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PR01183

Identifier
RIBORDTASEM1  [View Relations]  [View Alignment]  
Accession
PR01183
No. of Motifs
6
Creation Date
19-SEP-1999
Title
Ribonucleotide reductase large chain signature 
Database References

PROSITE; PS00089 RIBORED_LARGE
BLOCKS; BL00089
INTERPRO; IPR000788
PDB; 1RLR; 1R1R; 2R1R
SCOP; 1RLR
CATH; 1RLR
Literature References
1. NILSSON, O., LUNDQVIST, T., HAHNE, S. AND SJOBERG, B.-M.
Structure-function studies of the large subunit of ribonucleotide reductase
from Escherichia coli. 
BIOCHEM.SOC.TRANS. 16 91-94 (1988).
 
2. REICHARD, P.
From RNA to DNA, why so many ribonucleotide reductases?
SCIENCE 260 1773-1777 (1993).
 
3. ERIKSSON, M., UHLIN, U., S.R., EKBERG, M., REGNSTROM, K., SJOBERG, B.M.
AND EKLUND, H.
Binding of allosteric effectors to ribonucleotide reductase protein R1:
reduction of active-site cysteines promotes substrate binding.
STRUCTURE 5 1077-1092 (1997). 
 
4. UHLIN, U. AND EKLUND, H.
Structure of ribonucleotide reductase protein R1.
NATURE 370 533-539 (1994). 
 
5. CARAS, I.W., LEVINSON, B.B., FABRY, M., WILLIAMS, S.R. AND MARTIN, D.W.JR.
Cloned mouse ribonucleotide reductase subunit M1 cDNA reveals amino acid
sequence homology with Escherichia coli and herpesvirus ribonucleotide 
reductases.
J.BIOL.CHEM. 260 7015-7022 (1985). 

Documentation
Ribonucleotide reductase catalyses the reductive synthesis of deoxy-
ribonucleotides from their corresponding ribonucleotides, providing the
necessary precursors for DNA synthesis [1,2]. The enzyme comprises two 
dimers (termed R1 and R2), and contains several redox active cysteine 
residues. The reduction of ribonucleotides to deoxyribonucleotides involves
the transfer of free radicals [3]. The radical-based reaction involves five
cysteines: two of these are located at adjacent anti-parallel strands in a
new type of ten-stranded alpha/beta-barrel; two others reside at the
carboxyl end in a flexible arm; and the fifth, in a loop in the centre of
the barrel, is positioned to initiate the radical reaction [4]. 
 
There are several regions of similarity in the sequence of the large 
chain of prokaryotes, eukaryotes and viruses spread across 3 domains:
an N-terminal domain common to the mammalian and bacterial enzymes; a
C-terminal domain common to the mammalian and viral ribonucleotide 
reductases; and a central domain common to all three [3]. 
 
RIBORDTASEM1 is a 6-element fingerprint that provides a signature for
ribonucleotide reductase M1 (large) chains. The fingerprint was derived
from an initial alignment of 11 sequences: the motifs were drawn from short
conserved regions spanning the C-terminal half of the alignment. Five 
iterations on SPTR37_10f were required to reach convergence, at which point
a true set comprising 63 sequences was identified. Several partial matches
were also found, all of which are ribonucleotide reductases and homologues
that fail to match one or more motifs.
Summary Information
  63 codes involving  6 elements
4 codes involving 5 elements
3 codes involving 4 elements
3 codes involving 3 elements
8 codes involving 2 elements
Composite Feature Index
6636363636363
5431444
4312303
3200313
2042613
123456
True Positives
O12935        O28609        O33839        O36411        
O39263 O41111 O41269 O41962
O53767 O54196 O66503 O69273
O69981 O72889 O82573 O84834
P74911 P88952 P89462 Q47412
Q66663 Q9YTK6 Q9Z6S5 Q9ZLF9
Q9ZR56 Q9ZR57 RIR1_ASFB7 RIR1_ASFM2
RIR1_BPT4 RIR1_BRARE RIR1_CAEEL RIR1_CRYPV
RIR1_EBV RIR1_ECOLI RIR1_HAEIN RIR1_HELPY
RIR1_HSV11 RIR1_HSV23 RIR1_HSVBC RIR1_HSVE4
RIR1_HSVEB RIR1_HSVSA RIR1_HUMAN RIR1_MOUSE
RIR1_MYCGE RIR1_MYCPN RIR1_MYCTU RIR1_PLAF4
RIR1_PLAFG RIR1_PRVKA RIR1_SALTY RIR1_SCHPO
RIR1_SYNY3 RIR1_TREPA RIR1_TRYBB RIR1_VACCC
RIR1_VACCV RIR1_VARV RIR1_VZVD RIR1_YEAST
RIR3_ECOLI RIR3_SALTY RIR3_YEAST
True Positive Partials
Codes involving 5 elements
O26748 Q89942 Q9Z5C8 Q9ZD34
Codes involving 4 elements
O58101 P95484 RIR1_BACSU
Codes involving 3 elements
O55716 O64173 RIR1_HCMVA
Codes involving 2 elements
O10288 O31874 Q89941 Q9YMI0
RIR1_HSV6U RIR1_HSV7J VG50_BPMD2 VG50_BPML5
Sequence Titles
O12935      RIBONUCLEOTIDE REDUCTASE - SPODOPTERA EXIGUA NUCLEOPOLYHEDROVIRUS. 
O28609 RIBONUCLEOTIDE REDUCTASE (NRD) - ARCHAEOGLOBUS FULGIDUS.
O33839 RIBONUCLEOTIDE REDUCTASE - THERMOTOGA MARITIMA.
O36411 RIBONUCLEOTIDE-REDUCTASE, LARGE SUBUNIT - ALCELAPHINE HERPESVIRUS 1 (WILDEBEEST
O39263 COUNTERPART OF HSV-1 GENE UL39 AND VZV GENE 19 - EQUINE HERPESVIRUS 4.
O41111 A629R PROTEIN - PARAMECIUM BURSARIA CHLORELLA VIRUS 1 (PBCV-1).
O41269 RIBONUCLEOTIDE REDUCTASE - SPODOPTERA LITTORALIS NUCLEAR POLYHEDROSIS VIRUS (SLN
O41962 RIBONUCLEOTIDE REDUCTASE LARGE - MURINE HERPESVIRUS 68.
O53767 HYPOTHETICAL 74.5 KD PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
O54196 VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE - STREPTOMYCES CLAVULIGERUS.
O66503 RIBONUCLEOTIDE REDUCTASE ALPHA CHAIN - AQUIFEX AEOLICUS.
O69273 RIBONUCLEOTIDE REDUCTASE SUBUNIT R1E - CORYNEBACTERIUM AMMONIAGENES (BREVIBACTER
O69981 RIBONUCLEOTIDE REDUCTASE - STREPTOMYCES COELICOLOR.
O72889 RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT (EC 1.17.4.1) - FELINE HERPESVIRUS (FELID
O82573 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE SUBUNIT - ARABIDOPSIS THALIANA (MOUSE
O84834 RIBONUCLEOSIDE REDUCTASE, LARGE CHAIN - CHLAMYDIA TRACHOMATIS.
P74911 RIBONUCLEOTIDE REDUCTASE - THERMOPLASMA ACIDOPHILUM.
P88952 RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT (ORF 61) - KAPOSI'S SARCOMA-ASSOCIATED HE
P89462 RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT - HERPES SIMPLEX VIRUS (TYPE 2).
Q47412 RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE B1 SUBUNIT ALPHA-PRIME-POLYPEPTIDE PRECURSO
Q66663 RIBONUCLEOTIDE REDUCTASE, LARGE SUBUNIT - EQUINE HERPESVIRUS 2.
Q9YTK6 LARGE SUBUNIT OF RIBONUCLEOTIDE REDUCTASE - ATELINE HERPESVIRUS 3.
Q9Z6S5 RIBONUCLEOSIDE REDUCTASE, LARGE CHAIN - CHLAMYDIA PNEUMONIAE.
Q9ZLF9 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN - HELICOBACTER PYLORI J99.
Q9ZR56 RIBONUCLEOTIDE REDUCTASE - NICOTIANA TABACUM (COMMON TOBACCO).
Q9ZR57 RIBONUCLEOTIDE REDUCTASE - NICOTIANA TABACUM (COMMON TOBACCO).
RIR1_ASFB7 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_ASFM2 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_BPT4 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_BRARE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE REDU
RIR1_CAEEL PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUC
RIR1_CRYPV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_EBV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_ECOLI RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE
RIR1_HAEIN RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HELPY RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSV11 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSV23 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSVBC RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSVE4 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSVEB RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSVSA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HUMAN RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE REDU
RIR1_MOUSE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE REDU
RIR1_MYCGE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_MYCPN RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_MYCTU RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_PLAF4 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_PLAFG RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_PRVKA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_SALTY RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE
RIR1_SCHPO RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_SYNY3 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_TREPA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_TRYBB RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_VACCC RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_VACCV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_VARV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_VZVD RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_YEAST RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN 1 (EC 1.17.4.1) (RIBONUCLEOTIDE
RIR3_ECOLI RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE
RIR3_SALTY RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE
RIR3_YEAST RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN 2 (EC 1.17.4.1) (RIBONUCLEOTIDE

O26748 RIBONUCLEOTIDE REDUCTASE, LARGE SUBUNIT - METHANOBACTERIUM THERMOAUTOTROPHICUM.
Q89942 RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT - TURKEY HERPESVIRUS.
Q9Z5C8 RIBONUCELOTIDE REDUCTASE MAJOR SUBUNIT - STAPHYLOCOCCUS AUREUS.
Q9ZD34 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (NRDA) - RICKETTSIA PROWAZEKII

O58101 1291AA LONG HYPOTHETICAL RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE - PYROCOCCUS HORIK
P95484 RIBONUCLEOTIDE REDUCTASE - PYROCOCCUS FURIOSUS.
RIR1_BACSU RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R

O55716 PUTATIVE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN - CHILO IRIDESCENT VIR
O64173 RIBUNUCLEOTIDE REDUCTASE LARGE SUBUNIT - BACTERIOPHAGE SPBC2.
RIR1_HCMVA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R

O10288 RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT - ORGYIA PSEUDOTSUGATA NUCLEAR POLYHEDROS
O31874 YOSO PROTEIN (RIBONUCLEOTIDE REDUCTASE HOMOLOG) - BACILLUS SUBTILIS.
Q89941 RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT - HUMAN HERPESVIRUS 6.
Q9YMI0 RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT HOMOLOG - LYMANTRIA DISPAR MULTICAPSID NU
RIR1_HSV6U RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
RIR1_HSV7J RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN (EC 1.17.4.1) (RIBONUCLEOTIDE R
VG50_BPMD2 PUTATIVE ADENOSYLCOBALAMIN-DEPENDENT RIBONUCLEOTIDE REDUCTASE (EC 1.17.4.2) (GP5
VG50_BPML5 PUTATIVE ADENOSYLCOBALAMIN-DEPENDENT RIBONUCLEOTIDE REDUCTASE (EC 1.17.4.2) (GP5
Scan History
SPTR37_10f 5  100  NSINGLE    
Initial Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
RPGAFAIYLEPWHLDIFEFL RIR1_MOUSE 293 293 -
RPGVMAIYLEPWHSDIMAFL RIR1_VACCC 293 293 -
RPTGACVYLEPWHTDVRAVL RIR1_HSV11 650 650 -
RPGAYAVYLELWHQDIFTFL RIR1_ASFB7 266 266 -
RPTGVCVYFEPWHADIRAIL RIR1_HSVEB 294 294 -
RPTGVCVYVEPWHADVRAVL RIR1_PRVKA 348 348 -
RPTGVCVYIEPWHVDLQTVL RIR1_VZVD 286 286 -
RGGAATLYYPIWHLEAENLL RIR1_HAEIN 298 298 -
RGGAATLFYPMWHLEVESLL RIR1_SALTY 298 298 -
RQGAGAVYLHAHHPDIYRFL RIR1_MYCTU 230 230 -
RGGAATAYYPIWHLEVENLL RIR1_BPT4 295 295 -

Motif 2 width=12
Element Seqn Id St Int Rpt
IKCSNLCTEIVE RIR1_MOUSE 423 110 -
IKCSNLCTEIIQ RIR1_VACCC 423 110 -
IAGSNLCTEIVH RIR1_HSV11 787 117 -
ITNSNLCIEVTI RIR1_ASFB7 415 129 -
IMGSNLCTEIIQ RIR1_HSVEB 432 118 -
LATSNLCTEIVQ RIR1_PRVKA 485 117 -
ITGSNLCTEIVQ RIR1_VZVD 423 117 -
VRQSNLCLEIAL RIR1_HAEIN 433 115 -
VRQSNLCLEIAL RIR1_SALTY 433 115 -
ITHSNLCSEILQ RIR1_MYCTU 361 111 -
IRQSNLCCEIAI RIR1_BPT4 431 116 -

Motif 3 width=24
Element Seqn Id St Int Rpt
YDFEKLAEVTKVIVRNLNKIIDIN RIR1_MOUSE 461 26 -
FDFLKLKDVVKVIVRNLNKIIDIN RIR1_VACCC 460 25 -
FDFGRLRDAVQACVLMVNIMIDST RIR1_HSV11 824 25 -
YDYRGLIEASGNVTENLDNIIDNG RIR1_ASFB7 455 28 -
FDFAALGRAAATATIFVNSMMRAG RIR1_HSVEB 477 33 -
FDFAALRRAARVAAVFVNAMMRIG RIR1_PRVKA 522 25 -
FNLNDLQLTARTTVIFLNGVLAAG RIR1_VZVD 462 27 -
ENLDELEELADLAVRSLDALLDYQ RIR1_HAEIN 473 28 -
KTLDELEELAILAVRALDALLDYQ RIR1_SALTY 473 28 -
MDSPDFAQTIEVAIRALTAVSDQT RIR1_MYCTU 405 32 -
QDQDKINELAEVQVRALDNLLDYQ RIR1_BPT4 470 27 -

Motif 4 width=23
Element Seqn Id St Int Rpt
RPIGIGVQGLADAFILMRYPFES RIR1_MOUSE 499 14 -
RPIGIGVQGLADAFILLNYPFDS RIR1_VACCC 498 14 -
RSMGIGMQGLHTACLKLGLDLES RIR1_HSV11 862 14 -
RPIGIGVFGLADVFASLKMKFGS RIR1_ASFB7 493 14 -
RSLGLGIQGLHTAFLMLDLDMAS RIR1_HSVEB 515 14 -
RSLGIGLQGLHTTVLALDMDMAD RIR1_PRVKA 560 14 -
RSLGIGIQGLHTTCLRLGFDLTS RIR1_VZVD 500 14 -
RSLGIGVINYAYYLAKNGVRYSD RIR1_HAEIN 511 14 -
RTLGIGVINFAYWLAKNGKRYSD RIR1_SALTY 511 14 -
HAIGLGQMNLHGYLARERIFYGS RIR1_MYCTU 444 15 -
RNLGVGVTNYAAWLASNFASYED RIR1_BPT4 507 13 -

Motif 5 width=24
Element Seqn Id St Int Rpt
LNKQIFETIYYGALEASCELAKEY RIR1_MOUSE 527 5 -
LNKKIFETIYYGALEASCELAEKE RIR1_VACCC 526 5 -
LNKHIAEVMLLSAMKTSNALCVRG RIR1_HSV11 890 5 -
MDEAIHAALYYGAMRRSIELAKEK RIR1_ASFB7 521 5 -
LNKQIAERLLLNSMKASATLCRLG RIR1_HSVEB 543 5 -
LNAAIAEELLYGVMDASVELCERG RIR1_PRVKA 588 5 -
LNVQIAELMLYETMKTSMEMCKIG RIR1_VZVD 528 5 -
LTHRTFEAIQYYLLKASMNLAKEQ RIR1_HAEIN 539 5 -
LTHKTFEAIQYYLLKASNELAKEQ RIR1_SALTY 539 5 -
FTNIYFYTVLYHALRASNRIAIER RIR1_MYCTU 472 5 -
LTHELFERLQYGLIKASIKLAKEK RIR1_BPT4 533 3 -

Motif 6 width=28
Element Seqn Id St Int Rpt
GIRNSLLIAPMPTASTAQILGNNESIEP RIR1_MOUSE 592 41 -
GLRNSLLVAPMPTASTAQILGNNESVEP RIR1_VACCC 591 41 -
GLRNSQFVALMPTAASAQISDVSEGFAP RIR1_HSV11 957 43 -
GVRNGYLTALMPTATSSNSTGKNECFEP RIR1_ASFB7 602 57 -
GLYNSQFVAYMPTVSSSQVTESSEGFSP RIR1_HSVEB 610 43 -
GVYNAQFVALMPTVSSSQVTESSEGFSP RIR1_PRVKA 655 43 -
GLYNSQFLALMPTVSSAQVTECSEGFSP RIR1_VZVD 595 43 -
GLRNSTLTALMPSETSSQISNATNGIEP RIR1_HAEIN 610 47 -
GLRNSTLSALMPSETSSQISNATNGIEP RIR1_SALTY 610 47 -
GIYNQNLQAVPPTGSISYINHSTSSIHP RIR1_MYCTU 556 60 -
GIRNSTLSALMPCESSSQVSNSTNGYEP RIR1_BPT4 604 47 -
Final Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
RPGAFAIYLEPWHLDIFEFL RIR1_MOUSE 293 293 -
RPGAFAIYLEPWHLDIFEFL RIR1_HUMAN 293 293 -
RPGVMAIYLEPWHSDIMAFL RIR1_VACCC 293 293 -
RPGVMAIYLEPWHSDIMAFL RIR1_VACCV 293 293 -
RKGAFAVYLEPWHSDIFEFL Q9ZR56 293 293 -
RPGVMTIYLEPWHSDIMAFL RIR1_VARV 293 293 -
RKGAFAVYLEPWHADVYEFL O82573 293 293 -
RKGAFAVYLDPWHADIFEFL Q9ZR57 293 293 -
RPGAFAIYLEPWHADIFEFV RIR1_CAEEL 299 299 -
RPGAFAMYLEPWHFDIFDFL RIR1_BRARE 293 293 -
RKGAFAIYLEPWHADIFGFL RIR1_TRYBB 303 303 -
RKGSFAVYIEPWHSDIFEFL RIR1_PLAF4 291 291 -
RPGAFAAYLEPWHADVMDFL RIR1_SCHPO 293 293 -
RKGAIAIYLEPWHVDVVEFI RIR1_CRYPV 291 291 -
RPGAFAVYVEPWHADVFDFL O41269 292 292 -
RPGAFALYLEPWHADIFDFI RIR1_YEAST 293 293 -
RKGALAAYIEPWHPEIYEFL O12935 277 277 -
RKGSYAVYIEPWHSDIFEFL RIR1_PLAFG 292 292 -
RPGAFALFLEPWHADIFDFV RIR3_YEAST 293 293 -
RKGSFAIYLEPHHPDIMDFL O41111 305 305 -
RPGAYAVYLELWHQDIFTFL RIR1_ASFM2 267 267 -
RPVSVATYIEMWHCQIHEFL Q9YTK6 257 257 -
RQGSVAVYLDVWHKDIPEFL RIR1_TREPA 392 392 -
RKGAVCVYLEVWHLDYEDFL O84834 537 537 -
RPTGACVYLEPWHTDVRAVL RIR1_HSV11 650 650 -
RPTGACVYLEPWHSDVRAVL P89462 655 655 -
RPGAYAVYLELWHQDIFTFL RIR1_ASFB7 266 266 -
RPTGACVYLEPWHSDVRAVL RIR1_HSV23 657 657 -
RPVSVATYIEVWHCQIHEFL RIR1_HSVSA 257 257 -
RPVGASAYMELWHSQICDFL P88952 280 280 -
RPTGVCVYFEPWHADIRAIL RIR1_HSVE4 293 293 -
RPTGVCVYFEPWHADIRAIL O39263 293 293 -
RKGAMCVYLENWHLDYEDFL Q9Z6S5 529 529 -
RPTGVCVYFEPWHADIRAIL RIR1_HSVEB 294 294 -
RKGAIAVYLEIWHIDVMEFI Q9ZLF9 289 289 -
RKGAIAVYLEIWHIDVMEFI RIR1_HELPY 289 289 -
RPVSVAAYMELWHEQIEEFL Q66663 273 273 -
RPTGICVYLEPWHCDVRAVL RIR1_HSVBC 295 295 -
RPTGVCVYVEPWHADVRAVL RIR1_PRVKA 348 348 -
RPTGVCVYIEPWHVDLQTVL RIR1_VZVD 286 286 -
RPVSVAAYMEIWHTNIMDFL O41962 260 260 -
RKGSASITLDIWHKDILDFL O66503 308 308 -
RPTGVCIYVEPWHADIRSIL O72889 292 292 -
RQGAGAVYLHAHHPDILRFL RIR3_ECOLI 250 250 -
RPVSVAAYMEVWHSQIQEFL O36411 258 258 -
RGGAATLYYPIWHLEAENLL RIR1_HAEIN 298 298 -
RGGAATLFYPMWHLEVESLL RIR1_ECOLI 298 298 -
RGGAATLFYPMWHLEVESLL RIR1_SALTY 298 298 -
RQGAGAVYLHAHHPDILRFL RIR3_SALTY 250 250 -
RQGAGAVYLNAHHPDILNFL O69273 256 256 -
RQGAGAVYLHAHHPDIYRFL RIR1_MYCTU 230 230 -
RQGAGAVYLHAHHPDVMQFL RIR1_MYCPN 249 249 -
RQGAGAVYLHCHHPDVMQFL RIR1_MYCGE 249 249 -
RGGAATAYYPIWHLEVENLL RIR1_BPT4 295 295 -
RRGACMAVLDVSHPDICDFV O53767 266 266 -
RRGALMGILNINHPDIEEFI O33839 207 207 -
RPVSVAAYMEPWHSQIFKFL RIR1_EBV 252 252 -
RRGANMGVLNVHHPDIEEFI O28609 159 159 -
RRGANMGILNYNHPDIMEFI P74911 323 323 -
RAGAVTVGLDVWHLDVPEFL RIR1_SYNY3 317 317 -
GRRCGNVFYPMWHLEVESLL Q47412 296 296 -
RRAAKMVILDVDHPDIEDFI O69981 233 233 -
RRAAKMVILDVDHPDIEGFI O54196 233 233 -

Motif 2 width=12
Element Seqn Id St Int Rpt
IKCSNLCTEIVE RIR1_MOUSE 423 110 -
IKCSNLCTEIVE RIR1_HUMAN 423 110 -
IKCSNLCTEIIQ RIR1_VACCC 423 110 -
IKCSNLCTEIIQ RIR1_VACCV 423 110 -
IKSSNLCTEIIE Q9ZR56 423 110 -
IKCSNLCTEIIQ RIR1_VARV 423 110 -
IKSSNLCTEIIE O82573 423 110 -
IKSSNLCTEIIE Q9ZR57 423 110 -
IKCSNLCTEIIE RIR1_CAEEL 429 110 -
IKCSNLCTEIVE RIR1_BRARE 423 110 -
IKCSNLCTEIVE RIR1_TRYBB 433 110 -
IKCSNLCCEIIE RIR1_PLAF4 421 110 -
IRCSNLCTEIVE RIR1_SCHPO 423 110 -
IVSSNLCTEIIE RIR1_CRYPV 421 110 -
IKCSNLCTEIVE O41269 422 110 -
IKSSNLCCEIVE RIR1_YEAST 422 109 -
IKCSNLCAEIVQ O12935 407 110 -
IKCSNLCCEIIE RIR1_PLAFG 421 109 -
IKSSNLCCEIVE RIR3_YEAST 422 109 -
IRGSNLCIEILE O41111 435 110 -
ITNSNLCIEITI RIR1_ASFM2 416 129 -
INCSNLCAEIVQ Q9YTK6 388 111 -
IYCSNLCTEIAQ RIR1_TREPA 530 118 -
VRCSNLCTEILL O84834 672 115 -
IAGSNLCTEIVH RIR1_HSV11 787 117 -
IAGSNLCTEIVH P89462 792 117 -
ITNSNLCIEVTI RIR1_ASFB7 415 129 -
IAGSNLCTEIVH RIR1_HSV23 794 117 -
INCSNLCAEIVQ RIR1_HSVSA 388 111 -
INCSNLCAEIVQ P88952 411 111 -
IMGSNLCTEIIQ RIR1_HSVE4 431 118 -
IMGSNLCTEIIQ O39263 431 118 -
VRCSNLCTEILL Q9Z6S5 664 115 -
IMGSNLCTEIIQ RIR1_HSVEB 432 118 -
IRSSNLCTEIFQ Q9ZLF9 420 111 -
IRSSNLCTEIFQ RIR1_HELPY 420 111 -
ISYANLCAEVVQ Q66663 404 111 -
LTGSNLCTEIVQ RIR1_HSVBC 432 117 -
LATSNLCTEIVQ RIR1_PRVKA 485 117 -
ITGSNLCTEIVQ RIR1_VZVD 423 117 -
INCANLCAEVIQ O41962 394 114 -
VYSSNLCHEIVQ O66503 479 151 -
LTTSNLCTEIIQ O72889 429 117 -
INMSNLCSEILQ RIR3_ECOLI 381 111 -
IASANLCAEVIQ O36411 389 111 -
VRQSNLCLEIAL RIR1_HAEIN 433 115 -
VRQSNLCLEIAL RIR1_ECOLI 433 115 -
VRQSNLCLEIAL RIR1_SALTY 433 115 -
INMSNLCSEILQ RIR3_SALTY 381 111 -
INMSNLCSEILQ O69273 388 112 -
ITHSNLCSEILQ RIR1_MYCTU 361 111 -
IVMSNLCSEIVQ RIR1_MYCPN 380 111 -
IVMSNLCSEIVQ RIR1_MYCGE 380 111 -
IRQSNLCCEIAI RIR1_BPT4 431 116 -
IEATNPCGEVPL O53767 371 85 -
INSTNPCGEIGL O33839 316 89 -
MNAANLCAEVLQ RIR1_EBV 383 111 -
IEATNPCGEQPL O28609 263 84 -
IESTNPCGEQPL P74911 428 85 -
IPGTNLCCESFS RIR1_SYNY3 456 119 -
VRQSNLCLEIAL Q47412 431 115 -
INGSNPCSEYMH O69981 360 107 -
INGSNPCSEYMH O54196 360 107 -

Motif 3 width=24
Element Seqn Id St Int Rpt
YDFEKLAEVTKVIVRNLNKIIDIN RIR1_MOUSE 461 26 -
YDFKKLAEVTKVVVRNLNKIIDIN RIR1_HUMAN 461 26 -
FDFLKLKDVVKVIVRNLNKIIDIN RIR1_VACCC 460 25 -
FDFLKLKDVVKVIVRNLNKIIDIN RIR1_VACCV 460 25 -
FDFAKLAEVTALVTTNLNKIIDVN Q9ZR56 480 45 -
FDFLKLKDVVKVIVRNLNKIIDIN RIR1_VARV 460 25 -
FDFEKLAEVTATVTVNLNKIIDVN O82573 480 45 -
FDFDKLAEVTALVTTNLNKIIDVN Q9ZR57 480 45 -
FDFVKLAEVTKVITRNLNKIIDVN RIR1_CAEEL 467 26 -
FDFQKLASVTKVIVKNLNKIIDIN RIR1_BRARE 461 26 -
FDYVALKEVTKVVTRNLNRVIDRN RIR1_TRYBB 470 25 -
FNFKKLYEITKIITRNLDKIIERN RIR1_PLAF4 460 27 -
YNFQKLHDVVKVVTRNLNKIIDVN RIR1_SCHPO 460 25 -
FDFDKLKEVTKVITRNLNKLIDVG RIR1_CRYPV 460 27 -
YDFERLKEITKSCDRNLNRIIDAN O41269 461 27 -
YNFKKLHEIAKVVTRNLNRVIDRN RIR1_YEAST 465 31 -
FDYVLLKHLTKIIVRNLNKIIDVN O12935 446 27 -
FNFKKLYEITKIITRNLDKIIERN RIR1_PLAFG 460 27 -
YNFERLHEIAKVITHNLNRVIDRN RIR3_YEAST 465 31 -
FDFDDLRKNVKILAKNLDRSIDVM O41111 472 25 -
YDYRGLIEAAGNVTENLDNIIDNG RIR1_ASFM2 456 28 -
FDFLKLEYAVQAAVFIINACILAP Q9YTK6 434 34 -
SDDKELREVVRVAVRALDNVIDLT RIR1_TREPA 587 45 -
LDEEKLSETISIAVRMLDNVIDIN O84834 709 25 -
FDFGRLRDAVQACVLMVNIMIDST RIR1_HSV11 824 25 -
FDFGRLRDAVQACVLMVNIMIDST P89462 829 25 -
YDYRGLIEASGNVTENLDNIIDNG RIR1_ASFB7 455 28 -
FDFGMLRDAVQACVLMVNIMIDST RIR1_HSV23 831 25 -
FDFSKLEYAVQAAVFIINACILSP RIR1_HSVSA 434 34 -
FCFEALGDAVRVAVLVINACILGG P88952 460 37 -
FDFAALGRAAATATIFVNAMMCAS RIR1_HSVE4 476 33 -
FDFAALGRAAATATIFVNAMMCAS O39263 476 33 -
LDEEKLKETISIAIRILDNVIDLN Q9Z6S5 701 25 -
FDFAALGRAAATATIFVNSMMRAG RIR1_HSVEB 477 33 -
NTEEDIKRVVPIMVRLLDNVIDLN Q9ZLF9 508 76 -
NTEEDIKRVVPIMVRLLDNVIDLN RIR1_HELPY 508 76 -
FCFDTLRAAVRAAVYMINASILGG Q66663 465 49 -
FDFAALSTAAATAAIFVNAMMLGG RIR1_HSVBC 474 30 -
FDFAALRRAARVAAVFVNAMMRIG RIR1_PRVKA 522 25 -
FNLNDLQLTARTTVIFLNGVLAAG RIR1_VZVD 462 27 -
FSIERLERATEAAVFIINACIHGG O41962 444 38 -
HTEEEIKEVLPLLVRMLDNVIEMN O66503 532 41 -
FSIPLLIRAAYTATIFVNPMMRAG O72889 472 31 -
MDSPDFARTVETAVRGLTAVSDMS RIR3_ECOLI 425 32 -
FSMPILHAAVEVAVFLVNCAIAGG O36411 450 49 -
ENLDELEELADLAVRSLDALLDYQ RIR1_HAEIN 473 28 -
NNLDELEELAILAVRALDALLDYQ RIR1_ECOLI 473 28 -
KTLDELEELAILAVRALDALLDYQ RIR1_SALTY 473 28 -
MDSPDIGRTVETAIRGLTAVSDMS RIR3_SALTY 425 32 -
MDSPDFGGTVEAAIRGLTAVADKT O69273 432 32 -
MDSPDFAQTIEVAIRALTAVSDQT RIR1_MYCTU 405 32 -
ESGPEFSELVKLAIESLDLVSRVS RIR1_MYCPN 425 33 -
ESGSELAELIQLAIESLDLVSRIS RIR1_MYCGE 425 33 -
QDQDKINELAEVQVRALDNLLDYQ RIR1_BPT4 470 27 -
VDWDRLEEVAGVAVRFLDDVIDVS O53767 404 21 -
VDLEALQELVQIAVRFLDNVIDVN O33839 349 21 -
FSLARLRDATQCATFVVACSILQG RIR1_EBV 454 59 -
IDWDGLREVVWIAVRFLDDVIDVN O28609 296 21 -
IDFDRLRETVWTATRFLDDVIDAN P74911 462 22 -
LDLQDIAGVSQIAVRMLDNTIELT RIR1_SYNY3 488 20 -
NNLDELEELAILAVRALDALLDYQ Q47412 471 28 -
FDAERFSKVVELVITAMDISICFA O69981 398 26 -
FDVERFAKVVELVITAMDISICFA O54196 398 26 -

Motif 4 width=23
Element Seqn Id St Int Rpt
RPIGIGVQGLADAFILMRYPFES RIR1_MOUSE 499 14 -
RPIGIGVQGLADAFILMRYPFES RIR1_HUMAN 499 14 -
RPIGIGVQGLADAFILLNYPFDS RIR1_VACCC 498 14 -
RPIGIGVQGLADAFILLNYPFDS RIR1_VACCV 498 14 -
RPIGLGVQGLADTFILLGMSFDS Q9ZR56 518 14 -
RPIGIGVQGLADAFILLNYPFDS RIR1_VARV 498 14 -
RPIGIGVQGLADAFILLGMPFDS O82573 518 14 -
RPIGIGVQGLADTFMLLGMAFDS Q9ZR57 518 14 -
RPIGLGVQGLADCFMLMRYPFTS RIR1_CAEEL 505 14 -
RPIGIGVQGLADAFILMRFPFES RIR1_BRARE 499 14 -
RPVGIGVQGLADAFALLSLPFAH RIR1_TRYBB 508 14 -
RPIGIGVQGLADTFMLLRYPYES RIR1_PLAF4 498 14 -
RPVGLGVQGLADAFFALRLPFES RIR1_SCHPO 498 14 -
RPLGIGIQGLADCFMMLRMPYES RIR1_CRYPV 498 14 -
RPIGIGVQGMADAFVTMRMPFES O41269 499 14 -
RPIALGVQGLADTFMLLRLPFDS RIR1_YEAST 503 14 -
RPIGVGIQGLADAFVLLDIAYDS O12935 484 14 -
RPIGIGVQGLADTFMLLRYLYES RIR1_PLAFG 498 14 -
RPIALGVQGLADTYMMLRLPFES RIR3_YEAST 503 14 -
RPIGVGVQGLQDVFFKLKLPFDS O41111 510 14 -
RPIGIGVFGLADVFASLKMKFGS RIR1_ASFM2 494 14 -
RSMGIGCQGLADVFSEMGYGYLD Q9YTK6 470 12 -
RAIGLGVSGYHHVLAQQGIDWES RIR1_TREPA 625 14 -
RAIGLGVMGFQDALYKLDISYAS O84834 747 14 -
RSMGIGMQGLHTACLKLGLDLES RIR1_HSV11 862 14 -
RSMGIGMQGLHTACLKMGLDLES P89462 867 14 -
RPIGIGVFGLADVFASLKMKFGS RIR1_ASFB7 493 14 -
RSMGIGMQGLHTACLKMGLDLES RIR1_HSV23 869 14 -
RSMGIGCHGLADVFSEMGYGYLD RIR1_HSVSA 470 12 -
RSMGIGVQGLADVFAELGYGYLD P88952 497 13 -
RSLGLGIQGLHTTFLMLDLDMAS RIR1_HSVE4 514 14 -
RSLGLGIQGLHTTFLMLDLDMAS O39263 514 14 -
RAVGLGVMGFQDVLYELNISYAS Q9Z6S5 739 14 -
RSLGLGIQGLHTAFLMLDLDMAS RIR1_HSVEB 515 14 -
RAIGLGVMGEAQMLAEHQIAWGS Q9ZLF9 546 14 -
RAIGLGVMGEAQMLAEHQIAWGS RIR1_HELPY 546 14 -
RSAGIGVQGLADVFAKLGRGYMD Q66663 502 13 -
RSLGIGFQGLHTLLLELGMDMLS RIR1_HSVBC 512 14 -
RSLGIGLQGLHTTVLALDMDMAD RIR1_PRVKA 560 14 -
RSLGIGIQGLHTTCLRLGFDLTS RIR1_VZVD 500 14 -
RSMGIGVQGLADTFAMMGLGYFD O41962 481 13 -
RAIGIGVSNYHYCLVKNGIKWES O66503 570 14 -
RSLGLGIQGLHTTFLALEMDMVS O72889 510 14 -
HAIGLGQMNLHGYLAREGIAYGS RIR3_ECOLI 464 15 -
RSMGIGVHGLADVFAEMGYSYLD O36411 487 13 -
RSLGIGVINYAYYLAKNGVRYSD RIR1_HAEIN 511 14 -
RTLGIGVINFAYYLAKHGKRYSD RIR1_ECOLI 511 14 -
RTLGIGVINFAYWLAKNGKRYSD RIR1_SALTY 511 14 -
HAIGLGQMNLHGYLAREGIAYGS RIR3_SALTY 464 15 -
HAIGLGQMNLHGYLGREHIYYGS O69273 471 15 -
HAIGLGQMNLHGYLARERIFYGS RIR1_MYCTU 444 15 -
HALGLGAMNLHGFLATNQIYYNS RIR1_MYCPN 464 15 -
HALGLGAMNLHGFLATNAIYYDS RIR1_MYCGE 464 15 -
RNLGVGVTNYAAWLASNFASYED RIR1_BPT4 507 13 -
RKIGLGVMGLAELLAALGIPYDS O53767 442 14 -
RRLGLGIMGFADLLYKLEIPYNS O33839 387 14 -
ASMGLGVQGLADVFADLGWQYTD RIR1_EBV 487 9 -
RKIGLGVMGWADMLFLLNIPYDS O28609 334 14 -
RKIGLGVMGFADMLIKLEIPYNS P74911 500 14 -
RTIGVGAMGLADWLAKRRLNYDE RIR1_SYNY3 526 14 -
RTLGIGVINFAYYLAKHGKRYSD Q47412 509 14 -
RQLGIGYANLGALLMATGHAYDS O69981 436 14 -
RQLGIGYANLGALLMATGHAYDS O54196 436 14 -

Motif 5 width=24
Element Seqn Id St Int Rpt
LNKQIFETIYYGALEASCELAKEY RIR1_MOUSE 527 5 -
LNKQIFETIYYGALEASCDLAKEQ RIR1_HUMAN 527 5 -
LNKKIFETIYYGALEASCELAEKE RIR1_VACCC 526 5 -
LNKKIFETIYYGALEASCELAEKE RIR1_VACCV 526 5 -
LNKDIFETIYYHALKASSELAAKE Q9ZR56 546 5 -
LNKKIFETIYYGALEASCELAEKE RIR1_VARV 526 5 -
LNKDIFETIYYHALKASTELAARL O82573 546 5 -
LNKDIFETIYYHALKASSELAAKE Q9ZR57 546 5 -
LNKRIFETIYYAALEASCELAELN RIR1_CAEEL 533 5 -
LNTQIFETIYYAALESSCELAAEY RIR1_BRARE 527 5 -
LNRQIFETIYIAAVEASTELAEKD RIR1_TRYBB 536 5 -
LNKRIFETMYYAALEMSVELASIH RIR1_PLAF4 526 5 -
LNIQIFETIYHAALEASCEIAQVE RIR1_SCHPO 526 5 -
LNKQIFEVIYYAALDASCELAEKY RIR1_CRYPV 526 5 -
LNKKIFETIFYGALEANCELAAKD O41269 527 5 -
LNIQIFETIYHASMEASCELAQKD RIR1_YEAST 531 5 -
VNYSIAETIYFAALEASCELAKIN O12935 512 5 -
LNKRIYETMYYAALEMSVDWLQSG RIR1_PLAFG 526 5 -
LNKQIFETIYHATLEASCELAQKE RIR3_YEAST 531 5 -
LNREIFEHIYYAAVEASVELAEIH O41111 538 5 -
IDEAIHAALYYGAMRRSIELAKEK RIR1_ASFM2 522 5 -
LDRDIFETMYYTAVKTSSEICSIG Q9YTK6 498 5 -
FADRIFERINRAAIEASMTIAREK RIR1_TREPA 653 5 -
FADYSSELISYYAIQASCLLAKER O84834 775 5 -
LNKHIAEVMLLSAMKTSNALCVRG RIR1_HSV11 890 5 -
LNTHIAEVMLLAAMKTSNALCVRG P89462 895 5 -
MDEAIHAALYYGAMRRSIELAKEK RIR1_ASFB7 521 5 -
LNTHIAEVMLLAAMKTSNALCVRG RIR1_HSV23 897 5 -
LDRDIFETMYYTAVKTSSEICSVG RIR1_HSVSA 498 5 -
LDKNIFQSMYYTAVETSHNLVLEG P88952 525 5 -
LNKQIAERLLLNSMKASATLCKLG RIR1_HSVE4 542 5 -
LNKQIAERLLLNSMKASATLCKLG O39263 542 5 -
FSDECSEIIAYYAILASSLLAKER Q9Z6S5 767 5 -
LNKQIAERLLLNSMKASATLCRLG RIR1_HSVEB 543 5 -
KIDALMEQISYHAIDTSANLAKEK Q9ZLF9 574 5 -
KIDALMEQISYHAIDTSANLAKEK RIR1_HELPY 574 5 -
LDARIFEVMYYQAVRASNQLVTVG Q66663 530 5 -
LNVEIAERLLLAVMATSATLCEYG RIR1_HSVBC 540 5 -
LNAAIAEELLYGVMDASVELCERG RIR1_PRVKA 588 5 -
LNVQIAELMLYETMKTSMEMCKIG RIR1_VZVD 528 5 -
LDQKIAETLYFNALNTSINFVKIG O41962 509 5 -
FADKLFELIAFYALKGSLELAKER O66503 598 5 -
LNPQILESLLLGSIHASTSLCKLG O72889 538 5 -
FTNLYFYAITWHALRTSMLLARER RIR3_ECOLI 492 5 -
LDVEIFENMYFRAVKTSNNICRLG O36411 515 5 -
LTHRTFEAIQYYLLKASMNLAKEQ RIR1_HAEIN 539 5 -
LTHKTFEAIQYYLLKASNELAKEQ RIR1_ECOLI 539 5 -
LTHKTFEAIQYYLLKASNELAKEQ RIR1_SALTY 539 5 -
FTNLYFYTITWHAVHTSMRLARER RIR3_SALTY 492 5 -
FTNAYFAAVLYAALRASNKIAKER O69273 499 5 -
FTNIYFYTVLYHALRASNRIAIER RIR1_MYCTU 472 5 -
FTNIFFYTVAYHAFKASSELALEK RIR1_MYCPN 492 5 -
FTNIFFYTVAYHAFSASNKLALEL RIR1_MYCGE 492 5 -
LTHELFERLQYGLIKASIKLAKEK RIR1_BPT4 533 3 -
LATRLMRRIQQAAHTASRRLAEER O53767 470 5 -
FAANLMAFIALHAHRTSYELGKEK O33839 415 5 -
LNKEIFEHMYFTALCTSSLIGLHT RIR1_EBV 515 5 -
LAEKVMKFIQEESHRASQQLAEER O28609 362 5 -
IGEKVMSFINDESHKASQALAEER P74911 528 5 -
DINRLFEEIGYWCTQSSMELAKER RIR1_SYNY3 551 2 -
LTHKTFEAIQYYLLKASNELAKEQ Q47412 537 5 -
LAGAITSLMTGTSYRRSAELAAIV O69981 464 5 -
IAGAISSLMTGTSYRRSAELAAVV O54196 464 5 -

Motif 6 width=28
Element Seqn Id St Int Rpt
GIRNSLLIAPMPTASTAQILGNNESIEP RIR1_MOUSE 592 41 -
GIRNSLLIAPMPTASTAQILGNNESIEP RIR1_HUMAN 592 41 -
GLRNSLLVAPMPTASTAQILGNNESVEP RIR1_VACCC 591 41 -
GLRNSLLVAPMPTASTAQILGNNESVEP RIR1_VACCV 591 41 -
GVRNSLLVAPMPTASTSQILGNNECFEP Q9ZR56 611 41 -
GLRNSLLVAPMPTASTAQILGNNESVEP RIR1_VARV 591 41 -
GVRNSLLVAPMPTASTSQILGNNECFEP O82573 611 41 -
GVRNSLLVAPMPTASTSQILGNNECFEP Q9ZR57 611 41 -
GIRNSLLMAPMPTASTAQILGNNESIEP RIR1_CAEEL 598 41 -
GVRNSLLLAPMPTASTAQILGNNESIEP RIR1_BRARE 592 41 -
GMRNSLLIAPMPTASTSQILGNNECIEP RIR1_TRYBB 614 54 -
GLRNSLLLAPMPTASTSQILGNNESFEP RIR1_PLAF4 592 42 -
GIRNSLLVAPMPTASTSQILGFNECFEP RIR1_SCHPO 591 41 -
GIRNSLLISPMPTASTSQILGNNESLEP RIR1_CRYPV 592 42 -
GLRNSLLLAPMPTASTAQILGNNESFEP O41269 593 42 -
GVRNSLTMAPMPTASTSQILGYNECFEP RIR1_YEAST 596 41 -
GVRNSLLVAYMPTATTAQILGNNESFEP O12935 582 46 -
GLRNLLLLAPMPTASTSQILGNNESFEP RIR1_PLAFG 591 41 -
GLRNSLTMAPMPTASTSQILGYNECFEP RIR3_YEAST 596 41 -
GVRNSLLTALMPTASTAQICGSVEAFEP O41111 602 40 -
GVRNGYLTALMPTATSSNSTGKNECFEP RIR1_ASFM2 603 57 -
GVYNSQFIALMPTAGTSQLTGYTDSFYP Q9YTK6 567 45 -
GMRNGYLLAVAPTSSTSIIAGTTAGVDP RIR1_TREPA 714 37 -
GMRHCQLMAIAPTATISNIIGVTQSIEP O84834 852 53 -
GLRNSQFVALMPTAASAQISDVSEGFAP RIR1_HSV11 957 43 -
GLRNSQFIALMPTAASAQISDVSEGFAP P89462 962 43 -
GVRNGYLTALMPTATSSNSTGKNECFEP RIR1_ASFB7 602 57 -
GLRNSQFIALMPTAASAQISDVSEGFAP RIR1_HSV23 964 43 -
GVFNSQFIALMPTAGTSQLTGYTDSFYP RIR1_HSVSA 567 45 -
GIFNSQFLAVMPTAGTSQVTGYAESVYP P88952 595 46 -
GLYNSQFVAYMPTVSSSQVTESSEGFSP RIR1_HSVE4 609 43 -
GLYNSQFVAYMPTVSSSQVTESSEGFSP O39263 609 43 -
GMRNSQVMAIAPTATISNIIGVTQSIEP Q9Z6S5 844 53 -
GLYNSQFVAYMPTVSSSQVTESSEGFSP RIR1_HSVEB 610 43 -
GMRNGYLMAIAPTSSISILVGTTQTIEP Q9ZLF9 648 50 -
GMRNGYLMAIAPTSSISILVGTTQTIEP RIR1_HELPY 648 50 -
GTFNSQFIALMPTAGTSQLTGLSESFYP Q66663 601 47 -
GLYNAQFVALMPTVSSSQVTEGSEGFSP RIR1_HSVBC 607 43 -
GVYNAQFVALMPTVSSSQVTESSEGFSP RIR1_PRVKA 655 43 -
GLYNSQFLALMPTVSSAQVTECSEGFSP RIR1_VZVD 595 43 -
GVYNSQFVAYMPTAGTGQITGYSDSFYP O41962 579 46 -
GIRNAYLLALMPTGSTSLILGATPSIDP O66503 669 47 -
GLYNSQFVALMPTVSSSQVTESSEGFSP O72889 605 43 -
GIYNQNLQAVPPTGSISYINHATSSIHP RIR3_ECOLI 576 60 -
GVYNSQFIALMPTVGSSLLTGFSESYYP O36411 584 45 -
GLRNSTLTALMPSETSSQISNATNGIEP RIR1_HAEIN 610 47 -
GLRNSTLSALMPSETSSQISNATNGIEP RIR1_ECOLI 610 47 -
GLRNSTLSALMPSETSSQISNATNGIEP RIR1_SALTY 610 47 -
GIYNQNLQAVPPTGSISYINHATSSIHP RIR3_SALTY 576 60 -
GLYNRNLQAVPPTGSISYINNSTSSIHP O69273 583 60 -
GIYNQNLQAVPPTGSISYINHSTSSIHP RIR1_MYCTU 556 60 -
GLANSHLLAIAPTGSISYLSSCTPSLQP RIR1_MYCPN 578 62 -
GLANSHLMAIAPTGSISYLSSCTPSLQP RIR1_MYCGE 578 62 -
GIRNSTLSALMPCESSSQVSNSTNGYEP RIR1_BPT4 604 47 -
PRRNAQVTSVAPTGTISLIAGTTAGIEP O53767 509 15 -
FRRNVALLTIAPTGSISNIADTSSGLEP O33839 479 40 -
GLFNSQFIALMPTSGCAQVTGCSDAFYP RIR1_EBV 583 44 -
KMRNATTTTIAPTGTISIIAGCSSGIEP O28609 402 16 -
KMRNSTTTTIAPTGTISIIAGCSSSIEP P74911 568 16 -
GIRNSHITAIAPNTSSSLVQGCTASILP RIR1_SYNY3 620 45 -
VCVTPTLSALMPSETSSQISNATNGIER Q47412 608 47 -
GFRNSQASVIAPTGTIGLAMSCDTTGLE O69981 543 55 -
GFRNAQASVIAPTGTIGLAMSCDTTGLE O54196 543 55 -