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PR01246

Identifier
RAD1REPAIR  [View Relations]  [View Alignment]  
Accession
PR01246
No. of Motifs
5
Creation Date
03-DEC-1999
Title
Rad1 repair protein signature
Database References
PRINTS; PR01245 RAD1REC1
INTERPRO; IPR003011
Literature References
1. LONG, K.E., SUNNERHAGEN, P. AND SUBRAMANI, S.
The Schizosaccharomyces pombe rad1 gene consists of three exons and the
cDNA sequence is partially homologous to the Ustilago maydis REC1 cDNA.
GENE 148 155-159 (1994). 

Documentation
The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes
a 37kDa protein that exhibits partial similarity to the REC1 gene of 
Ustilago maydis [2]. The two genes share putative functional similarities
in their respective organisms. 
 
RAD1REPAIR is a 5-element fingerprint that provides a signature for Rad1 DNA
repair proteins. The fingerprint was derived from an initial alignment of 5
sequences: the motifs were drawn from conserved regions spanning virtually
the full alignment length, focusing on those sections that characterise the
Rad1 proteins but distinguish them from members of the related Rec1 family.
A single iteration on SPTR37_10f was required to reach convergence, no
further sequences being identified beyond the starting set.
Summary Information
5 codes involving  5 elements
0 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
555555
400000
300000
200000
12345
True Positives
O60671        O70452        O75572        O88391        
RAD1_SCHPO
Sequence Titles
O60671      CELL CYCLE CHECKPOINT PROTEIN HRAD1 (DNA REPAIR EXONUCLEASE) - HOMO SAPIENS (HUM 
O70452 CELL CYCLE CHECKPOINT PROTEIN MRAD1 - MUS MUSCULUS (MOUSE).
O75572 RAD1 - HOMO SAPIENS (HUMAN).
O88391 RAD1P - MUS MUSCULUS (MOUSE).
RAD1_SCHPO DNA REPAIR PROTEIN RAD1 - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST).
Scan History
SPTR37_10f 1  70   NSINGLE    
Initial Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
TCFATKNGIKVTVE O60671 41 41 -
TCFATKNGIKVTVE O88391 41 41 -
TCFATKNGIKVTVE O75572 41 41 -
TCFATKNGIKVTVE O70452 41 41 -
TIEITSRGLRFAVE RAD1_SCHPO 26 26 -

Motif 2 width=17
Element Seqn Id St Int Rpt
VTFRINLTVLLDCLSIF O60671 80 25 -
VTFRINLTILLDCLSIF O88391 80 25 -
VTFRINLTVLLDCLSIF O75572 80 25 -
VTFRINLTILLDCLSIF O70452 80 25 -
YMFQTMISPLLQSLSIY RAD1_SCHPO 69 29 -

Motif 3 width=14
Element Seqn Id St Int Rpt
YPKDSDLMEAFHCN O60671 203 106 -
YPKDSDLVEAFHCN O88391 203 106 -
YPKDSDLMEAFHCN O75572 203 106 -
YPKDSDLVEAFHCD O70452 203 106 -
YPNEKSVLESFETD RAD1_SCHPO 209 123 -

Motif 4 width=19
Element Seqn Id St Int Rpt
YKISLLKPSTKALVLSCKV O60671 223 6 -
YKLSLLKPSTKALALSCKV O88391 223 6 -
YKISLLKPSTKALVLSCKV O75572 223 6 -
YKLSLLKPSTKALALSCKV O70452 223 6 -
YRFSLIRHALKALQVGSKV RAD1_SCHPO 229 6 -

Motif 5 width=14
Element Seqn Id St Int Rpt
QYMIRNEDGQICFV O60671 254 12 -
QYMIRNEDGQICFV O88391 254 12 -
QYMIRNEDGQICFV O75572 254 12 -
QYMIRNEDGQICFV O70452 254 12 -
QIMLVGQEGLCTFV RAD1_SCHPO 260 12 -
Final Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
TCFATKNGIKVTVE O60671 41 41 -
TCFATKNGIKVTVE O88391 41 41 -
TCFATKNGIKVTVE O75572 41 41 -
TCFATKNGIKVTVE O70452 41 41 -
TIEITSRGLRFAVE RAD1_SCHPO 26 26 -

Motif 2 width=17
Element Seqn Id St Int Rpt
VTFRINLTVLLDCLSIF O60671 80 25 -
VTFRINLTILLDCLSIF O88391 80 25 -
VTFRINLTVLLDCLSIF O75572 80 25 -
VTFRINLTILLDCLSIF O70452 80 25 -
YMFQTMISPLLQSLSIY RAD1_SCHPO 69 29 -

Motif 3 width=14
Element Seqn Id St Int Rpt
YPKDSDLMEAFHCN O60671 203 106 -
YPKDSDLVEAFHCN O88391 203 106 -
YPKDSDLMEAFHCN O75572 203 106 -
YPKDSDLVEAFHCD O70452 203 106 -
YPNEKSVLESFETD RAD1_SCHPO 209 123 -

Motif 4 width=19
Element Seqn Id St Int Rpt
YKISLLKPSTKALVLSCKV O60671 223 6 -
YKLSLLKPSTKALALSCKV O88391 223 6 -
YKISLLKPSTKALVLSCKV O75572 223 6 -
YKLSLLKPSTKALALSCKV O70452 223 6 -
YRFSLIRHALKALQVGSKV RAD1_SCHPO 229 6 -

Motif 5 width=14
Element Seqn Id St Int Rpt
QYMIRNEDGQICFV O60671 254 12 -
QYMIRNEDGQICFV O88391 254 12 -
QYMIRNEDGQICFV O75572 254 12 -
QYMIRNEDGQICFV O70452 254 12 -
QIMLVGQEGLCTFV RAD1_SCHPO 260 12 -