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PR00975

Identifier
RIBOSOMALS19  [View Relations]  [View Alignment]  
Accession
PR00975
No. of Motifs
3
Creation Date
05-OCT-1998  (UPDATE 23-JUN-1999)
Title
Ribosomal protein S19 family signature
Database References

PROSITE; PS00323 RIBOSOMAL_S19
BLOCKS; BL00323
PFAM; PF00203 Ribosomal_S19
INTERPRO; IPR002222
PROTOMAP; 198
Literature References
1. KURLAND, C.G., JORGENSEN, F., RICHTER, A., EHRENBERG, M., BILGIN, N. 
AND ROJAS, A.-M.
IN THE RIBOSOME: STRUCTURE, FUNCTION AND EVOLUTION (ED. W.E.HILL ET AL.)
PP.513-526 (AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON DC).
 
2. MUELLER, F. AND BRIMACOMBE, R.
A new model for the three-dimensional folding of Escherichia coli
16S ribosomal RNA. II. The RNA-protein interaction data.
J.MOL.BIOL. 271(4) 545-565 (1997).
 
3. AGAFONOV, D.E., KOLB, V.A. AND SPIRIN, A.S.
Proteins on ribosome surface: measurements of protein exposure by
hot tritium bombardment technique.
PROC.NATL.ACAD.SCI.U.S.A. 94(24) 12892-7 (1997).
 
4. KITAGAWA, M., TAKASAWA, S., KIKUCHI, N., ITOH, T,. TERAOKA, H., 
YAMAMOTO, H. AND OKAMOTO, H.
Rig encodes ribosomal protein S15. The primary structure of mammalian 
ribosomal protein S15.
FEBS LETT. 283(2) 210 (1991).
 
5. OTAKA, E., SUZUKI, K. AND HASHIMOTO, T.
Examination of protein sequence homologies. VII. The complementary molecular
coevolution of ribosomal proteins equivalent to Escherichia coli L7/L12 and 
L10.
PROTEIN SEQ.DATA ANAL. 3 11-19 (1990).

Documentation
Ribosomes are ribonucleoprotein particles that are the site of protein
synthesis. The structure of the ribosome is well conserved across the
prokaryotic and eukaryotic lineages, reflecting the early origin of their
essential function. They comprise two subunits, which can dissociate on 
heating. In prokaryotes, the small subunit contains a single large RNA 
moeity denoted, according to its sedimentation coefficient, 16S rRNA, and 21 
different ribosomal proteins, designated S1-S21. Eukaryotic small ribosomal
subunits contain 33 proteins, many of which are similar to those found
in prokaryotes. 
 
There are two major tRNA binding sites on the ribosome, termed the A site, 
where incoming aminoacyl-tRNA is bound, and the P site (for peptidyl tRNA), 
where new peptide bonds are formed. The ribosomal proteins catalyse ribosome 
assembly and stabilise the rRNA, tuning the structure of the ribosome for 
optimal function [1]. Evidence suggests that, in prokaryotes, the peptidyl
transferase reaction is performed by the large subunit 23S rRNA, whereas
proteins probably have a greater role in eukaryotic ribosomes. Most of the
proteins lie close to, or on the surface of, the 30S subunit, arranged
peripherally around the rRNA [2]. The small subunit ribosomal proteins can
be categorised as primary binding proteins, which bind directly and
independently to 16S rRNA; secondary binding proteins, which display no
specific affinity for 16S rRNA, but its assembly is contingent upon the
presence of one or more primary binding proteins; and tertiary binding
proteins, which require the presence of one or more secondary binding
proteins and sometimes other tertiary binding proteins.
 
The small ribosomal subunit protein S19 contains 88-144 amino acid residues.
In Escherichia coli, S19 is known to form a complex with S13 that binds 
strongly to 16S ribosomal RNA. Experimental evidence [3] has revealed that 
S19 is moderately exposed on the ribosomal surface, and is designated 
a secondary rRNA binding protein. S19 belongs to a family of ribosomal 
proteins [3,4] that includes: eubacterial S19; algal and plant chloroplast 
S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and 
eukaryotic S15 (`rig' protein).
 
RIBOSOMALS19 is a 3-element fingerprint that provides a signature for S19 
ribosomal proteins. The fingerprint was derived from an initial alignment 
of 29 sequences: the motifs were drawn from short conserved regions spanning
the full alignment length - motifs 3 and 4 span the conserved C-terminal
region encoded by PROSITE pattern RIBOSOMAL_S19 (PS00323). Two iterations 
on OWL30.2 were required to reach convergence, at which point a true set
comprising 66 sequences was identified. A single partial match was also
found, RS19_YERPS, a fragment that lacks the portion of sequence bearing
motif 3.
 
An update on SPTR37_9f identified a true set of 62 sequences, and 1
partial match.
Summary Information
  62 codes involving  3 elements
1 codes involving 2 elements
Composite Feature Index
3626262
2110
123
True Positives
O21248        O28358        O52336        O59422        
O65059 O84529 P92813 Q23889
Q36570 Q36603 Q50265 RR19_ASTLO
RR19_CHLVU RR19_CYAPA RR19_EPIVI RR19_EUGGR
RR19_GUITH RR19_MAIZE RR19_MARPO RR19_ODOSI
RR19_ORYSA RR19_PEA RR19_PICAB RR19_PINTH
RR19_PORPU RR19_SECCE RR19_SOYBN RR19_SPIOL
RR19_TOBAC RS15_ARATH RS15_HUMAN RS15_ORYSA
RS15_PODAN RS15_XENLA RS15_XIPMA RS15_YEAST
RS19_AQUAE RS19_BACST RS19_BACSU RS19_BORBU
RS19_ECOLI RS19_HAEIN RS19_HALHA RS19_HALMA
RS19_HELPY RS19_METJA RS19_METTH RS19_MYCCA
RS19_MYCGE RS19_MYCLE RS19_MYCPN RS19_MYCTU
RS19_SYNP6 RS19_SYNY3 RS19_THEMA RS19_TREPA
RT19_ARATH RT19_MARPO RT19_PETHY RT19_PLASU
RT19_PROWI YN8L_YEAST
True Positive Partials
Codes involving 2 elements
O59084
Sequence Titles
O21248      RIBOSOMAL PROTEIN S19 - RECLINOMONAS AMERICANA. 
O28358 SSU RIBOSOMAL PROTEIN S19P (RPS19P) - ARCHAEOGLOBUS FULGIDUS.
O52336 RIBOSOMAL PROTEIN S19 - MYCOPLASMA GALLISEPTICUM.
O59422 132AA LONG HYPOTHETICAL 30S RIBOSOMAL PROTEIN S19 - PYROCOCCUS HORIKOSHII.
O65059 PROBABLE 40S RIBOSOMAL PROTEIN S15 - PICEA MARIANA (BLACK SPRUCE).
O84529 S19 RIBOSOMAL PROTEIN - CHLAMYDIA TRACHOMATIS.
P92813 RIBOSOMAL PROTEIN S19 - ORYZA SATIVA (RICE).
Q23889 RIBOSOMAL PROTEIN S19 - DICTYOSTELIUM DISCOIDEUM (SLIME MOLD).
Q36570 RPS19 PROTEIN - NICOTIANA BIGELOVII (BIGELOV'S TOBACCO).
Q36603 RPS19 PROTEIN - NICOTIANA TABACUM (COMMON TOBACCO).
Q50265 RPL23 - PHYTOPLASMA SP.
RR19_ASTLO CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ASTASIA LONGA (EUGLENOPHYCEAN ALGA).
RR19_CHLVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - CHLORELLA VULGARIS.
RR19_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S19 - CYANOPHORA PARADOXA.
RR19_EPIVI CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - EPIFAGUS VIRGINIANA (BEECHDROPS).
RR19_EUGGR CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - EUGLENA GRACILIS.
RR19_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - GUILLARDIA THETA (CRYPTOMONAS PHI).
RR19_MAIZE CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ZEA MAYS (MAIZE).
RR19_MARPO CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - MARCHANTIA POLYMORPHA (LIVERWORT).
RR19_ODOSI CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ODONTELLA SINENSIS.
RR19_ORYSA CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ORYZA SATIVA (RICE).
RR19_PEA CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PISUM SATIVUM (GARDEN PEA).
RR19_PICAB CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PICEA ABIES (NORWAY SPRUCE) (PICEA EXCELSA).
RR19_PINTH CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PINUS THUNBERGII (GREEN PINE) (JAPANESE BLACK PINE).
RR19_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PORPHYRA PURPUREA.
RR19_SECCE CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - SECALE CEREALE (RYE).
RR19_SOYBN CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - GLYCINE MAX (SOYBEAN).
RR19_SPIOL CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 (CS-S23) - SPINACIA OLERACEA (SPINACH).
RR19_TOBAC CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - NICOTIANA TABACUM (COMMON TOBACCO).
RS15_ARATH 40S RIBOSOMAL PROTEIN S15 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
RS15_HUMAN 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - HOMO SAPIENS (HUMAN), MUS MUSCULUS (MOUSE), RATTUS NORVEGICUS (RAT), MESOCRICETUS AURATUS (GOLDEN HAMSTER), AND GALLUS GALLUS (CHICKEN).
RS15_ORYSA 40S RIBOSOMAL PROTEIN S15 - ORYZA SATIVA (RICE).
RS15_PODAN 40S RIBOSOMAL PROTEIN S15 (S12) - PODOSPORA ANSERINA.
RS15_XENLA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
RS15_XIPMA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - XIPHOPHORUS MACULATUS (SOUTHERN PLATYFISH).
RS15_YEAST 40S RIBOSOMAL PROTEIN S15 (S21) (YS21) (RP52) (RIG PROTEIN) - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
RS19_AQUAE 30S RIBOSOMAL PROTEIN S19 - AQUIFEX AEOLICUS.
RS19_BACST 30S RIBOSOMAL PROTEIN S19 (BS19) - BACILLUS STEAROTHERMOPHILUS.
RS19_BACSU 30S RIBOSOMAL PROTEIN S19 (BS19) - BACILLUS SUBTILIS.
RS19_BORBU 30S RIBOSOMAL PROTEIN S19 - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
RS19_ECOLI 30S RIBOSOMAL PROTEIN S19 - ESCHERICHIA COLI.
RS19_HAEIN 30S RIBOSOMAL PROTEIN S19 - HAEMOPHILUS INFLUENZAE, AND ACTINOBACILLUS ACTINOMYCETEMCOMITANS (HAEMOPHILUS ACTINOMYCETEMCOMITANS).
RS19_HALHA 30S RIBOSOMAL PROTEIN S19 (HHAS19) - HALOBACTERIUM HALOBIUM.
RS19_HALMA 30S RIBOSOMAL PROTEIN S19 (HMAS19) (HS18) - HALOARCULA MARISMORTUI (HALOBACTERIUM MARISMORTUI).
RS19_HELPY 30S RIBOSOMAL PROTEIN S19 - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
RS19_METJA 30S RIBOSOMAL PROTEIN S19P - METHANOCOCCUS JANNASCHII.
RS19_METTH 30S RIBOSOMAL PROTEIN S19P - METHANOBACTERIUM THERMOAUTOTROPHICUM.
RS19_MYCCA 30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA CAPRICOLUM.
RS19_MYCGE 30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA GENITALIUM.
RS19_MYCLE 30S RIBOSOMAL PROTEIN S19 - MYCOBACTERIUM LEPRAE.
RS19_MYCPN 30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA PNEUMONIAE.
RS19_MYCTU 30S RIBOSOMAL PROTEIN S19 - MYCOBACTERIUM TUBERCULOSIS, AND MYCOBACTERIUM BOVIS.
RS19_SYNP6 30S RIBOSOMAL PROTEIN S19 - SYNECHOCOCCUS SP. (STRAIN PCC 6301).
RS19_SYNY3 30S RIBOSOMAL PROTEIN S19 - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
RS19_THEMA 30S RIBOSOMAL PROTEIN S19 - THERMOTOGA MARITIMA.
RS19_TREPA 30S RIBOSOMAL PROTEIN S19 - TREPONEMA PALLIDUM.
RT19_ARATH 40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL PRECURSOR - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
RT19_MARPO MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - MARCHANTIA POLYMORPHA (LIVERWORT).
RT19_PETHY MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PETUNIA HYBRIDA (PETUNIA).
RT19_PLASU MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PLATYMONAS SUBCORDIFORMIS.
RT19_PROWI MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PROTOTHECA WICKERHAMII.
YN8L_YEAST PUTATIVE 40S RIBOSOMAL PROTEIN YNR037C - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).

O59084 639AA LONG HYPOTHETICAL PROTEIN - PYROCOCCUS HORIKOSHII.
Scan History
OWL30_2    2  300  NSINGLE    
SPTR37_9f 1 300 NSINGLE
Initial Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
IWSRRSSILPEFVDCFVRIY RT19_PETHY 31 31 -
THLRDMIVVPEMIGSVVGIY RS15_PODAN 85 85 -
TKSRSSTVFPSMVGHNISVY RR19_ASTLO 33 33 -
THLRDMPVLPEFVGLTFAVY RS19_HALHA 48 48 -
TYSRATTIIPEFVGHTIAVH AE0006697 125 125 -
THCRDMVVLPEMVGKVVFVH H69489 66 66 -
TWSRRSVILPQFIGLSFNIY S78142 33 33 -
IYSRRSVVSPKFIGREVEIY RT19_PLASU 28 28 -
THLRDMPVVPEMVGLTLAVH RS19_HALMA 73 73 -
TWSRASTILPMMVGHTIAVH RR19_CYAPA 33 33 -
TWSRRSTIFPEFIGKTFGVY RS19_MYCCA 30 30 -
TWSRKSTIIPIMIGHTIAIH RR19_PEA 32 32 -
TWSRASTIVPTMIGHTIAVH RR19_MARPO 32 32 -
TWSRRSTIFPNMIGLTIAVH RS19_ECOLI 32 32 -
TWSRRSTIFPQFVGHTIAVY RS19_BACST 32 32 -
TWSRASSILPAMVGHTIAIH RR19_MAIZE 31 31 -
TWSRASTIIPIMIGHMISIH RR19_EPIVI 35 35 -
TWSRASMIIPKWVGHGIAVY RS19_THEMA 33 33 -
TWSRSCTIIPIMIGNTIGVY RR19_EUGGR 33 33 -
THLRDMIILPEMVGSMVGVY RS15_HUMAN 77 77 -
TNARAATILPQFVGLKFQIH YN8L_YEAST 35 35 -
THLRDMVILPEMVGSMVGVY RS15_XIPMA 78 78 -
IWSRRSCILPQFVGCYAQIY RT19_MARPO 25 25 -
IWSRRSAILPQFVGKTVSIH RT19_PROWI 24 24 -
THLRNMIIVPEMIGSIIGVY RS15_ARATH 85 85 -
THMRNMIIVPEMIGSVVGIY RS15_YEAST 78 78 -
THLRNMIIVPEMIGSIVGVY RS15_ORYSA 85 85 -
IWSRRSTILPEYVDSAVRIY RT19_ARATH 158 158 -

Motif 2 width=13
Element Seqn Id St Int Rpt
NGKTHVRCKITEG RT19_ARATH 178 0 -
NGNKWVSVTVTED S78142 53 0 -
NGKEFVRVEIKPE H69489 86 0 -
NGKTFVPVYITQD AE0006697 145 0 -
NGRQHLPVFITDQ RR19_CYAPA 53 0 -
NGKEFIPVYITED RS19_MYCCA 50 0 -
NGKEHLPVYITDR RR19_PEA 52 0 -
NGQEHLPIYITDR RR19_MARPO 52 0 -
NGRQHVPVFVTDE RS19_ECOLI 52 0 -
DGRRHVPVYITED RS19_BACST 52 0 -
NGKEHIPIYITNP RR19_MAIZE 51 0 -
NGKEHLPIYITDH RR19_EPIVI 55 0 -
NGMKHIPVYITEN RS19_THEMA 53 0 -
NGKEHIPVLVSDQ RR19_EUGGR 53 0 -
NGKTFNQVEIKPE RS15_HUMAN 97 0 -
NGKEYVPIEISED YN8L_YEAST 55 0 -
NGKTFNQVEIKPE RS15_XIPMA 98 0 -
NGKGFVGLKITEE RT19_MARPO 45 0 -
NGRIFIPCKISPE RT19_PROWI 44 0 -
NGKTFNQVEIKPE RS15_ARATH 105 0 -
NGKAFNQVEIRPE RS15_YEAST 98 0 -
NGKTFNQVEIKPE RS15_ORYSA 105 0 -
NGKTFVRCKITEG RT19_PETHY 51 0 -
SGKEFNQVEIKPE RS15_PODAN 105 0 -
NGKNYVPFLILNQ RR19_ASTLO 53 0 -
TGQEFERVEVQPE RS19_HALHA 68 0 -
DGQNFERVKVEPE RS19_HALMA 93 0 -
NGHKWITIKIKED RT19_PLASU 48 0 -

Motif 3 width=16
Element Seqn Id St Int Rpt
EMIGHYLGEFQLTRSS RS19_HALHA 80 -1 -
EMLGHYLGEFQLTRSS RS19_HALMA 105 -1 -
DMIGHKFGEFAFTRKA RT19_PLASU 60 -1 -
QMVGHKLGEFAPTRTF RR19_CYAPA 65 -1 -
DMVGHKLGEFAPTRTF AE0006697 157 -1 -
EMIGHRLGEFALTRRF H69489 98 -1 -
DMVGNKLGEFAPTRKF RS19_MYCCA 62 -1 -
RMVGHKLGEFSPTLNF RR19_PEA 64 -1 -
RMVGHKLGEFAPTRTF RR19_MARPO 64 -1 -
EMVGHKLGEFAPTRTY RS19_ECOLI 64 -1 -
DMVGHKLGEFAPTATF RS19_BACST 64 -1 -
PMVGRKLGEFVPTRHF RR19_MAIZE 63 -1 -
HMVGHKLGEFVPTLNF RR19_EPIVI 67 -1 -
NMIGHRLGEFAPTRRF RS19_THEMA 65 -1 -
QMIGHKLGEFVQTRNY RR19_EUGGR 65 -1 -
EMIGHYLGEFSITYKP RS15_HUMAN 109 -1 -
DMVGHKLGEFAPTRKR YN8L_YEAST 67 -1 -
EMCGHYLGEFSITYKP RS15_XIPMA 110 -1 -
EMVGHKFGEFASTRKT RT19_MARPO 57 -1 -
EMIGHKFGEFAVTRKK RT19_PROWI 56 -1 -
EMIGHYLAEFSISYKP RS15_ARATH 117 -1 -
EMLGHYLGEFSITYTP RS15_YEAST 110 -1 -
EMIGHYLAEFSISYKP RS15_ORYSA 117 -1 -
GKVGHKFGEFAFTRKV RT19_ARATH 190 -1 -
DMIGHKLGEFSLTRKA S78142 65 -1 -
GKVGHKFGEFAFTRKR RT19_PETHY 63 -1 -
EMVGHYLGEFSISYKP RS15_PODAN 117 -1 -
QMISSKLGEFSRTRNF RR19_ASTLO 65 -1 -
Final Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
TWSRASTILPQMIGHTIAVH RS19_SYNP6 33 33 -
TWSRSSTILPNMVGATIAVY RR19_GUITH 33 33 -
TWSRSSTIVPLMIGHTIAVH RR19_CHLVU 33 33 -
TWSRASTILPMMVGHTIAVH RR19_CYAPA 33 33 -
TYSRATTIIPEFVGHTIAVH RS19_AQUAE 125 125 -
TWSRRSTIFPEFIGKTFGVY RS19_MYCCA 30 30 -
TWSRKSTIIPIMIGHTIAIH RR19_PEA 32 32 -
TWSRASTIIPTMIGHTIAIH RR19_TOBAC 32 32 -
TWSRASTIVPTMIGHTIAVH RR19_MARPO 32 32 -
TWSRASTIIPTMIGHTIAIH RR19_SOYBN 32 32 -
TWSRRSTIFPNMIGLTIAVH RS19_ECOLI 32 32 -
TWSRASTILPQMVGHTIAVH RS19_SYNY3 33 33 -
TWSRSSTITPIFVGHKIAVY Q50265 33 33 -
TWSRASTIIPTMIGHTIAIH RR19_SPIOL 32 32 -
TWSRRSTIFPQFVGHTIAVY RS19_BACST 32 32 -
TWSRRSTIFPEFVGNTFAVH RS19_MYCPN 33 33 -
TWSRASTIIPTXIGHTIAIH Q36570 33 33 -
TWSRASTIIPDMIGHTIAVY RR19_PORPU 33 33 -
TWSRRSTIFPDFVGHTFAVH O52336 33 33 -
TWSRRSMIIPSMIGLTIAVH RS19_HAEIN 32 32 -
TWSRASSILPTMVGHTIAIH RR19_SECCE 31 31 -
TWSRRSTIFPEFVGNTFSVH RS19_MYCGE 33 33 -
TWSRASSILPAMVGHTIAIH RR19_ORYSA 31 31 -
TWSRASSILPAMVGHTIAIH RR19_MAIZE 31 31 -
THCRDMIILPEMVGLTIYVH O59422 65 65 -
TWSRASTIIPIMIGHMISIH RR19_EPIVI 35 35 -
TWSRRSTIFPQFIGHTIAVY RS19_BACSU 32 32 -
TWSRRSTIIPDFIGHTFAVH RS19_MYCTU 33 33 -
TWSRRSTIIPDFIGHTFAVH RS19_MYCLE 33 33 -
TWSRRSTILPEMIGFTYNVH RS19_HELPY 33 33 -
TYSRSSTIIPEMVSLTISVY RS19_BORBU 33 33 -
TWSRTSTILPTMVGHTIAVY RR19_ODOSI 33 33 -
TWSRASMIIPKWVGHGIAVY RS19_THEMA 33 33 -
TWSRASTIIPTMIGHTIAIH Q36603 33 33 -
TWSRASVIVPAMIGHTIAVH RR19_PICAB 33 33 -
TWSRASVIVPAMIGHTIAVH RR19_PINTH 33 33 -
TWSRSCTIIPIMIGNTIGVY RR19_EUGGR 33 33 -
THLRDMIILPEMVGSMVGVY RS15_HUMAN 77 77 -
THCRDFVITPDMVGLTFGVY RS19_METJA 85 85 -
TNARAATILPQFVGLKFQIH YN8L_YEAST 35 35 -
THLRDMIILPEMVGSMVGVY RS15_XENLA 77 77 -
THLRDMVILPEMVGSMVGVY RS15_XIPMA 78 78 -
THCRDMVVLPEMVGKVVFVH O28358 66 66 -
IWSRRSCILPQFVGCYAQIY RT19_MARPO 25 25 -
SYSRCSTIIPEMVGFTISVH RS19_TREPA 36 36 -
IWSRRSAILPQFVGKTVSIH RT19_PROWI 24 24 -
THLRNMIIVPEMIGSIIGVY RS15_ARATH 85 85 -
THLRNMIIVPEMIGSIIGVY O65059 84 84 -
TWSRRSVILPQFIGLSFNIY O21248 33 33 -
THCRDMIVLPEMVGMTFGIH RS19_METTH 69 69 -
THMRNMIIVPEMIGSVVGIY RS15_YEAST 78 78 -
TWSRRSMITPEMIGHTFEVH O84529 33 33 -
THLRNMIIVPEMIGSIVGVY RS15_ORYSA 85 85 -
IWSRRSTILPEYVDSAVRIY RT19_ARATH 158 158 -
IWSRRSSILPEFVDCFVRIY RT19_PETHY 31 31 -
THLRDMIVVPEMIGSVVGIY RS15_PODAN 85 85 -
TKSRSSTVFPSMVGHNISVY RR19_ASTLO 33 33 -
IWSRRSSISPEFVDCSVLIY P92813 31 31 -
THLRDMPVLPEFVGLTFAVY RS19_HALHA 48 48 -
THLRDMPVVPEMVGLTLAVH RS19_HALMA 73 73 -
IYSRRSVVSPKFIGREVEIY RT19_PLASU 28 28 -
TTERSSVIVPYYLTKTIYVY Q23889 28 28 -

Motif 2 width=13
Element Seqn Id St Int Rpt
NGRQHVPVYVTEQ RS19_SYNP6 53 0 -
NGKQHVPVYISDQ RR19_GUITH 53 0 -
NGREHIPVFITDQ RR19_CHLVU 53 0 -
NGRQHLPVFITDQ RR19_CYAPA 53 0 -
NGKTFVPVYITQD RS19_AQUAE 145 0 -
NGKEFIPVYITED RS19_MYCCA 50 0 -
NGKEHLPVYITDR RR19_PEA 52 0 -
NGKEHLPIYITDS RR19_TOBAC 52 0 -
NGQEHLPIYITDR RR19_MARPO 52 0 -
NGKEHLPIYITDR RR19_SOYBN 52 0 -
NGRQHVPVFVTDE RS19_ECOLI 52 0 -
NGRQHVPVFVSEQ RS19_SYNY3 53 0 -
NGREHIPVYITEN Q50265 53 0 -
NGREHLPIYITDR RR19_SPIOL 52 0 -
DGRRHVPVYITED RS19_BACST 52 0 -
NGKTFINVYVTDD RS19_MYCPN 53 0 -
NGKEHLPIYITXS Q36570 53 0 -
NGKQHFPVFVSDQ RR19_PORPU 53 0 -
NGKKFINVYVTED O52336 53 0 -
NGRQHVPVYVSDE RS19_HAEIN 52 0 -
NGKEHIPIYITNP RR19_SECCE 51 0 -
NGKTFINVYVTDD RS19_MYCGE 53 0 -
NGKEHIPIYITNP RR19_ORYSA 51 0 -
NGKEHIPIYITNP RR19_MAIZE 51 0 -
NGKEFVPVEIKPE O59422 85 0 -
NGKEHLPIYITDH RR19_EPIVI 55 0 -
DGRKHVPVFISED RS19_BACSU 52 0 -
DGRKHVPVFVTES RS19_MYCTU 53 0 -
DGRKHVPVFVTEA RS19_MYCLE 53 0 -
NGRVFIPVYITEN RS19_HELPY 53 0 -
NGKTFIPIYITED RS19_BORBU 53 0 -
NGRQHVPIFISDQ RR19_ODOSI 53 0 -
NGMKHIPVYITEN RS19_THEMA 53 0 -
XGKEHLPIYITDS Q36603 53 0 -
NGREHLPIYVTDR RR19_PICAB 53 0 -
NGREHLPIYVTDR RR19_PINTH 53 0 -
NGKEHIPVLVSDQ RR19_EUGGR 53 0 -
NGKTFNQVEIKPE RS15_HUMAN 97 0 -
NGKEFVEVKVTPE RS19_METJA 105 0 -
NGKEYVPIEISED YN8L_YEAST 55 0 -
NGKAFNQVEIKPE RS15_XENLA 97 0 -
NGKTFNQVEIKPE RS15_XIPMA 98 0 -
NGKEFVRVEIKPE O28358 86 0 -
NGKGFVGLKITEE RT19_MARPO 45 0 -
NGKSWIPVYITEE RS19_TREPA 56 0 -
NGRIFIPCKISPE RT19_PROWI 44 0 -
NGKTFNQVEIKPE RS15_ARATH 105 0 -
NGKTFNQVEIKPE O65059 104 0 -
NGNKWVSVTVTED O21248 53 0 -
NGKEFVEVKIQPE RS19_METTH 89 0 -
NGKAFNQVEIRPE RS15_YEAST 98 0 -
NGRKFLTVFVSET O84529 53 0 -
NGKTFNQVEIKPE RS15_ORYSA 105 0 -
NGKTHVRCKITEG RT19_ARATH 178 0 -
NGKTFVRCKITEG RT19_PETHY 51 0 -
SGKEFNQVEIKPE RS15_PODAN 105 0 -
NGKNYVPFLILNQ RR19_ASTLO 53 0 -
NGKTPVRCKITEG P92813 51 0 -
TGQEFERVEVQPE RS19_HALHA 68 0 -
DGQNFERVKVEPE RS19_HALMA 93 0 -
NGHKWITIKIKED RT19_PLASU 48 0 -
NGRKYVGVKITEK Q23889 48 0 -

Motif 3 width=16
Element Seqn Id St Int Rpt
QMVGHKLGEFAPTRTF RS19_SYNP6 65 -1 -
QMVGHKLGEFSPTRTF RR19_GUITH 65 -1 -
QMVGHKLGEFAPTRTF RR19_CHLVU 65 -1 -
QMVGHKLGEFAPTRTF RR19_CYAPA 65 -1 -
DMVGHKLGEFAPTRTF RS19_AQUAE 157 -1 -
DMVGNKLGEFAPTRKF RS19_MYCCA 62 -1 -
RMVGHKLGEFSPTLNF RR19_PEA 64 -1 -
SMVGHKLGEFAPTLNF RR19_TOBAC 64 -1 -
RMVGHKLGEFAPTRTF RR19_MARPO 64 -1 -
RMVGHKLGEFSPTLNF RR19_SOYBN 64 -1 -
EMVGHKLGEFAPTRTY RS19_ECOLI 64 -1 -
QMVGHKLGEFAPTRTF RS19_SYNY3 65 -1 -
NMVGHKLGEFSPTRTY Q50265 65 -1 -
RMVGHKLGEFAPTLNF RR19_SPIOL 64 -1 -
DMVGHKLGEFAPTATF RS19_BACST 64 -1 -
DMVGHKLGEFSPTRNF RS19_MYCPN 65 -1 -
SMVGHKLGEFAPTLNF Q36570 65 -1 -
QMVGHKLGEFVPTRTF RR19_PORPU 65 -1 -
DMIGHKLGEFSPTRTF O52336 65 -1 -
EMIGHKLGEFAPTRTY RS19_HAEIN 64 -1 -
PMVGRKLGEFVPTRHF RR19_SECCE 63 -1 -
DMVGHKLGEFSPTRNF RS19_MYCGE 65 -1 -
PMVGRKLGEFVPTRHF RR19_ORYSA 63 -1 -
PMVGRKLGEFVPTRHF RR19_MAIZE 63 -1 -
EMIGHYLGEFAPTRKR O59422 97 -1 -
HMVGHKLGEFVPTLNF RR19_EPIVI 67 -1 -
DMVGHKLGEFAPTRTY RS19_BACSU 64 -1 -
SMVGHKLGEFAPTRTF RS19_MYCTU 65 -1 -
AMVGHKLGEFAPTRTF RS19_MYCLE 65 -1 -
NHVGYKLGEFAPTRTF RS19_HELPY 65 -1 -
DLVGHKLGEFSPTRIF RS19_BORBU 65 -1 -
QLVGHKLGEFVSTRTF RR19_ODOSI 65 -1 -
NMIGHRLGEFAPTRRF RS19_THEMA 65 -1 -
SMVGHKLGXFAPTLNF Q36603 65 -1 -
RMVDHKLGEFAPTLLF RR19_PICAB 65 -1 -
RMVDHKLGEFAPTLLF RR19_PINTH 65 -1 -
QMIGHKLGEFVQTRNY RR19_EUGGR 65 -1 -
EMIGHYLGEFSITYKP RS15_HUMAN 109 -1 -
EMIGHYLGEFSLTRKP RS19_METJA 117 -1 -
DMVGHKLGEFAPTRKR YN8L_YEAST 67 -1 -
EMIGHYLGEFSITYKP RS15_XENLA 109 -1 -
EMCGHYLGEFSITYKP RS15_XIPMA 110 -1 -
EMIGHRLGEFALTRRF O28358 98 -1 -
EMVGHKFGEFASTRKT RT19_MARPO 57 -1 -
EFVGHKLGEFSPTRVF RS19_TREPA 68 -1 -
EMIGHKFGEFAVTRKK RT19_PROWI 56 -1 -
EMIGHYLAEFSISYKP RS15_ARATH 117 -1 -
EMIGHYLAEFSISYKP O65059 116 -1 -
DMIGHKLGEFSLTRKA O21248 65 -1 -
EMIGCYFGEFAPTRKK RS19_METTH 101 -1 -
EMLGHYLGEFSITYTP RS15_YEAST 110 -1 -
TMVGHKLGEFSPTRMF O84529 65 -1 -
EMIGHYLAEFSISYKP RS15_ORYSA 117 -1 -
GKVGHKFGEFAFTRKV RT19_ARATH 190 -1 -
GKVGHKFGEFAFTRKR RT19_PETHY 63 -1 -
EMVGHYLGEFSISYKP RS15_PODAN 117 -1 -
QMISSKLGEFSRTRNF RR19_ASTLO 65 -1 -
GKVGHKFGEFAFTRRR P92813 63 -1 -
EMIGHYLGEFQLTRSS RS19_HALHA 80 -1 -
EMLGHYLGEFQLTRSS RS19_HALMA 105 -1 -
DMIGHKFGEFAFTRKA RT19_PLASU 60 -1 -
KSLGRKLGEYVLTKKV Q23889 60 -1 -