 124 - VYVWLDALLNYA SYM_HELPY 228 130 - VYVWIDALFNYL SYM_BACSU 237 135 - LYVWFEAPIGYI O58721 251 152 - IYVWFDALFNYI SYM_MYCPN 221 123 - LYVWFDATIGYI O13634 268 154 - IYVWGEAFLGYI SYM_METTH 249 150 - LYVWFDATIGYV SYMC_YEAST 446 154 - FYVWFDATIGYL SYM_HUMAN 515 154 - FYVWFDAPVGYI SYM_TREPA 250 152 - FYVWFDAPIGYL SYM_CAEEL 288 156 - IYVWFDALFSYI SYM_MYCGE 221 123 - FYVWFDAPIGYI SYM_BORBU 252 153 - VYVWFDALCNYL SYMM_YEAST 244 134 - IYVWLDALINYI O14000 251 135 - FYVWFDAPIGYI O84035 248 147 - IYVWFDALLNYL O74634 249 134 - MYVWLEAPIGYI SYM_METJA 244 146 - VYVWVDAPIGYI SYM_ARCFU 243 147 - FYVWLDAPIGYM SYM_HAEIN 251 149 - FYVWLDAPIGYM SYM_ECOLI 250 149 - Motif 5 width=16 Element Seqn Id St Int Rpt HLIGKDILRFHAVYWP SYM_SYNY3 264 24 - HLIGKDILRFHAVYWP O23761 325 24 - HLVGKDILRFHTVYWP O67298 254 15 - HLIGKEINRFHSIIWP O33925 256 20 - HMIGKDIIRFHAVYWP SYM_MYCTU 258 21 - HLIGKDILKPHAVFWP SYM_THETH 255 19 - HLVGKEIVRFHTIYWP SYM_BACST 257 21 - HIVGKDILRFHAIYWP SYM_HELPY 260 20 - HLVGKEIVRFHTIYWP SYM_BACSU 270 21 - HFIGKDNIPFHAIFWP O58721 293 30 - HLISREITRFHCIYWP SYM_MYCPN 259 26 - QFMGKDNVPFHTVIFP O13634 303 23 - HFIGKDIIYHHAIFWP SYM_METTH 284 23 - QFMGKDNVPFHTVVFP SYMC_YEAST 481 23 - QFMAKDNVPFHSLVFP SYM_HUMAN 550 23 - QFVGKDNIPFHTLFFP SYM_TREPA 301 39 - NFVGKDNVAFHAVMFP SYM_CAEEL 324 24 - HLISREITRFHCIYWP SYM_MYCGE 259 26 - QFIGKDNILFHTIIFP SYM_BORBU 287 23 - HVIGKDIAKFHTVYWP SYMM_YEAST 300 44 - HVIGKDIIRFHCIYWP O14000 285 22 - QFIGKDNTSFHAAIFP O84035 288 28 - HVIGKDIIRFHCIYWP O74634 288 27 - HFIGKDITVHHAVFWP SYM_METJA 278 22 - HFIGLDIVYHHCIFWP SYM_ARCFU 281 26 - HFIGKDIVYFHSLFWP SYM_HAEIN 290 27 - HFIGKDIVYFHSLFWP SYM_ECOLI 291 29 - Motif 6 width=12 Element Seqn Id St Int Rpt DLANDLGNLLNR SYM_SYNY3 356 76 - HLANTIGNLLNR O23761 417 76 - ELANEIGNLYSR O67298 346 76 - DLANDYGNLLHR O33925 348 76 - DLANELGNLAQR SYM_MYCTU 350 76 - DLADDLGNLVQR SYM_THETH 348 77 - DLANDLGNLLHR SYM_BACST 349 76 - NLNNDLGNLLNR SYM_HELPY 352 76 - DLANDLGNLLNR SYM_BACSU 362 76 - ELVNNLGNFVHR O58721 395 86 - DLANSFGNHASR SYM_MYCPN 352 77 - ELLANLGNFVNR O13634 398 79 - ELADVLGNFLHR SYM_METTH 376 76 - ELLANLGNFVNR SYMC_YEAST 576 79 - ELLNNLGNFINR SYM_HUMAN 645 79 - ELIGNLCNLVNR SYM_TREPA 396 79 - ELLNNLGNFINR SYM_CAEEL 419 79 - DLANSFGNHVSR SYM_MYCGE 352 77 - ELIDNFSNLVNR SYM_BORBU 382 79 - LLVSKWGNLINR SYMM_YEAST 391 75 - DLRRSLGVLLSR O14000 377 76 - ELVGKYGNFVNR O84035 382 78 - AVLGKYCNLISR O74634 379 75 - ELINIIGNFTHR SYM_METJA 371 77 - EVIATLGNFLYR SYM_ARCFU 375 78 - DIVNKLVNLASR SYM_HAEIN 383 77 - DIVNKVVNLASR SYM_ECOLI 384 77 -
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