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PR00969

Identifier
CHAPERONPILI  [View Relations]  [View Alignment]  
Accession
PR00969
No. of Motifs
5
Creation Date
21-JUL-1998  (UPDATE 28-JUL-1999)
Title
Pili chaperone signature
Database References

PROSITE; PS00635 PILI_CHAPERONE
BLOCKS; BL00635
PFAM; PF00345 pili_assembly
INTERPRO; IPR001829
PDB; 3DPA
SCOP; 3DPA
CATH; 3DPA
Literature References
1. HUNG, D.L., KNIGHT, S.D., WOODS, R.M., PINKNER, J.S., AND HULTGREN, S.J.
Molecular basis of two subfamilies of immunoglobulin-like chaperones.
EMBO J. 15(15) 3792-3805 (1996).
 
2. HULTGREN, S.J., NORMARK, S. AND ABRAHAM, S.N.
Chaperone-assisted assembly and molecular architecture of adhesive pili.
ANNU.REV.MICROBIOL. 45 383-415 (1991).
 
3. HOLMGREN, A., KUEHN, M.J., BRANDEN, C.I., AND HULTGREN, S.J.
Conserved immunoglobulin-like features in a family of periplasmic pilus
chaperones in bacteria.
EMBO J. 11(4) 1617-1622 (1992).

Documentation
Pili are supramolecular structures present on the surface of most Gram-
negative bacteria that are involved in the recognition of host receptors.
Many interactive subunits are required to assemble pili, but their assembly
only takes place after translocation across the cytoplasmic membrane. 
 
Periplasmic chaperones assist pili assembly by binding to the subunits, 
thereby preventing premature aggregation [1,2]. This family of chaperones
are structurally, and possibly evolutionarily, related to the immunoglobulin
superfamily [3]: they contain two globular domains, with a topology 
identical to an immunoglobulin fold. 
 
CHAPERONPILI is a 5-element fingerprint that provides a signature for the
pili chaperone protein family. The fingerprint was derived from an initial
alignment of 13 sequences: the motifs were drawn from conserved regions 
spanning the full alignment length - motif 3 includes the region encoded by
PROSITE pattern PILI_CHAPERONE (PS00635), a highly-conserved section located
in the C-terminus of the first globular domain. Four iterations on OWL30.2 
were required to reach convergence, at which point a true set comprising 47
sequences was identified. Two partial matches were also found, ECU505471 
and YHCA_ECOLI, both of which are related proteins that fail to match two 
or more motifs.
 
An update on SPTR37_9f identified a true set of 45 sequences, and 1
partial match.
Summary Information
  45 codes involving  5 elements
0 codes involving 4 elements
1 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
54545454545
400000
301110
200000
12345
True Positives
AFAB_ECOLI    AGGD_ECOLI    CAFM_YERPE    CLPE_ECOLI    
CS31_ECOLI CSC1_ECOLI CSC2_ECOLI ECPD_ECOLI
FAEE_ECOLI FANE_ECOLI FIMB_BORPE FIMC_ECOLI
FIMC_SALTY FOCC_ECOLI HFB1_HAEIN HFB2_HAEIN
LPFB_SALTY MRKB_KLEPN MYFB_YEREN NFAE_ECOLI
O30925 O52999 O68439 O68774
O85184 O87659 P72210 P94812
P96324 PAPD_ECOLI PMFD_PROMI PSAB_YERPE
Q04821 Q47197 Q51905 Q56085
SEFB_SALEN SFMC_ECOLI YBGP_ECOLI YCBF_ECOLI
YCBR_ECOLI YEHC_ECOLI YFCS_ECOLI YQIH_ECOLI
YRAI_ECOLI
True Positive Partials
Codes involving 3 elements
Q46992
Sequence Titles
AFAB_ECOLI  CHAPERONE PROTEIN AFAB PRECURSOR - ESCHERICHIA COLI. 
AGGD_ECOLI CHAPERONE PROTEIN AGGD PRECURSOR - ESCHERICHIA COLI.
CAFM_YERPE CHAPERONE PROTEIN CAF1M PRECURSOR (CAPSULE PROTEIN FRACTION 1) - YERSINIA PESTIS.
CLPE_ECOLI CHAPERONE PROTEIN CLPE PRECURSOR - ESCHERICHIA COLI.
CS31_ECOLI CHAPERONE PROTEIN CS3-1 PRECURSOR - ESCHERICHIA COLI.
CSC1_ECOLI CHAPERONE PROTEIN CSSC PRECURSOR - ESCHERICHIA COLI.
CSC2_ECOLI CHAPERONE PROTEIN CSSC PRECURSOR - ESCHERICHIA COLI.
ECPD_ECOLI CHAPERONE PROTEIN ECPD PRECURSOR - ESCHERICHIA COLI.
FAEE_ECOLI CHAPERONE PROTEIN FAEE PRECURSOR - ESCHERICHIA COLI.
FANE_ECOLI CHAPERONE PROTEIN FANE PRECURSOR - ESCHERICHIA COLI.
FIMB_BORPE CHAPERONE PROTEIN FIMB/FHAD PRECURSOR - BORDETELLA PERTUSSIS.
FIMC_ECOLI CHAPERONE PROTEIN FIMC PRECURSOR - ESCHERICHIA COLI.
FIMC_SALTY CHAPERONE PROTEIN FIMC PRECURSOR - SALMONELLA TYPHIMURIUM.
FOCC_ECOLI CHAPERONE PROTEIN FOCC PRECURSOR - ESCHERICHIA COLI.
HFB1_HAEIN CHAPERONE PROTEIN HIFB PRECURSOR - HAEMOPHILUS INFLUENZAE.
HFB2_HAEIN CHAPERONE PROTEIN HIFB PRECURSOR - HAEMOPHILUS INFLUENZAE.
LPFB_SALTY CHAPERONE PROTEIN LPFB PRECURSOR - SALMONELLA TYPHIMURIUM.
MRKB_KLEPN CHAPERONE PROTEIN MRKB PRECURSOR - KLEBSIELLA PNEUMONIAE.
MYFB_YEREN CHAPERONE PROTEIN MYFB PRECURSOR - YERSINIA ENTEROCOLITICA.
NFAE_ECOLI CHAPERONE PROTEIN NFAE PRECURSOR - ESCHERICHIA COLI.
O30925 F17A-D - ESCHERICHIA COLI.
O52999 CSHC CHAPERONE - ESCHERICHIA COLI.
O68439 CHAPERONE PRECURSOR - PHOTOBACTERIUM LEIOGNATHI.
O68774 CAF1M - YERSINIA PESTIS.
O85184 CHAPERONIN PRECURSOR - ESCHERICHIA COLI.
O87659 PERIPLASMIC FIMBRIAL CHAPERONE STFD - SALMONELLA TYPHIMURIUM.
P72210 TYPE 1 FIMBRIAL CHAPERONE - PROTEUS MIRABILIS.
P94812 PERIPLASMIC CHAPERONE - HAEMOPHILUS INFLUENZAE.
P96324 PUTATIVE FIMBRIAL CHAPERONE - ESCHERICHIA COLI.
PAPD_ECOLI CHAPERONE PROTEIN PAPD PRECURSOR - ESCHERICHIA COLI.
PMFD_PROMI CHAPERONE PROTEIN PMFD PRECURSOR - PROTEUS MIRABILIS.
PSAB_YERPE CHAPERONE PROTEIN PSAB PRECURSOR - YERSINIA PESTIS, AND YERSINIA PSEUDOTUBERCULOSIS.
Q04821 PEFD PROTEIN PRECURSOR - SALMONELLA TYPHIMURIUM.
Q47197 CHAPERONE - ESCHERICHIA COLI.
Q51905 (HI4320) - PROTEUS MIRABILIS.
Q56085 FINC GENE - SALMONELLA TYPHI.
SEFB_SALEN CHAPERONE PROTEIN SEFB PRECURSOR - SALMONELLA ENTERITIDIS.
SFMC_ECOLI CHAPERONE PROTEIN SFMC PRECURSOR - ESCHERICHIA COLI.
YBGP_ECOLI HYPOTHETICAL FIMBRIAL CHAPERONE IN NEI-GLTA INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.
YCBF_ECOLI HYPOTHETICAL FIMBRIAL CHAPERONE IN PEPN-PYRD INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.
YCBR_ECOLI HYPOTHETICAL 25.4 KD FIMBRIAL CHAPERONE IN PEPN-PYRD INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.
YEHC_ECOLI HYPOTHETICAL 26.6 KD FIMBRIAL CHAPERONE IN GATY-MRP INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.
YFCS_ECOLI HYPOTHETICAL FIMBRIAL CHAPERONE IN AROC-FADL INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.
YQIH_ECOLI HYPOTHETICAL FIMBRIAL CHAPERONE IN RIBB-GLGS INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.
YRAI_ECOLI HYPOTHETICAL 25.7 KD FIMBRIAL CHAPERONE IN AGAI-MTR INTERGENIC REGION PRECURSOR - ESCHERICHIA COLI.

Q46992 FASB - ESCHERICHIA COLI.
Scan History
OWL30_2    4  300  NSINGLE    
SPTR37_9f 3 200 NSINGLE
Initial Motifs
Motif 1  width=10
Element Seqn Id St Int Rpt
IALGATRVIY FIMC_SALTY 27 27 -
VIITGTRVIY HFB1_HAEIN 30 30 -
LHLGATRMIY AGGD_ECOLI 37 37 -
LHLGATRVVY AFAB_ECOLI 50 50 -
VKIGTTRVIY PSAB_YERPE 45 45 -
VSLDRTRIVL PMFD_PROMI 28 28 -
IIVNGTRFIY MRKB_KLEPN 21 21 -
VTIGESRIIY CAFM_YERPE 37 37 -
VSLDRTRAVF PAPD_ECOLI 23 23 -
FTLNSTRYIY FANE_ECOLI 21 21 -
VRTGETRIIY MYFB_YEREN 44 44 -
FEINKTRVIY CSC2_ECOLI 23 23 -
LRLGTTRVIY SEFB_SALEN 42 42 -

Motif 2 width=22
Element Seqn Id St Int Rpt
TFIVTPPLFVSEPKSENTLRII FIMC_SALTY 72 35 -
PFVITPPVARVEAKSGQSLRIT HFB1_HAEIN 79 39 -
PFIITPPLFRLDALQSSRLRIV AGGD_ECOLI 81 34 -
PFVVTPPLFRLDGQQSSRLRIV AFAB_ECOLI 94 34 -
PFIVTPPLFRLDAGLQGRVRII PSAB_YERPE 90 35 -
PLVALPPLQRLDGAQKGVVRIT PMFD_PROMI 74 36 -
PFIITPPISRVDAKSGQTLRIK MRKB_KLEPN 70 39 -
PFVVTPPLFRLDAKQQNSLRIA CAFM_YERPE 83 36 -
PVIATPPVQRLEPGAKSMVRLS PAPD_ECOLI 70 37 -
FFSPSPMVFKLNPKQKQIVRIV FANE_ECOLI 66 35 -
PFMATPPLFRLDAGMRGRVRVT MYFB_YEREN 89 35 -
DFIATPPIFKMESESRNIIKII CSC2_ECOLI 65 32 -
PFIVTPPILKVESNARTRLKVI SEFB_SALEN 86 34 -

Motif 3 width=18
Element Seqn Id St Int Rpt
PGDRESLFWMNVKAIPSV FIMC_SALTY 100 6 -
PDDRESLFYFNLLDIPPK HFB1_HAEIN 108 7 -
PIDRESLQWICVKAIPPK AGGD_ECOLI 109 6 -
PPDRESLQWICVKGIPPK AFAB_ECOLI 122 6 -
PEDRETLQWLCLTGIPPK PSAB_YERPE 118 6 -
PQDRESLFYLNVREIPPA PMFD_PROMI 104 8 -
AKDKETLWWLNLLEIPPV MRKB_KLEPN 99 7 -
PRDKESLKWLCVKGIPPK CAFM_YERPE 111 6 -
PQDRESLFYFNLREIPPR PAPD_ECOLI 100 8 -
PKDRESIFWLNVQEIPPA FANE_ECOLI 94 6 -
PEDRESLQWLCITGVPPK MYFB_YEREN 117 6 -
PDSQESMRWLCIESMPPI CSC2_ECOLI 93 6 -
NKNEESLYWLCVKGVPPL SEFB_SALEN 114 6 -

Motif 4 width=16
Element Seqn Id St Int Rpt
VLQLAILSRIKLFVRP FIMC_SALTY 127 9 -
FMQIAIRSRLKLFYRP HFB1_HAEIN 137 11 -
NIQVSVSSCIKLFVRP AGGD_ECOLI 147 20 -
NVQLSVSSCIKLFVRP AFAB_ECOLI 160 20 -
DIQMSISTCIKLLFRP PSAB_YERPE 155 19 -
VLQMAMQSRIKLFYRP PMFD_PROMI 127 5 -
ILQLAIRSRFKFIYRP MRKB_KLEPN 127 10 -
FVQFAINNCIKLLVRP CAFM_YERPE 152 23 -
VLQIALQTKIKLFYRP PAPD_ECOLI 123 5 -
SLSLAINNRVKLIYRP FANE_ECOLI 118 6 -
NILLSVGTCMKLLVRP MYFB_YEREN 156 21 -
SINISIRGCIKLIYRP CSC2_ECOLI 125 14 -
NVNVVTNSCIKLIYRP SEFB_SALEN 147 15 -

Motif 5 width=16
Element Seqn Id St Int Rpt
GNHLKITNPSAYYLTL FIMC_SALTY 162 19 -
PKGVLVDNQTPYYMNY HFB1_HAEIN 172 19 -
GNKLKGVNPTPFYMDI AGGD_ECOLI 182 19 -
GNRLKGVNPTPFYINL AFAB_ECOLI 195 19 -
GNYLEVNNPTPFYMNF PSAB_YERPE 190 19 -
GNKFIVNNPTPYYITI PMFD_PROMI 164 21 -
GSSLSVSNPTPFYITV MRKB_KLEPN 161 18 -
GGKLIAENPSPFYMNI CAFM_YERPE 187 19 -
SGGYRIENPTPYYVTV PAPD_ECOLI 159 20 -
GTDSCLENTTPYYFAI FANE_ECOLI 153 19 -
GQQLQVNNPTPFYMNF MYFB_YEREN 191 19 -
GKYLVLKNNTPYYISF CSC2_ECOLI 161 20 -
GNSIVIKNPTSSYVNI SEFB_SALEN 182 19 -
Final Motifs
Motif 1  width=10
Element Seqn Id St Int Rpt
VALGATRVIY FIMC_ECOLI 38 38 -
IALGATRVIY Q56085 34 34 -
IALGATRVIY FIMC_SALTY 27 27 -
VALGATRVIY FOCC_ECOLI 23 23 -
LVITGTRVIY FIMB_BORPE 29 29 -
VVIMGTRVIY O30925 21 21 -
VVIMGTRVIY Q47197 21 21 -
VSLGATRIIY P72210 21 21 -
VIITGTRVIY HFB1_HAEIN 30 30 -
VIITGTRVIY HFB2_HAEIN 30 30 -
VIITGTRVIY P94812 21 21 -
LHLGATRMIY AGGD_ECOLI 37 37 -
IALGATRIIY SFMC_ECOLI 27 27 -
IVISGTRVIY ECPD_ECOLI 27 27 -
LHLGATRVVY AFAB_ECOLI 50 50 -
VKIGTTRVIY PSAB_YERPE 45 45 -
AILGATRVIY CS31_ECOLI 31 31 -
VSLDRTRIVL PMFD_PROMI 28 28 -
IALDRTRVIF Q51905 28 28 -
FVLNGTRFIY Q04821 22 22 -
FVLNGTRFIF O85184 25 25 -
IIVNGTRFIY MRKB_KLEPN 21 21 -
VALSSTRVIY LPFB_SALTY 26 26 -
VTIGESRIIY CAFM_YERPE 37 37 -
VTIGESRIIY O68774 37 37 -
FILNGTRYIY O68439 23 23 -
LHLGATRVVY NFAE_ECOLI 50 50 -
VSLDRTRAVF PAPD_ECOLI 23 23 -
IVLQRTRVIY YRAI_ECOLI 26 26 -
FTLNSTRYIY FANE_ECOLI 21 21 -
VTPDRTRLIF YFCS_ECOLI 30 30 -
VRTGETRIIY MYFB_YEREN 44 44 -
LAADQTRYIF CLPE_ECOLI 36 36 -
LAVDQTRYIF FAEE_ECOLI 36 36 -
VQPDRTRIVF YBGP_ECOLI 22 22 -
LAADQTRYIF O52999 36 36 -
LSADQTRYIF P96324 36 36 -
FEINKTRVIY CSC2_ECOLI 23 23 -
IVIYGTRIIY YEHC_ECOLI 35 35 -
LRLGTTRVIY SEFB_SALEN 42 42 -
IAPDRTRLVF O87659 27 27 -
IGLAATRLVY YCBR_ECOLI 32 32 -
FEINKTRVIY CSC1_ECOLI 23 23 -
VVVGGTRFIF YCBF_ECOLI 37 37 -
IIPDRTRIIM YQIH_ECOLI 30 30 -

Motif 2 width=22
Element Seqn Id St Int Rpt
RFIVTPPLFAMKGKKENTLRIL FIMC_ECOLI 83 35 -
TFIVTPPLFVSEPKSENTLRII Q56085 79 35 -
TFIVTPPLFVSEPKSENTLRII FIMC_SALTY 72 35 -
RFVITPPLFSMQGKKENTLRII FOCC_ECOLI 68 35 -
PFFLTPPLARVDPGKGQTLRIF FIMB_BORPE 78 39 -
PFIITPPVFRMEPLSGQTMRIM O30925 70 39 -
PFIITPPVFRMEPLSGQTMRIM Q47197 70 39 -
DFIVTPPLYILDANKENALRIM P72210 66 35 -
PFVITPPVARVEAKSGQSLRIT HFB1_HAEIN 79 39 -
PFVITPPVARVEAKSGQSLRIT HFB2_HAEIN 79 39 -
PFVITPPVARVEAKSGQSLRIT P94812 70 39 -
PFIITPPLFRLDALQSSRLRIV AGGD_ECOLI 81 34 -
SFIITPPLFVSEPKSENTLRII SFMC_ECOLI 72 35 -
PFTATPPVSRIDAKRGQTIKLM ECPD_ECOLI 76 39 -
PFVVTPPLFRLDGQQSSRLRIV AFAB_ECOLI 94 34 -
PFIVTPPLFRLDAGLQGRVRII PSAB_YERPE 90 35 -
DFIVTPPLFRLDAKRETDIRIV CS31_ECOLI 75 34 -
PLVALPPLQRLDGAQKGVVRIT PMFD_PROMI 74 36 -
PLIVLPPIQRIEPGDKSQIKVQ Q51905 74 36 -
YMVPAPPFFKVRPKEKQIIRIM Q04821 67 35 -
YMVPQPPFFKVGAKQKQVIRIM O85184 69 34 -
PFIITPPISRVDAKSGQTLRIK MRKB_KLEPN 70 39 -
PFIITPPLFKLSPTKNNVLRIV LPFB_SALTY 71 35 -
PFVVTPPLFRLDAKQQNSLRIA CAFM_YERPE 83 36 -
PFVVTPPLFRLDAKQQNSLRIA O68774 83 36 -
SFIAIPSFFKVDGNDNQIIRIM O68439 68 35 -
PFWWTPPLFRRDGQQSSRRRSV NFAE_ECOLI 94 34 -
PVIATPPVQRLEPGAKSMVRLS PAPD_ECOLI 70 37 -
PFIITPPLFRLEAGDDSSLRII YRAI_ECOLI 71 35 -
FFSPSPMVFKLNPKQKQIVRIV FANE_ECOLI 66 35 -
PLTVLPPVQRIDSMMNGQVKVQ YFCS_ECOLI 76 36 -
PFMATPPLFRLDAGMRGRVRVT MYFB_YEREN 89 35 -
TFVVTPSFFKVKPNGQQTLRII CLPE_ECOLI 82 36 -
TFVVTPSFFKVKPNGQQTLRII FAEE_ECOLI 82 36 -
LLVALPPIQRLEPKATSQVRVV YBGP_ECOLI 68 36 -
TFVVTPSFFKVKPNGQQTMRII O52999 82 36 -
TFVVTPSFFKVKPKGQQTLRVI P96324 82 36 -
DFIATPPIFKMESESRNIIKII CSC2_ECOLI 65 32 -
PFMLTPPVAKIGANSGQQVKIK YEHC_ECOLI 84 39 -
PFIVTPPILKVESNARTRLKVI SEFB_SALEN 86 34 -
PLIVVPPVQRIEPSAIGQVKIQ O87659 73 36 -
DFIITPPLFVLNPANENLLRIM YCBR_ECOLI 77 35 -
DFIATPPIFKMESESRNIIKII CSC1_ECOLI 65 32 -
PLLAAPPLILLKPGTTGTLRLL YCBF_ECOLI 88 41 -
FIVTVPPMVRLNPSEQIQIRMI YQIH_ECOLI 76 36 -

Motif 3 width=18
Element Seqn Id St Int Rpt
PQDRESLFWMNVKAIPSM FIMC_ECOLI 112 7 -
PEDRESLFWMNVKAIPSV Q56085 107 6 -
PGDRESLFWMNVKAIPSV FIMC_SALTY 100 6 -
PEDRESLFWVNVKAIPAM FOCC_ECOLI 97 7 -
PSDRESVFWLNVLEVPPK FIMB_BORPE 110 10 -
PADRESLFWLNVLDIPAK O30925 98 6 -
PADRESLFWLNVLDIPAK Q47197 98 6 -
PADRESLFWMNVKAIPSL P72210 94 6 -
PDDRESLFYFNLLDIPPK HFB1_HAEIN 108 7 -
PDDRESLFYFNLLDIPPK HFB2_HAEIN 108 7 -
PDDRESLFYFNLLDIPPK P94812 99 7 -
PIDRESLQWICVKAIPPK AGGD_ECOLI 109 6 -
AADRESLFWMNVKTIPSV SFMC_ECOLI 100 6 -
PKDRESVFWFNVLEVPPK ECPD_ECOLI 105 7 -
PPDRESLQWICVKGIPPK AFAB_ECOLI 122 6 -
PEDRETLQWLCLTGIPPK PSAB_YERPE 118 6 -
PKDRESLKTLCVRGIPPK CS31_ECOLI 103 6 -
PQDRESLFYLNVREIPPA PMFD_PROMI 104 8 -
PQDRESVFYFNLREIPPR Q51905 104 8 -
PSDRESLFWLNVQEIPPK Q04821 95 6 -
PKDRESLFWLNVQEVPPK O85184 97 6 -
AKDKETLWWLNLLEIPPV MRKB_KLEPN 99 7 -
PQDRESVYWINVKAIPAK LPFB_SALTY 99 6 -
PRDKESLKWLCVKGIPPK CAFM_YERPE 111 6 -
PRDKESLKWLCVKGIPPK O68774 111 6 -
PKDRESIFWLNVQEIPPK O68439 96 6 -
PSDRESRQWICVKGIPPK NFAE_ECOLI 122 6 -
PQDRESLFYFNLREIPPR PAPD_ECOLI 100 8 -
PENKESLFYINVRAIPAK YRAI_ECOLI 99 6 -
PKDRESIFWLNVQEIPPA FANE_ECOLI 94 6 -
PADRESMFYFNVREIPPK YFCS_ECOLI 106 8 -
PEDRESLQWLCITGVPPK MYFB_YEREN 117 6 -
PKDKESVYWLNLQDIPPA CLPE_ECOLI 110 6 -
PKDKESVYWLNLQDIPPA FAEE_ECOLI 110 6 -
PGDRETLFFYNMREIPPA YBGP_ECOLI 98 8 -
PEDKESVYWLNLQDIPPA O52999 110 6 -
PQDKESVYWLNLQDIPPA P96324 110 6 -
PDSQESMRWLCIESMPPI CSC2_ECOLI 93 6 -
PTNKESIFYLNVLDIPPN YEHC_ECOLI 112 6 -
NKNEESLYWLCVKGVPPL SEFB_SALEN 114 6 -
PQDRETLFYYNVREIPPQ O87659 103 8 -
AKDRETLFFTSVRAVPST YCBR_ECOLI 105 6 -
PDSQESMRWLCIESMPPT CSC1_ECOLI 93 6 -
PVDRETLFELSIASVPSG YCBF_ECOLI 117 7 -
PKDRETLFYFNVREIPPK YQIH_ECOLI 106 8 -

Motif 4 width=16
Element Seqn Id St Int Rpt
TLQLAIISRIKLYYRP FIMC_ECOLI 138 8 -
VLQLAILSRIKLFVRP Q56085 134 9 -
VLQLAILSRIKLFVRP FIMC_SALTY 127 9 -
YLQFAIVSRIKLLYRP FOCC_ECOLI 123 8 -
VLQLTIRSRLKLFYRP FIMB_BORPE 136 8 -
YLQFAVRSRIKFFFRP O30925 130 14 -
YLQFAVRSRIKFFFRP Q47197 130 14 -
TLQIAIQSRIKLFYRP P72210 120 8 -
FMQIAIRSRLKLFYRP HFB1_HAEIN 137 11 -
FMQIAIRSRLKLFYRP HFB2_HAEIN 137 11 -
FMQIAIRSRLKLFYRP P94812 128 11 -
NIQVSVSSCIKLFVRP AGGD_ECOLI 147 20 -
VLQLAILSRMKLFLRP SFMC_ECOLI 127 9 -
LLQLAFRTRIKLFYRP ECPD_ECOLI 133 10 -
NVQLSVSSCIKLFVRP AFAB_ECOLI 160 20 -
DIQMSISTCIKLLFRP PSAB_YERPE 155 19 -
KLNVSINTCIKLILRP CS31_ECOLI 136 15 -
VLQMAMQSRIKLFYRP PMFD_PROMI 127 5 -
VLQIALQTRIKLFYRP Q51905 127 5 -
VLAVAVNTKVKLIYRP Q04821 120 7 -
VLAIAMNTRVKLIYRP O85184 124 9 -
ILQLAIRSRFKFIYRP MRKB_KLEPN 127 10 -
VLQIAVRTRLKLFYRP LPFB_SALTY 125 8 -
FVQFAINNCIKLLVRP CAFM_YERPE 152 23 -
FVQFAINNCIKLLVRP O68774 152 23 -
IIVVAINTKVKLIYRP O68439 121 7 -
NVQLSVSSCIKLFVRP NFAE_ECOLI 160 20 -
VLQIALQTKIKLFYRP PAPD_ECOLI 123 5 -
ELTLVFKTRIKMFYRP YRAI_ECOLI 126 9 -
SLSLAINNRVKLIYRP FANE_ECOLI 118 6 -
TLQIALQTRIKLFWRP YFCS_ECOLI 129 5 -
NILLSVGTCMKLLVRP MYFB_YEREN 156 21 -
GIAVAVRTKLKLFYRP CLPE_ECOLI 132 4 -
GIAVALRTKLKLFYRP FAEE_ECOLI 132 4 -
ILQVAIQSRIKLFWRP YBGP_ECOLI 124 8 -
GIAVALRTKLKLFYRP O52999 132 4 -
GIAVALRTKLKLFYRP P96324 132 4 -
SINISIRGCIKLIYRP CSC2_ECOLI 125 14 -
ALKFAMQNRIKLFYRP YEHC_ECOLI 138 8 -
NVNVVTNSCIKLIYRP SEFB_SALEN 147 15 -
TLQIALQTRIKVFYRP O87659 126 5 -
TLKIATQSVIKLFWRP YCBR_ECOLI 130 7 -
SINISIRGCIKLIYQP CSC1_ECOLI 125 14 -
SVKVAMRSVFKLFWRP YCBF_ECOLI 140 5 -
VMQVTMQHALKLFWRP YQIH_ECOLI 129 5 -

Motif 5 width=16
Element Seqn Id St Int Rpt
ANSLTLINPTPYYLTV FIMC_ECOLI 173 19 -
GNHLKITNPSAYYLTL Q56085 169 19 -
GNHLKITNPSAYYLTL FIMC_SALTY 162 19 -
NGGLTLFNPTPYYLTV FOCC_ECOLI 158 19 -
NGVLEVHNPTPYYVNL FIMB_BORPE 172 20 -
GDTLQASNPTPYFITF O30925 166 20 -
GDTLQASNPTPYFITF Q47197 166 20 -
NGELIAHNPTPYHITM P72210 155 19 -
PKGVLVDNQTPYYMNY HFB1_HAEIN 172 19 -
PEGVLVDNQTPYYMNY HFB2_HAEIN 172 19 -
PEGVLVDNQTPYYMNY P94812 163 19 -
GNKLKGVNPTPFYMDI AGGD_ECOLI 182 19 -
GNYINVHNPSPFYVTL SFMC_ECOLI 162 19 -
KASLRVTNPTPYYVSF ECPD_ECOLI 172 23 -
GNRLKGVNPTPFYINL AFAB_ECOLI 195 19 -
GNYLEVNNPTPFYMNF PSAB_YERPE 190 19 -
DGNLVAKNKTPYYFTI CS31_ECOLI 171 19 -
GNKFIVNNPTPYYITI PMFD_PROMI 164 21 -
GDRFEVNNPTPYYVTL Q51905 166 23 -
GGEAYLKNPTPYYFAV Q04821 155 19 -
GNETWLKNPTPYYMAI O85184 159 19 -
GSSLSVSNPTPFYITV MRKB_KLEPN 161 18 -
ANQIKVENPSAFNLTF LPFB_SALTY 161 20 -
GGKLIAENPSPFYMNI CAFM_YERPE 187 19 -
GGKLIAENPSPFYMNI O68774 187 19 -
NGNYYLENPTPYYFAI O68439 156 19 -
GNRLKGVNPTPFYINL NFAE_ECOLI 195 19 -
SGGYRIENPTPYYVTV PAPD_ECOLI 159 20 -
DHSLNIYNPTEYYVVF YRAI_ECOLI 161 19 -
GTDSCLENTTPYYFAI FANE_ECOLI 153 19 -
GQAFTVNNPTPYYVII YFCS_ECOLI 166 21 -
GQQLQVNNPTPFYMNF MYFB_YEREN 191 19 -
DGRTMLVNTTPYIFAI CLPE_ECOLI 168 20 -
DGRTMLVNTTPYIFAI FAEE_ECOLI 168 20 -
GNQLTLKNPTAYYLTI YBGP_ECOLI 160 20 -
DGRIMLVNTTPYIFAI O52999 168 20 -
DGRNVLVNTTPYIYAI P96324 168 20 -
GKYLVLKNNTPYYISF CSC2_ECOLI 161 20 -
GNGLVIKNDSANWVTI YEHC_ECOLI 173 19 -
GNSIVIKNPTSSYVNI SEFB_SALEN 182 19 -
GNGYQVSNTTGYYVVL O87659 163 21 -
ADMVTVSNPTPYFITL YCBR_ECOLI 165 19 -
GKYLVLKNNTPYYISF CSC1_ECOLI 161 20 -
SQGVQLTNPTPYYINL YCBF_ECOLI 175 19 -
DGSIRFNNKMPYHVTL YQIH_ECOLI 167 22 -