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PR01410

Identifier
CCBIOGENESIS  [View Relations]  [View Alignment]  
Accession
PR01410
No. of Motifs
8
Creation Date
30-APR-2000
Title
Cytochrome c-type biogenesis protein signature
Database References
PRINTS; PR01412 CCBSBIOGNSIS; PR01411 CCMFBIOGNSIS; PR01413 NRFEBIOGNSIS

PFAM; PF01578 CytC_asm
INTERPRO; IPR002541
Literature References
1. DELGADO, M.J., YEOMAN, K.H., WU, G., VARGAS, C., DAVIES, A., POOLE, R.K.,
JOHNSTON, A.W.B. AND DOWNIE, J.A.
Characterization of the cycHJKL genes involved in cytochrome c
biogenesis and symbiotic nitrogen fixation in Rhizobium leguminosarum.
J.BACTERIOL. 177 4927-4934 (1995). 
 
2.THOENY-MEYER, L., FISCHER, F., KUNZLER, P., RITZ, D. AND HENNECKE, H.
Escherichia coli genes required for cytochrome c maturation.
J.BACTERIOL. 177 4321-4326 (1995).
 
3. PAGE D., PEARCE D.A., NORRIS H.A. AND FERGUSON S.J.
The Paracoccus denitrificans ccmA, B and C genes: cloning and
sequencing, and analysis of the potential of their products to form a haem
or apo-c-type cytochrome transporter.
MICROBIOLOGY 143 563-576 (1997).
 
4. HUSSAIN, H., GROVE, J., GRIFFITHS, L., BUSBY, S. AND COLE, J. 
A seven-gene operon essential for formate-dependent nitrite reduction to
ammonia by enteric bacteria.
MOL.MICROBIOL. 12 153-163 (1994). 
 
5. SCHUSTER, W., COMBETTES, B., FLIEGER, K. AND BRENNICKE, A.
A plant mitochondrial gene encodes a protein involved in cytochrome c 
biogenesis.
MOL.GEN.GENET. 239 49-57 (1993).

Documentation
Within mitochondria and bacteria, a family of related proteins is involved
in the assembly of periplasmic c-type cytochromes: these include CycK [1],
CcmF [2,3], NrfE [4] and CcbS [5]. These proteins may play a role in 
guidance of apocytochromes and haem groups for their covalent linkage 
by the cytochrome-c-haem lyase. Members of the family are probably integral
membrane proteins, with up to 16 predicted transmembrane (TM) helices. 
 
CCBIOGENESIS is an 8-element fingerprint that provides a signature for 
cytochrome c-type biogenesis proteins. The fingerprint was derived from an 
initial alignment of 12 sequences: the motifs were drawn from conserved
regions spanning virtually the full alignment length - motif 1 includes
putative TM domain 3; motif 2 includes part of TM domain 4; motif 3 encodes
part of TM domain 5; motif 4 spans TM domain 6; motif 5 encodes part of TM
domain 7; motifs 6 and 8 span TM domains 8 and 9, and motif 7 spans the 
loop between them. Two iterations on SPTR37_10f were required to reach 
convergence, at which point a true set comprising 18 sequences was 
identified. Three partial matches were also found, all of which are 
related plant proteins that fail to match one or more motifs.
Summary Information
  18 codes involving  8 elements
1 codes involving 7 elements
0 codes involving 6 elements
2 codes involving 5 elements
0 codes involving 4 elements
2 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
81818181818181818
711111110
600000000
520222020
400000000
322200000
200000000
12345678
True Positives
CCBS_DAUCA    CCBS_MARPO    CCBS_OENBE    CCMF_BRAJA    
CCMF_ECOLI CCMF_HAEIN CCMF_PSEFL CCMF_RHIME
CCMF_RHOCA NRFE_ECOLI NRFE_HAEIN O21277
O30977 Q35984 Q51753 Q52732
Q52820 Q9Z646
True Positive Partials
Codes involving 7 elements
Q9ZCM1
Codes involving 5 elements
O28091 Q9ZZP7
Codes involving 3 elements
P92585 Q31706
Sequence Titles
CCBS_DAUCA  PROBABLE CYTOCHROME C BIOSYNTHESIS PROTEIN - DAUCUS CAROTA (CARROT). 
CCBS_MARPO PROBABLE CYTOCHROME C BIOSYNTHESIS PROTEIN - MARCHANTIA POLYMORPHA (LIVERWORT).
CCBS_OENBE PROBABLE CYTOCHROME C BIOSYNTHESIS PROTEIN - OENOTHERA BERTIANA (BERTERO'S EVENING PRIMROSE).
CCMF_BRAJA CYTOCHROME C-TYPE BIOGENESIS PROTEIN CYCK - BRADYRHIZOBIUM JAPONICUM.
CCMF_ECOLI CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMF - ESCHERICHIA COLI.
CCMF_HAEIN CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMF - HAEMOPHILUS INFLUENZAE.
CCMF_PSEFL CYTOCHROME C-TYPE BIOGENESIS PROTEIN CYCK - PSEUDOMONAS FLUORESCENS.
CCMF_RHIME CYTOCHROME C-TYPE BIOGENESIS PROTEIN CYCK - RHIZOBIUM MELILOTI.
CCMF_RHOCA CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCL1 - RHODOBACTER CAPSULATUS (RHODOPSEUDOMONAS CAPSULATA).
NRFE_ECOLI CYTOCHROME C-TYPE BIOGENESIS PROTEIN NRFE - ESCHERICHIA COLI.
NRFE_HAEIN CYTOCHROME C-TYPE BIOGENESIS PROTEIN NRFE - HAEMOPHILUS INFLUENZAE.
O21277 HAEM LYASE - RECLINOMONAS AMERICANA.
O30977 CCMF - PARACOCCUS DENITRIFICANS.
Q35984 MITOCHONDRIAL RPS1A GENE AND ORF589 - TRITICUM AESTIVUM (WHEAT).
Q51753 INNER MEMBRANE OR PERIPLASMIC PROTEIN - PSEUDOMONAS FLUORESCENS.
Q52732 PROBABLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CYCK - RHIZOBIUM ETLI.
Q52820 DNA FOR CYCH, CYCJ, CYCK AND CYCL GENES - RHIZOBIUM LEGUMINOSARUM.
Q9Z646 CCMF - PANTOEA CITREA.

Q9ZCM1 CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMF (CCMF) - RICKETTSIA PROWAZEKII.

O28091 CYTOCHROME C-TYPE BIOGENESIS PROTEIN (NRFE) - ARCHAEOGLOBUS FULGIDUS.
Q9ZZP7 CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMF - CYANIDIOSCHYZON MEROLAE.

P92585 CCL1 - BRASSICA NAPUS (RAPE).
Q31706 CCL1-LIKE PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
Scan History
SPTR37_10f 2  50   NSINGLE    
Initial Motifs
Motif 1  width=27
Element Seqn Id St Int Rpt
PFFYQISGTWSNHEGSILLWCWIPSFY CCBS_OENBE 65 65 -
PTFFKVAATWGGHEGSMLFWLFSLSLW NRFE_HAEIN 80 80 -
PLFYKISGTWSNHEGSLLLWCWILSFY CCBS_MARPO 93 93 -
PIYYRLSAVWGSHEGSLLLWIWLLAVW CCMF_HAEIN 80 80 -
PMLYKVTGVWGNHEGSMLLWVLILAMF CCMF_RHOCA 80 80 -
PWYYLFSAVWGAHEGSLLLWALILGGW CCMF_PSEFL 85 85 -
PVWYRVAATWGAHEGSLLLWVLLMSGW CCMF_ECOLI 80 80 -
PLLYKITGVWGNHEGSMLLWVSILALF CCMF_BRAJA 80 80 -
PLIYKITGVWGNHEGSMLLWLLILVFF CCMF_RHIME 80 80 -
SWELKLAAVWGGHEGSLLLWVLLLSAW NRFE_ECOLI 63 63 -
PFFYQISGTWSNHEGSISLWCRILSFY CCBS_DAUCA 65 65 -

Motif 2 width=18
Element Seqn Id St Int Rpt
IALFFSIFLLASSNPFVR CCBS_MARPO 172 52 -
IGVAFLVFVLFTSNPFLR CCMF_RHOCA 132 25 -
ISIGFLLFLIMTSNPFSR CCMF_PSEFL 137 25 -
IALFFSPFLSASSDPFVR CCBS_OENBE 230 138 -
IALFFSPFLSASSDPFVR CCBS_DAUCA 232 140 -
MLAALLLFVVLWSDPFVR NRFE_ECOLI 115 25 -
VSVGFLLFILFTSNPFSR CCMF_ECOLI 132 25 -
IASAFYLFILVTSNPFLR CCMF_BRAJA 132 25 -
IATAFAFFVLLTSNPFAR CCMF_RHIME 132 25 -
ICFGFAVFILFYSNPFGR NRFE_HAEIN 132 25 -
ISVGFVLFVLFTSNPFTR CCMF_HAEIN 132 25 -

Motif 3 width=23
Element Seqn Id St Int Rpt
DMNPLLQDPGLAFHPPFLYLGYV CCMF_RHOCA 159 9 -
DLNPMLQHPGLIFHPPLLYLGYG NRFE_ECOLI 142 9 -
ESNPVPQDPISAIHPPCIYAGDV CCBS_DAUCA 260 10 -
ESNPVPQDPISAIHPPCIYAGDV CCBS_OENBE 258 10 -
DLNPMLQDVGLIFHPPLLYVGYV NRFE_HAEIN 159 9 -
ELNPVLQDPILAIHPPCIYAGYV CCBS_MARPO 200 10 -
DLNPVLQDIGLAIHPPLLYLGYV CCMF_RHIME 159 9 -
DLNPVLQDIGLAVHPPMLYLGYV CCMF_BRAJA 159 9 -
DLNPLLQDPGLIFHPPLLYMGYV CCMF_ECOLI 160 10 -
DLNPLLQDIGLIVHPPMLYMGYV CCMF_PSEFL 165 10 -
ELNPMLQDVGLIFHPPLLYMGYV CCMF_HAEIN 160 10 -

Motif 4 width=27
Element Seqn Id St Int Rpt
WTLAAWVFLTLGIVLGSWWAYYELGWG CCMF_HAEIN 211 28 -
WTLAAWTFLTAGIAMGSYWAYYELGWG CCMF_RHIME 210 28 -
WTLVAWIFLTLGIAMGSYWAYYELGWG CCMF_BRAJA 210 28 -
WTLAAWIFLTLGIVLGSAWAYYELGWG CCMF_ECOLI 211 28 -
WTIVAWAFLGIGITLGSWWAYYELGWG CCMF_PSEFL 216 28 -
WTLAAWIFLTIGIALGSWWAYYELGWG CCMF_RHOCA 210 28 -
WILTCWCFLTVGILLGSWWAYHELGWG CCBS_MARPO 320 97 -
WVLVSWLFLTIGIVLGAWWAYYELGWG NRFE_HAEIN 210 28 -
WILTCWCFLNVGILLGSWWAHHELGWG CCBS_OENBE 419 138 -
WILTCRWFLNVGILLGSWWAHHELGRG CCBS_DAUCA 421 138 -
WALPGWSALTAGIILGSWWAYCELGLG NRFE_ECOLI 193 28 -

Motif 5 width=21
Element Seqn Id St Int Rpt
VENSSFMPWLAGTALIHSLSV CCMF_HAEIN 245 7 -
VENASFMPWVLATACIHSVIL CCBS_MARPO 354 7 -
VENASLMPWLLGLALLHSLMA NRFE_HAEIN 244 7 -
VENASFMPRVLATARIHSVIL CCBS_OENBE 453 7 -
VENASLLPWLSATALLHSLSL NRFE_ECOLI 227 7 -
VENASFMPRVLATARIHSVIL CCBS_DAUCA 455 7 -
VENASFMPWLAGTALLHSALV CCMF_RHIME 244 7 -
VENASLMPWLAGTALLHSALV CCMF_BRAJA 244 7 -
VENASFMPWLVGTALMHSLAV CCMF_ECOLI 245 7 -
VENASFMPWLVGTALIHSLAV CCMF_PSEFL 250 7 -
VENASLMPWLLAAALLHSAIV CCMF_RHOCA 244 7 -

Motif 6 width=21
Element Seqn Id St Int Rpt
WTSFLNIVTLPCCVSGTSSIR CCBS_DAUCA 481 5 -
WSLLLAIVTLMLSLLGTLIVR NRFE_ECOLI 257 9 -
CTSLINIVTLLCCVLGTFSIR CCBS_OENBE 479 5 -
WTVLLAIMTFSLSLLGTFLVR CCMF_RHIME 274 9 -
WTILLSILTFSLSLLGTFLVR CCMF_BRAJA 274 9 -
WTLLLAISAFSLCLLGTFLVR CCMF_ECOLI 275 9 -
WTVLLAIAAFSLTLLAAFLVR CCMF_PSEFL 280 9 -
WTILLAIMAFGFSLIGTFLVR CCMF_RHOCA 274 9 -
WTVLLAILAFSLCLLGTFLVR CCMF_HAEIN 275 9 -
WTLFLNMVTFLCCILGTFFVR CCBS_MARPO 380 5 -
WTTLFSLLAFAFSVLGTFIVR NRFE_HAEIN 274 9 -

Motif 7 width=17
Element Seqn Id St Int Rpt
RSGLLASVHSFATDSTR CCBS_MARPO 400 -1 -
RSGVISSVHSFANDPER CCMF_RHOCA 294 -1 -
RSGVLTSVHAFASDPER CCMF_PSEFL 300 -1 -
RSGILVSVHAFALDNVR NRFE_ECOLI 277 -1 -
RSGLLAPVHSFATDDTR CCBS_DAUCA 501 -1 -
RSGLLASVHSFATDDTR CCBS_OENBE 499 -1 -
RSGVLTSVHAFATDPTR CCMF_RHIME 294 -1 -
RSGVITSVHAFATDPTR CCMF_BRAJA 294 -1 -
RSGVLVSVHAFASDPAR CCMF_ECOLI 295 -1 -
RSGALTSVHAFALDNTR NRFE_HAEIN 294 -1 -
RSGILVSVHAFASDPTR CCMF_HAEIN 295 -1 -

Motif 8 width=20
Element Seqn Id St Int Rpt
RGIFLWCFFLLITSISFLFF CCBS_MARPO 416 -1 -
RAVPLFSLFALISLASLALY NRFE_ECOLI 293 -1 -
RGIFLWRFFLLMTGISMILF CCBS_DAUCA 517 -1 -
RGLYILAYLVVVIGGSLALY CCMF_HAEIN 311 -1 -
RGVFILFILAFFTGGALTLY CCMF_RHOCA 310 -1 -
RGVFILIFLLFVVGGSLTLF CCMF_PSEFL 316 -1 -
RGMFILAFMVLVIGGSLLLF CCMF_ECOLI 311 -1 -
RGVFILLILCLFIGGSLSLF CCMF_BRAJA 310 -1 -
RGVFILAILIVFIGGAFSLF CCMF_RHIME 310 -1 -
RGIFLWRFFLLMTGISMILF CCBS_OENBE 515 -1 -
RGYVLLLIFFVLTALAFGLF NRFE_HAEIN 310 -1 -
Final Motifs
Motif 1  width=27
Element Seqn Id St Int Rpt
PFFYQISGTWSNHEGSILLWCWIPSFY CCBS_OENBE 65 65 -
PTFFKVAATWGGHEGSMLFWLFSLSLW NRFE_HAEIN 80 80 -
PLFYKISGTWSNHEGSLLLWCWILSFY CCBS_MARPO 93 93 -
PLLYKVAGVWGNHEGNVLLWVLILAMF O30977 80 80 -
PIYYRLSAVWGSHEGSLLLWIWLLAVW CCMF_HAEIN 80 80 -
PIWYRIAATWGAHEGSLLLWLLMLSGW Q9Z646 80 80 -
PLLYKYSGVWGNHEGSMMLWLLILTLF Q52820 80 80 -
PMLYKVTGVWGNHEGSMLLWVLILAMF CCMF_RHOCA 80 80 -
PWYYLFSAVWGAHEGSLLLWALILGGW CCMF_PSEFL 85 85 -
PVWYRVAATWGAHEGSLLLWVLLMSGW CCMF_ECOLI 80 80 -
PWYYKFSAVWGAHEGSLLLWAFILGGW Q51753 84 84 -
PLLYKITGVWGNHEGSMLLWVSILALF CCMF_BRAJA 80 80 -
PLIYKITGVWGNHEGSMLLWLLILVFF CCMF_RHIME 80 80 -
PLIYKYSGVWGNHEGSMMLWLLILALF Q52732 80 80 -
SWELKLAAVWGGHEGSLLLWVLLLSAW NRFE_ECOLI 63 63 -
PFFYQISGTWSNHEGSISLWCRILSFY CCBS_DAUCA 65 65 -
PLIYKICALWSNHEGSMLLWCWILSIY O21277 80 80 -
PFFYQISGTWSNHEGSILSWCWIPSFY Q35984 79 79 -

Motif 2 width=18
Element Seqn Id St Int Rpt
IATAFAFFVLLTSNPFAR CCMF_RHIME 132 25 -
ICFGFAVFILFYSNPFGR NRFE_HAEIN 132 25 -
IALFFSIFLLASSNPFVR CCBS_MARPO 172 52 -
IGVAFLLFVLFTSNPFIR O30977 132 25 -
ISVGFVLFVLFTSNPFTR CCMF_HAEIN 132 25 -
INLGFLLFITLTSNPFIR Q9Z646 132 25 -
ISVAFTLFILLTSNPFLR Q52820 132 25 -
IGVAFLVFVLFTSNPFLR CCMF_RHOCA 132 25 -
ISIGFLLFLIMTSNPFSR CCMF_PSEFL 137 25 -
VSVGFLLFILFTSNPFSR CCMF_ECOLI 132 25 -
ISIGFLLFLIMTSNPFER Q51753 136 25 -
IASAFYLFILVTSNPFLR CCMF_BRAJA 132 25 -
ISLAFTLFILLTSNPFLR Q52732 132 25 -
IALFFSPFLSASSDPFVR CCBS_OENBE 230 138 -
IALFFSPFLSASSDPFVR Q35984 241 135 -
INLFFLFFILFTSNPFLQ O21277 131 24 -
IALFFSPFLSASSDPFVR CCBS_DAUCA 232 140 -
MLAALLLFVVLWSDPFVR NRFE_ECOLI 115 25 -

Motif 3 width=23
Element Seqn Id St Int Rpt
ESNPVPQDPISAIHPPCIYAGDV CCBS_OENBE 258 10 -
DLNPMLQDVGLIFHPPLLYVGYV NRFE_HAEIN 159 9 -
ELNPVLQDPILAIHPPCIYAGYV CCBS_MARPO 200 10 -
DLNPILQDPGLAFHPPFLYVGYV O30977 159 9 -
ELNPMLQDVGLIFHPPLLYMGYV CCMF_HAEIN 160 10 -
DLNPLLQDMGLIVHPPMLYMGYV Q51753 164 10 -
DLNPLLQDPGLIFHPPLLYMGYV CCMF_ECOLI 160 10 -
DLNPLLQDIGLIVHPPMLYMGYV CCMF_PSEFL 165 10 -
DMNPLLQDPGLAFHPPFLYLGYV CCMF_RHOCA 159 9 -
DLNPVLQDVGLAIHPPLLYLGYC Q52820 159 9 -
DLNPVLQDVGLAIHPPLLYLGYC Q52732 159 9 -
DLNPVLQDIGLAIHPPLLYLGYV CCMF_RHIME 159 9 -
DLNPVLQDIGLAVHPPMLYLGYV CCMF_BRAJA 159 9 -
DLNPMLQDIGLIFHPPLLYMGYV Q9Z646 160 10 -
DLNPMLQHPGLIFHPPLLYLGYG NRFE_ECOLI 142 9 -
ESNPVPQDPISAIHPPCIYAGDV CCBS_DAUCA 260 10 -
QLNPILQDIVLSIHPPLVYLGYL O21277 158 9 -
ESNPVPQDPISAIHPPCIYAGDV Q35984 269 10 -

Motif 4 width=27
Element Seqn Id St Int Rpt
WTTAAWIFLTIGIVLGLGWAYYDLGWG Q9Z646 211 28 -
WTLAAWTCLTLGIAMGSYWAYYELGWG Q52732 210 28 -
WTLAAWTFLTAGIAMGSYWAYYELGWG CCMF_RHIME 210 28 -
WTLVAWIFLTLGIAMGSYWAYYELGWG CCMF_BRAJA 210 28 -
WTIVAWAFLGIGITLGSWWAYYELGWG Q51753 215 28 -
WTLAAWIFLTLGIVLGSAWAYYELGWG CCMF_ECOLI 211 28 -
WTIVAWAFLGIGITLGSWWAYYELGWG CCMF_PSEFL 216 28 -
WTLAAWIFLTIGIALGSWWAYYELGWG CCMF_RHOCA 210 28 -
WTLAAWTFLTLGIAMGSYSYWAYYELG Q52820 210 28 -
WTLAAWVFLTLGIVLGSWWAYYELGWG CCMF_HAEIN 211 28 -
WTLAGWVFLTVGIALGSWWAYYEVGWG O30977 210 28 -
WILTCWCFLTVGILLGSWWAYHELGWG CCBS_MARPO 320 97 -
WVLVSWLFLTIGIVLGAWWAYYELGWG NRFE_HAEIN 210 28 -
WILTCWCFLNVGILLGSWWAHHELGWG CCBS_OENBE 419 138 -
WILTCRLFLTVGISPGSWWAHHELGRG Q35984 429 137 -
YNLISWCFLTFGIFLGSWWAYYELGWG O21277 210 29 -
WILTCRWFLNVGILLGSWWAHHELGRG CCBS_DAUCA 421 138 -
WALPGWSALTAGIILGSWWAYCELGLG NRFE_ECOLI 193 28 -

Motif 5 width=21
Element Seqn Id St Int Rpt
VENASLMPWLAGTALIHSLAV Q9Z646 245 7 -
VENSSFMPWLAGTALIHSLSV CCMF_HAEIN 245 7 -
VENASFMPWLIAAGLLHSAIV O30977 244 7 -
VENASFMPWVLATACIHSVIL CCBS_MARPO 354 7 -
VENASLMPWLLGLALLHSLMA NRFE_HAEIN 244 7 -
VENASFMPRVLATARIHSVIL CCBS_OENBE 453 7 -
VENASLLPWLSATALLHSLSL NRFE_ECOLI 227 7 -
VENASFMPRVLATARIHSVIL CCBS_DAUCA 455 7 -
VENASLMPWILSTALLHSILN O21277 244 7 -
VENASFMPRVLATARIHSVIL Q35984 463 7 -
VENASFMPWLAGTALLHSALV Q52732 244 7 -
VENASFMPWLAGTALLHSALV CCMF_RHIME 244 7 -
VENASLMPWLAGTALLHSALV CCMF_BRAJA 244 7 -
VENASFMPWLVGTALIHSLAV Q51753 249 7 -
VENASFMPWLVGTALMHSLAV CCMF_ECOLI 245 7 -
VENASFMPWLVGTALIHSLAV CCMF_PSEFL 250 7 -
VENASLMPWLLAAALLHSAIV CCMF_RHOCA 244 7 -
VENASFMPWLAGTALLHSALV Q52820 246 9 -

Motif 6 width=21
Element Seqn Id St Int Rpt
WTSLLNILTLPCCVLGTFSIR Q35984 489 5 -
WSLLLAIVTLMLSLLGTLIVR NRFE_ECOLI 257 9 -
WTSFLNIVTLPCCVSGTSSIR CCBS_DAUCA 481 5 -
TTIYLSFFCFYSSLLGTFFVR O21277 274 9 -
CTSLINIVTLLCCVLGTFSIR CCBS_OENBE 479 5 -
WTVLLAILTFSLSLMGTFLVR Q52732 274 9 -
WTVLLAIMTFSLSLLGTFLVR CCMF_RHIME 274 9 -
WTILLSILTFSLSLLGTFLVR CCMF_BRAJA 274 9 -
WTVLLAIAAFSLSLLGTFLVR Q51753 279 9 -
WTLLLAISAFSLCLLGTFLVR CCMF_ECOLI 275 9 -
WTVLLAIAAFSLTLLAAFLVR CCMF_PSEFL 280 9 -
WTILLAIMAFGFSLIGTFLVR CCMF_RHOCA 274 9 -
WTVLLAILTFSLSLMGTFLVR Q52820 276 9 -
WTVLLAITAFSLSLLGTFLVR Q9Z646 275 9 -
WTVLLAILAFSLCLLGTFLVR CCMF_HAEIN 275 9 -
WTILLAIMAFGFSLIGTFIVR O30977 274 9 -
WTLFLNMVTFLCCILGTFFVR CCBS_MARPO 380 5 -
WTTLFSLLAFAFSVLGTFIVR NRFE_HAEIN 274 9 -

Motif 7 width=17
Element Seqn Id St Int Rpt
RSGVITSVHSFASDPKR O30977 294 -1 -
RSGVLVSVHSFASDPSR Q9Z646 295 -1 -
RSGVLTSVHAFASDPSR Q52820 296 -1 -
RSGVISSVHSFANDPER CCMF_RHOCA 294 -1 -
RSGVLTSVHAFASDPER CCMF_PSEFL 300 -1 -
RSGILVSVHAFALDNVR NRFE_ECOLI 277 -1 -
RSGLLAPVHSFATDDTR CCBS_DAUCA 501 -1 -
RSGLIDSVHSFASDSNR O21277 294 -1 -
RSGLLAPVHSSATDDTR Q35984 509 -1 -
RSGLLASVHSFATDDTR CCBS_OENBE 499 -1 -
RSGVLTSVHAFASDPTR Q52732 294 -1 -
RSGVLTSVHAFATDPTR CCMF_RHIME 294 -1 -
RSGVITSVHAFATDPTR CCMF_BRAJA 294 -1 -
RSGVLTSVHAFAADPER Q51753 299 -1 -
RSGVLVSVHAFASDPAR CCMF_ECOLI 295 -1 -
RSGALTSVHAFALDNTR NRFE_HAEIN 294 -1 -
RSGLLASVHSFATDSTR CCBS_MARPO 400 -1 -
RSGILVSVHAFASDPTR CCMF_HAEIN 295 -1 -

Motif 8 width=20
Element Seqn Id St Int Rpt
RGLYILAYLVVVIGGSLALY CCMF_HAEIN 311 -1 -
RAVPLFSLFALISLASLALY NRFE_ECOLI 293 -1 -
RGIFLWRFFLLMTGISMILF CCBS_DAUCA 517 -1 -
RGQFIFCFLFFLFLIFIYLI O21277 310 -1 -
RGRFLWRFFLLITGISMTLF Q35984 525 -1 -
RGIFILIFLVIVIGCSLLLY Q9Z646 311 -1 -
RGVFILCILLIFIGGALSLF Q52820 312 -1 -
RGVFILFILAFFTGGALTLY CCMF_RHOCA 310 -1 -
RGVFILIFLLFVVGGSLTLF CCMF_PSEFL 316 -1 -
RGMFILAFMVLVIGGSLLLF CCMF_ECOLI 311 -1 -
RGVFILIFLLCVVGGSLTLF Q51753 315 -1 -
RGVFILLILCLFIGGSLSLF CCMF_BRAJA 310 -1 -
RGVFILAILIVFIGGAFSLF CCMF_RHIME 310 -1 -
RGVFILSILLIFIGGALSLF Q52732 310 -1 -
RGIFLWRFFLLMTGISMILF CCBS_OENBE 515 -1 -
RGYVLLLIFFVLTALAFGLF NRFE_HAEIN 310 -1 -
RGIFLWCFFLLITSISFLFF CCBS_MARPO 416 -1 -
RGVFILAILAFFLGGSLTLY O30977 310 -1 -