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PR00966

Identifier
NIAPOTYPTASE  [View Relations]  [View Alignment]  
Accession
PR00966
No. of Motifs
8
Creation Date
10-SEP-1998  (UPDATE 10-JUN-1999)
Title
Potyvirus nuclear inclusion A cysteine protease (C4) signature
Database References

PFAM; PF00863 Peptidase_C4
INTERPRO; IPR001730
Literature References
1. RAWLINGS, N.D. AND BARRETT, A.J.
Families of cysteine peptidases.
METHODS ENZYMOL. 244 461-486 (1994).
 
2. BARRETT, A.J. AND RAWLINGS, N.D.
Families and clans of cysteine peptidases
PERSPECTIVES DRUG DISCOVERY DESIGN 6 1-11 (1996).
 
3. RAWLINGS, N.D. AND BARRETT, A.J.
MEROPS - Peptidase Database
http://www.bi.bbsrc.ac.uk/merops/merops.htm
 
4. RAWLINGS, N.D. AND BARRETT, A.J.
Family C4 - Clan PA - NIA proteinase
http://www.bi.bbsrc.ac.uk/merops/famcards/c4.htm

Documentation
Cysteine protease activity is dependent on an active dyad of cysteine and
histidine, the order and spacing of these residues varying in the known 
families. Nearly half of all cysteine proteases are found exclusively
in viruses [1]. Cysteine protease families have been grouped into five 
clans (designated CA, CB, CC, CD and CE) on the basis of structural and
functional similarity. Families C1, C2 and C10, which belong to the CA clan,
have a Cys/His catalytic diad, and are loosely termed papain-like. Families
in the CB clan have a His/Cys diad, and contain enzymes from RNA viruses
distantly related to chymotrypsin. Enzymes in clan CC are also from RNA
viruses, but have a papain-like Cys/His active site. The remaining two
clans, CD and CE, contain only one family each. Some families have not
yet been asigned to a clan [1-3]. 
 
Two additional clans (PA and PB) have been identified, these containing a
mixture of serine, cysteine and threonine proteases. Clan PA contains a
catalytically-active serine or cysteine nucleophilic residue as part of the
ordered triad His, Asp, Ser (or Cys). Clan PB contains a serine, cysteine or
threonine active residue at the N-terminus of the mature protease [3]. 
 
Nuclear inclusion A (NIA) proteases from potyviruses belong to the C4 
cysteine protease family, which is part of the PB clan [1,2,4]. Potyviruses
include plant viruses in which the single-stranded RNA encodes a polyprotein
with NIA protease activity, where proteolytic cleavage is specific for
Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself 
by Gln+Gly cleavage at both the N- and C-termini. It further processes the
polyprotein by cleavage at five similar sites in the C-terminal half of the
sequence. In addition to its C-terminal protease activity, the NIA protease 
contains an N-terminal domain that has been implicated in the transcription
process [1]. 
 
NIAPOTYPTASE is an 8-element fingerprint that provides a signature for 
potyvirus nuclear inclusion proteases (C4 cysteine protease). The
fingerprint was derived from an initial alignment of 3 sequences: the 
motifs were drawn from conserved regions spanning virtually the full 
length of the NIA protease domain. Two iterations on OWL30.2 were required
to reach convergence, at which point a true set comprising 52 sequences was 
identified. Several partial matches were also found, all of which are NIA
fragments that lack portions of sequence bearing a number of motifs.
 
An update on SPTR37_9f identified a true set of 41 sequences, and 5
partial matches.
Summary Information
  41 codes involving  8 elements
0 codes involving 7 elements
0 codes involving 6 elements
0 codes involving 5 elements
1 codes involving 4 elements
0 codes involving 3 elements
4 codes involving 2 elements
Composite Feature Index
84141414141414141
700000000
600000000
500000000
401010110
300000000
200120041
12345678
True Positives
O11436        O36979        O39734        O56075        
O73463 O89525 O92645 P89038
P90213 POLG_BCMVN POLG_LMV0 POLG_LMVE
POLG_PEMVC POLG_PPVD POLG_PPVNA POLG_PPVRA
POLG_PPVSK POLG_PRSVH POLG_PSBMV POLG_PVYHU
POLG_PVYN POLG_SBMVG POLG_TEV POLG_TUMVJ
POLG_TUMVQ POLG_TVMV POLG_ZYMVC POLG_ZYMVR
Q65852 Q65892 Q82933 Q84898
Q85057 Q85071 Q85074 Q85197
Q85265 Q88501 Q88506 Q88507
Q88925
True Positive Partials
Codes involving 4 elements
P89201
Codes involving 2 elements
O72347 POL1_BAYMG POL1_BAYMJ POLG_BSTV1
Sequence Titles
O11436      POLYPROTEIN - RYEGRASS MOSAIC VIRUS.          
O36979 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - ZUCCHINI YELLOW MOSAIC VIRUS (STRAIN SINGAPORE) (ZYMV).
O39734 POLYPROTEIN - SWEET POTATO FEATHERY MOTTLE VIRUS.
O56075 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PEANUT MOTTLE VIRUS (STRAIN M).
O73463 POLYPROTEIN - MAIZE DWARF MOSAIC VIRUS (MDMV).
O89525 POLYPROTEIN - RYEGRASS MOSAIC VIRUS.
O92645 POLYPROTEIN - CLOVER YELLOW VEIN VIRUS.
P89038 RNA GENOME - PLUM POX POTYVIRUS (STRAIN SK 68) (PPV).
P90213 PRSV YK POLYPROTEIN - PAPAYA RINGSPOT VIRUS.
POLG_BCMVN GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - BEAN COMMON MOSAIC VIRUS (STRAIN NL-3 / MICHIGAN) (BCMV).
POLG_LMV0 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - LETTUCE MOSAIC VIRUS (STRAIN 0 / FRENCH ISOLATE) (LMV).
POLG_LMVE GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - LETTUCE MOSAIC VIRUS (STRAIN E) (LMV).
POLG_PEMVC GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE) (PEMV) (PEPMOV C).
POLG_PPVD GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PLUM POX POTYVIRUS (STRAIN D) (PPV).
POLG_PPVNA GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PLUM POX POTYVIRUS (ISOLATE NAT) (PPV).
POLG_PPVRA GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PLUM POX POTYVIRUS (STRAIN RANKOVIC) (PPV).
POLG_PPVSK GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PLUM POX POTYVIRUS (STRAIN SK 68) (PPV).
POLG_PRSVH GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PAPAYA RINGSPOT VIRUS (STRAIN P / MUTANT HA).
POLG_PSBMV GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1).
POLG_PVYHU GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - POTATO VIRUS Y (STRAIN HUNGARIAN) (PVY).
POLG_PVYN GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - POTATO VIRUS Y (STRAIN N) (PVY).
POLG_SBMVG GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - SOYBEAN MOSAIC VIRUS (STRAIN G2) (SMV).
POLG_TEV GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - TOBACCO ETCH VIRUS (TEV).
POLG_TUMVJ GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - TURNIP MOSAIC VIRUS (STRAIN JAPANESE) (TUMV).
POLG_TUMVQ GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - TURNIP MOSAIC VIRUS (STRAIN QUEBEC) (TUMV).
POLG_TVMV GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - TOBACCO VEIN MOTTLING VIRUS (TVMV).
POLG_ZYMVC GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - ZUCCHINI YELLOW MOSAIC VIRUS (STRAIN CALIFORNIA) (ZYMV).
POLG_ZYMVR GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - ZUCCHINI YELLOW MOSAIC VIRUS (STRAIN REUNION ISLAND) (ZYMV).
Q65852 POLYPROTEIN - BEAN YELLOW MOSAIC VIRUS.
Q65892 POLYPROTEIN - BEAN YELLOW MOSAIC VIRUS.
Q82933 JOHNSON GRASS MOSAIC VIRUS PROTEASE 1 AND 3, HELPER COMPONENT 6K PROTEIN, COAT PROTEIN, NUCLEAR INCLUSION PROTEINS - JOHNSONGRASS MOSAIC VIRUS.
Q84898 GENOME POLYPROTEIN (CONTAINS: N-TERMINAL PROTEIN; HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); 42-50 KD PROTEIN; CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN; NUCLEAR INCLUSION PROTEIN A (NI-A) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN) - TOBACCO VEIN MOTTLING VIRUS (TVMV).
Q85057 POLYPROTEIN - PEANUT STRIPE VIRUS.
Q85071 POLYPROTEIN - PEANUT STRIPE VIRUS.
Q85074 POLYPROTEIN - PEA SEED-BORNE MOSAIC VIRUS.
Q85197 POLYPROTEIN - POTATO VIRUS A.
Q85265 POLYPROTEIN - POTATO VIRUS Y.
Q88501 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - TOBACCO ETCH VIRUS (TEV).
Q88506 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - TOBACCO ETCH VIRUS (TEV).
Q88507 POLYPROTEIN - TOBACCO ETCH VIRUS (TEV).
Q88925 POLYPROTEIN - TOBACCO VEIN MOTTLING VIRUS (TVMV).

P89201 POLYPROTEIN - SWEET POTATO MILD MOTTLE VIRUS.

O72347 POLYPROTEIN - WHEAT STREAK MOSAIC VIRUS.
POL1_BAYMG GENOME POLYPROTEIN 1 [CONTAINS: CYTOPLASMIC INCLUSION PROTEIN (CI); RNA-DIRECTED RNA POLYMERASE (EC 2.7.7.48); COAT PROTEIN (CP)] - BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) (BAYMV).
POL1_BAYMJ GENOME POLYPROTEIN 1 [CONTAINS: CYTOPLASMIC INCLUSION PROTEIN (CI); RNA-DIRECTED RNA POLYMERASE (EC 2.7.7.48); COAT PROTEIN (CP)] - BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1) (BAYMV).
POLG_BSTV1 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPER COMPONENT PROTEINASE (EC 3.4.22.-) (HC-PRO); PROTEIN P3; 6 KD PROTEIN 1 (6K1); CYTOPLASMIC INCLUSION PROTEIN (CI); 6 KD PROTEIN 2 (6K2); GENOME-LINKED PROTEIN (VPG); NUCLEAR INCLUSION PROTEIN A (NI-A) (NIA) (EC 3.4.22.-) (49 KD PROTEINASE) (49 KD-PRO); NUCLEAR INCLUSION PROTEIN B (NI-B) (NIB) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48); COAT PROTEIN (CP)] - BROME STREAK VIRUS (STRAIN 11-CAL) (BSTV) (BROME STREAK MOSAIC RYMOVIRUS).
Scan History
OWL30_2    2  65   NSINGLE    
SPTR37_9f 2 106 NSINGLE
Initial Motifs
Motif 1  width=23
Element Seqn Id St Int Rpt
YEVAAEPEALEHYFGSAYNNKGK POLG_TEV 1870 1870 -
FEIDNNDDTIEEFFGSAYRKKGK POLG_PVYN 1866 1866 -
FEIDNNEDTIEEYFGSAYTKKGK POLG_PEMVC 1865 1865 -

Motif 2 width=22
Element Seqn Id St Int Rpt
RGMGAKSRKFINMYGFDPTDFS POLG_TEV 1898 5 -
VGMGKSSRRFINMYGFDPTEYS POLG_PVYN 1894 5 -
VGMGRTNRRFINMYGFEPGQFS POLG_PEMVC 1893 5 -

Motif 3 width=23
Element Seqn Id St Int Rpt
KVLKVDLTPHSSLRASEKSTAIM POLG_TEV 1982 62 -
KALKIDLMPHNPLKVCDKTNGIA POLG_PVYN 1978 62 -
KALKVDLTPHNPLRVSDKASAIM POLG_PEMVC 1977 62 -

Motif 4 width=22
Element Seqn Id St Int Rpt
FPERENELRQTGMAVPVAYDQL POLG_TEV 2006 1 -
FPERELELRQTGPAVEVDVKDI POLG_PVYN 2002 1 -
FPEREGELRQTGQAVEVDVCDI POLG_PEMVC 2001 1 -

Motif 5 width=22
Element Seqn Id St Int Rpt
SLFKGPRDYNPISSTICHLTNE POLG_TEV 2040 12 -
SLMRGLRDFNPIAQTVCRLKVS POLG_PVYN 2034 10 -
TLMRGLRDYNPIAQTVCKLTVK POLG_PEMVC 2033 10 -

Motif 6 width=18
Element Seqn Id St Int Rpt
IDGRDMIIIRMPKDFPPF POLG_TEV 2114 52 -
IKGRDIILIKMPKDFPVF POLG_PVYN 2108 52 -
LKGRDMIIIKMPKDFPVF POLG_PEMVC 2107 52 -

Motif 7 width=19
Element Seqn Id St Int Rpt
FWKHWIQTKDGQCGSPLVS POLG_TEV 2176 44 -
FWKHWIETDNGHCGLPVVS POLG_PVYN 2170 44 -
FWKHWISTDDGHCGLPIVS POLG_PEMVC 2169 44 -

Motif 8 width=20
Element Seqn Id St Int Rpt
DGFIVGIHSASNFTNTNNYF POLG_TEV 2197 2 -
DGCIVGIHSLANNAHTTNYY POLG_PVYN 2191 2 -
DGFILGLHSLANNRNSENYY POLG_PEMVC 2190 2 -
Final Motifs
Motif 1  width=23
Element Seqn Id St Int Rpt
REVYGDDSTMEAYFGSAYSKKGK POLG_PPVNA 1878 1878 -
REVYGDDSTMEDYFGSAYSKKGK P89038 1879 1879 -
REVYGDDSTMEDYFGSAYSKKGK POLG_PPVD 1879 1879 -
REVYGDDSTMEDYFGSAYSKKGK POLG_PPVSK 1878 1878 -
REVYGDDSTMADYFGSAYSKKGK POLG_PPVRA 1878 1878 -
REVYGDDDTIEHFFGDAYTKKGK POLG_TUMVJ 1946 1946 -
REVYGDDDTIEHFFGDAYTKKGK POLG_TUMVQ 1945 1945 -
YEVAAEPEALEHYFGSAYNNKGK POLG_TEV 1870 1870 -
YEVAAEPEALEHYFGSAYNNKGK Q88501 21 21 -
YEVAAEPEALEHYFGSAYNNKGK Q88506 1870 1870 -
YEVAAEPEALEHYFGSAYNNKGK Q88507 1870 1870 -
REVYADDYTMEHTFGEAYTKKGK Q85057 2007 2007 -
REVYADDYTMEHTFGEAYTKKGK Q85071 2007 2007 -
FEVHADDGTIEHFFGSAYTKKGK O39734 2244 2244 -
FEIDNNDDTIEEFFGSAYRKKGK POLG_PVYN 1866 1866 -
REVYADDYTMEHRFGEAYTKKGK POLG_SBMVG 1872 1872 -
HYVEAPDSTLEHYFGSAYTKKGK Q85197 1864 1864 -
FEIDNNDDTIEEFFGSAYRKKGK POLG_PVYHU 1866 1866 -
FEIDNNDDTIEEFFGSAYRKKGK Q85265 1866 1866 -
FEIDNNEDTIEEYFGSAYTKKGK POLG_PEMVC 1865 1865 -
REVYGDDGTIEHYFGEAYTKKGN POLG_PRSVH 2115 2115 -
REVYGDDGTIEHFFGEAYTKKGK O56075 1887 1887 -
VEVYADEGTIVENFGSKYTKKGK Q65852 1852 1852 -
MEVYADEGTIVENFGSKYTKKGK Q65892 1852 1852 -
REVYGDDGTIEHYFGEAYTKKGN P90213 2115 2115 -
REIFGDDDTIGRTFGEAYTKRGK POLG_ZYMVC 1872 1872 -
REIFGDNDTIGRTFGEAYTKRGK O36979 1875 1875 -
REVYADDYTMEHTFGEAYTKKGK POLG_BCMVN 1881 1881 -
YEVFADEDTKRHYFGEAYTKKGK POLG_PSBMV 1975 1975 -
YIMHGEGDTIEHFFGAAYTKKGK Q88925 1837 1837 -
IEVYGDDATMEHYFGAAYTEKGK POLG_LMVE 2043 2043 -
YIMHGEGDTIEHFFGAAYTKKGK POLG_TVMV 1819 1819 -
YIMHGEGDTIEHFFGAAYTKKGK Q84898 1837 1837 -
FEVYADEDSTRHYFGDSYTKKGK Q85074 1969 1969 -
IEVYGDDATMEHYFGAAYTEKGK POLG_LMV0 2043 2043 -
YEVHADEGTLVENFGTRYSKKGK O92645 1870 1870 -
REVYGDDATIEYYFGEAYTKKPK Q82933 1824 1824 -
REIFGDDETIGRTFGEAYTKRGK POLG_ZYMVR 1875 1875 -
YEVYADEREIQENYGEAYTKHGR O89525 1828 1828 -
YDVTGSKDAIEENFGSAYVKKDK O73463 1819 1819 -
YEVYADEREIQENYGEAYTKHGR O11436 1828 1828 -

Motif 2 width=22
Element Seqn Id St Int Rpt
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVNA 1906 5 -
RGMGTKTRKFVNMYGYDPTDYN P89038 1907 5 -
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVD 1907 5 -
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVSK 1906 5 -
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVRA 1906 5 -
RGLGHKNRKFINMYGFDPEDFS POLG_TUMVJ 1974 5 -
RGIGHKNRKFINMYGFDPEDFS POLG_TUMVQ 1973 5 -
RGMGAKSRKFINMYGFDPTDFS POLG_TEV 1898 5 -
RGMGAKSRKFINMYGFDPTDFS Q88501 49 5 -
RGMGAKSRKFINMYGFDPTDFS Q88506 1898 5 -
RGMGAKSRKFINMYGFDPTDFS Q88507 1898 5 -
KGMGRKTRNFVHMYGVEPENYS Q85057 2037 7 -
KGMGRKTRNFVHMYGVEPENYS Q85071 2037 7 -
TGMGSKNRKFINMYGFDPTEYS O39734 2272 5 -
VGMGKSSRRFINMYGFDPTEYS POLG_PVYN 1894 5 -
KGMGRKSRNFIHLYGVEPENYS POLG_SBMVG 1902 7 -
HGMGKKNHRFVNMYGFDPSDYT Q85197 1892 5 -
VGMGKSSRRFVNMYGFDPTEYS POLG_PVYHU 1894 5 -
VGMGKSSRRFVNMYGFDPTEYS Q85265 1894 5 -
VGMGRTNRRFINMYGFEPGQFS POLG_PEMVC 1893 5 -
HGMGVKTRKFVATYGFKPEDYS POLG_PRSVH 2143 5 -
KGMGRKTRRFIHMYGFDPTEYS O56075 1917 7 -
VGMGTKTRKFTNMYGFDPTEYS Q65852 1880 5 -
TGMGTKTRRFTNMYGFDPTEYS Q65892 1880 5 -
HGMGVKTRKFVATYGFKPEDYS P90213 2143 5 -
KGMGRKTRNFVHLYGVEPENYS POLG_ZYMVC 1902 7 -
KGMGRKTRNFVHLYGVEPEIYS O36979 1905 7 -
KGMGKKSRGFIHMYGVEPENYS POLG_BCMVN 1911 7 -
RGMGVKTKKFVNVYGFDPCEYS POLG_PSBMV 2003 5 -
HGAGTKAHKFVNMYGVSPDEYS Q88925 1865 5 -
KGMGTKNRRFVNMYGYNPEDYS POLG_LMVE 2071 5 -
HGAGTKAHKFVNMYGVSPDEYS POLG_TVMV 1847 5 -
HGAGTKAHKFVNMYGVSPDEYS Q84898 1865 5 -
RGMGFKTRKFVNVYGFDPCEYS Q85074 1997 5 -
KGMGTKNRRFVNMYGYNPEDFS POLG_LMV0 2071 5 -
VGLGAKTRRFTNMYGFDPTEYS O92645 1898 5 -
HGMGFKTRRFTHIYGIDPTEYD Q82933 1852 5 -
KGMGRKTRNFVHLYGVEPENYS POLG_ZYMVR 1905 7 -
KGMGSKTREFTNFYGFDPAEYD O89525 1857 6 -
VGLGVKQHKFYMLYNFDPQDYN O73463 1847 5 -
KGTGSKTREFTNFYGFDPAEYD O11436 1857 6 -

Motif 3 width=23
Element Seqn Id St Int Rpt
KALKVDLTPHNPLRVCDKTATIA POLG_PPVNA 1990 62 -
KALKVDLTPHNPLRVCDKTATIA P89038 1991 62 -
KALKVDLTPHNPLRVCDKTATIA POLG_PPVD 1991 62 -
KALKVDLTPHNPLRVCDKTATIA POLG_PPVSK 1990 62 -
KALKVDLTPHNPLRVCDKTATIA POLG_PPVRA 1990 62 -
KALKVDLTPHIPLKVCDLHATIA POLG_TUMVJ 2058 62 -
KALKVDLTPHIPLKVCDLHATIA POLG_TUMVQ 2057 62 -
KVLKVDLTPHSSLRASEKSTAIM POLG_TEV 1982 62 -
KVLKVDLTPHSSLRASEKSTAIM Q88501 133 62 -
KVLKVDLTPHSSLRASEKSTAIM Q88506 1982 62 -
KVLKVDLTPHSSLRASEKSTAIM Q88507 1982 62 -
EALKVDLTPHRPTLLCKNSNAIS Q85057 2121 62 -
EALKVDLTPHRPTLLCKNSNAIS Q85071 2121 62 -
AALKVDLTPHNPLLACERHSTIA O39734 2356 62 -
KALKIDLMPHNPLKVCDKTNGIA POLG_PVYN 1978 62 -
EALKVDLTPHRPTLLCQNSNAIA POLG_SBMVG 1986 62 -
QILKIDLTPHIPLKVCDATNNIA Q85197 1976 62 -
KALKIDLMPHNPLKICDKSNGIA POLG_PVYHU 1978 62 -
KALKIDLMPHNPLKICDKSNGIA Q85265 1978 62 -
KALKVDLTPHNPLRVSDKASAIM POLG_PEMVC 1977 62 -
AALEVDLTPHNPLKVCDNKLTIA POLG_PRSVH 2227 62 -
KALKIDLTPHNPLAVGRGGSSIA O56075 2001 62 -
KVLKIDLTPHKPLLYSEKFGNIM Q65852 1964 62 -
KVLKVDLTPHKPLLYSDKFGNIM Q65892 1964 62 -
TALEVDLTPHNPLKVCDTKLTIA P90213 2227 62 -
EALKVDLTPHVPLLLCRNTNAIA POLG_ZYMVC 1986 62 -
EALKVDLTPHVPLLLCRNTNAIA O36979 1989 62 -
EALKVDLTPHRPTLLCMNSNAIA POLG_BCMVN 1995 62 -
PALKIDLNPHNPMRVCDKAETIA POLG_PSBMV 2087 62 -
PILKVDLTPHIPLKVCESNNIAG Q88925 1947 60 -
AALEIDMTPHNSCQLGTKTNNIA POLG_LMVE 2153 60 -
PILKVDLTPHIPLKVCESNNIAG POLG_TVMV 1929 60 -
PILKVDLTPHIPLKVCESNNIAG Q84898 1947 60 -
PALKIDLTPHNPMRVCDRVETIA Q85074 2081 62 -
AALEIDMTPHNSCQLGAKTNNIA POLG_LMV0 2153 60 -
KVMRIDLTPHNPLLASDVSTTIM O92645 1982 62 -
NALKVDLTLHNPLALCRTNAIAG Q82933 1936 62 -
EALKFDFTPHVPSLSCSNSNAHA POLG_ZYMVR 1989 62 -
AARRVDLVPHNPMQVGRLSNNIA O89525 1943 64 -
NALKVDMTPHEPLRVVTGNNIAG O73463 1931 62 -
AARRVDLVPHNPMQVGRLSNNIA O11436 1943 64 -

Motif 4 width=22
Element Seqn Id St Int Rpt
FPEREFELRQTGHPVFVEPNAI POLG_PPVNA 2014 1 -
FPEREFELRQTGHPIFVEPNAI P89038 2015 1 -
FPEREFELRQTGHPIFVEPNAI POLG_PPVD 2015 1 -
FPEREFELRQTGHPTFVEPNAI POLG_PPVSK 2014 1 -
FPEREFELRQTGHPVFVEPNAI POLG_PPVRA 2014 1 -
FPERENELRQTGKAQPINIDEV POLG_TUMVJ 2082 1 -
FPERENELRQTGKAQPINIDEV POLG_TUMVQ 2081 1 -
FPERENELRQTGMAVPVAYDQL POLG_TEV 2006 1 -
FPERENELRQTGMAVPVAYDQL Q88501 157 1 -
FPERENELRQTGMAVPVAYDQL Q88506 2006 1 -
FPERENELRQTGMAVPVAYDQL Q88507 2006 1 -
FPEREDELRQTGHPVHIKRSEV Q85057 2145 1 -
FPEREDELRQTGHPVHIKRSEV Q85071 2145 1 -
YPEYEGVLRQTGHPIKMTLNDV O39734 2380 1 -
FPERELELRQTGPAVEVDVKDI POLG_PVYN 2002 1 -
FPEREDELRQTGLPQVVSKSDV POLG_SBMVG 2010 1 -
HPDREGELRQTGKGQLLDYAEL Q85197 2000 1 -
FPERELELRQTGPAIEVDVKDI POLG_PVYHU 2002 1 -
FPERELELRQTGPAIEVDVKDI Q85265 2002 1 -
FPEREGELRQTGQAVEVDVCDI POLG_PEMVC 2001 1 -
FPDREAELRQTGPPRTIQVDQV POLG_PRSVH 2251 1 -
FPEREYELRQTGKPLEVKKSEV O56075 2025 1 -
YPEREGELRQTGTAEFVDPKEL Q65852 1988 1 -
YPEREGELRQTGTAEFIDPKEL Q65892 1988 1 -
FPDREAELRQTGPPKTILVDQV P90213 2251 1 -
YPERENELRQTGTPVKVSFKDV POLG_ZYMVC 2010 1 -
YPERENELRQTGTPIKVSFKEV O36979 2013 1 -
FPEREDELRQTVPMSAVPKPNE POLG_BCMVN 2019 1 -
FPEREFELRQSGSATLVPYSEV POLG_PSBMV 2111 1 -
FPEREGELRRTGPTETLPFDAL Q88925 1970 0 -
FVDREYELRQTGEARVVAPALI POLG_LMVE 2177 1 -
FPEREGELRRTGPTETLPFDAL POLG_TVMV 1952 0 -
FPEREGELRRTGPTETLPFDAL Q84898 1970 0 -
FPERAYELRQSGPATLISYSDV Q85074 2105 1 -
YVDREYELRQTGEARVVAPALI POLG_LMV0 2177 1 -
YPEREGELRQTGKARLVDPSEL O92645 2006 1 -
FPEYEGELRQTGPSVVIPKEEV Q82933 1959 0 -
YPERENELRQTGTPVKVSLKDV POLG_ZYMVR 2013 1 -
FPTHDGELRQSRPSRPLQKDQV O89525 1967 1 -
FPEYEGTLRQTGRAQVIPSEQV O73463 1954 0 -
FPTHDGELRQSRPSRPIQKDQV O11436 1967 1 -

Motif 5 width=22
Element Seqn Id St Int Rpt
SLFRGLRDYNPIASSICQLNNS POLG_PPVNA 2052 16 -
SLFRGLRDYNPIASSICQLNNS P89038 2053 16 -
SLFRGLRDYNPIASSICQLNNS POLG_PPVD 2053 16 -
SLFRGLRDYNPIASSICQLNNS POLG_PPVSK 2052 16 -
SLFRGLRDYNPIASSICQLNNS POLG_PPVRA 2052 16 -
SMFRGLRDYNPISNNICHLTNV POLG_TUMVJ 2119 15 -
SMFRGLRDYNPISNNICHLTNV POLG_TUMVQ 2118 15 -
SLFKGPRDYNPISSTICHLTNE POLG_TEV 2040 12 -
SLFKGPRDYNPISSTICHLTNE Q88501 191 12 -
SLFKGPRDYNPISSTICHLTNE Q88506 2040 12 -
SLFKGPRDYNPISSAICHLTNE Q88507 2040 12 -
SIYKGLRDYNGISSLVCQLTNI Q85057 2179 12 -
SIYKGLRDYNGISSLVCQLTNI Q85071 2179 12 -
SLFRGLRDYNPIASVICHLVNE O39734 2417 15 -
SLMRGLRDFNPIAQTVCRLKVS POLG_PVYN 2034 10 -
SVYKGLRDYSGISTLICQLTNS POLG_SBMVG 2044 12 -
SMFRGVRDYNPISSVICQLENE Q85197 2034 12 -
SLMRGLRDFNPIAQTVCRVKVS POLG_PVYHU 2034 10 -
SLMRGLRDFNPIAQTVCRVKVS Q85265 2034 10 -
TLMRGLRDYNPIAQTVCKLTVK POLG_PEMVC 2033 10 -
SLCQGMRNYNGIASVVCHLKNT POLG_PRSVH 2285 12 -
SMCRGLRNYNPIATSICKLVNE O56075 2060 13 -
SKIGGLRDYNPIASNVCLLENE Q65852 2024 14 -
SKIGGLRDYNPIAANVCLLENE Q65892 2024 14 -
SLCQGMRNYNGIASVVCHLKNT P90213 2285 12 -
SIYKGVRDYNGISTIVCQLTND POLG_ZYMVC 2044 12 -
SIYKGVRDYNGISTIVCQLTND O36979 2047 12 -
STYKGLRDYSSVSTLICRLVNS POLG_BCMVN 2048 7 -
SLHFGLRDYNPIAQAVCRITNT POLG_PSBMV 2152 19 -
ALLKGVRDFNPISACVCLLENS Q88925 2004 12 -
TLFRGLRDYNPIASAICLLTNE POLG_LMVE 2217 18 -
ALLKGVRDFNPISACVWLLENS POLG_TVMV 1986 12 -
ALLKGVRDFNPISACVWLLENS Q84898 2004 12 -
SLHFGLRDYNPIAQAVCRITNT Q85074 2146 19 -
TLFRGLRDYNPIAAAICLLTNE POLG_LMV0 2217 18 -
NRISGLRDYNPISQNVCLLTNE O92645 2042 14 -
SAIHGVANYNPISDNICLLKND Q82933 1994 13 -
SIYKGVRDYNGISTIVCQLTND POLG_ZYMVR 2047 12 -
SIAKGLRDYHPVSSNLCALEYY O89525 2002 13 -
SMLTGLVDYTPIANQIGIIENH O73463 1989 13 -
SIAKGLRDYHPVSSNLCALEYY O11436 2002 13 -

Motif 6 width=18
Element Seqn Id St Int Rpt
CKGRDIVIIRLPKDFPPF POLG_PPVNA 2126 52 -
CKGRDIVIIRLPKDFPPF P89038 2127 52 -
CKGRDIVIIRLPKDFPPF POLG_PPVD 2127 52 -
CKGRDILIIRLPKDFPPF POLG_PPVSK 2126 52 -
CKGRDIVIIRLPKDFPPF POLG_PPVRA 2126 52 -
IPDRDLLLIRLPKDVPPF POLG_TUMVJ 2193 52 -
IPDRDLLLIRLPKDVPPF POLG_TUMVQ 2192 52 -
IDGRDMIIIRMPKDFPPF POLG_TEV 2114 52 -
IDGRDMIIIRMPKDFPPF Q88501 265 52 -
IDGRDMIIIRMPKDFPPF Q88506 2114 52 -
IDGRDMMLIRMPKDFPPF Q88507 2114 52 -
IEGKDAILIRMPKDFPPF Q85057 2253 52 -
IEGKDAILIRMPKDFPPF Q85071 2253 52 -
CADRDILIIRMPKDIPPF O39734 2491 52 -
IKGRDIILIKMPKDFPVF POLG_PVYN 2108 52 -
IQGRDVILIRMPKDFPPF POLG_SBMVG 2118 52 -
VEGRDVLIIKMPKDFPPF Q85197 2108 52 -
IKGRDIIIIKMPKDFPVF POLG_PVYHU 2108 52 -
IKGRDIIIIKMPKDFPVF Q85265 2108 52 -
LKGRDMIIIKMPKDFPVF POLG_PEMVC 2107 52 -
VGKTDLLIIRMPKDFPPF POLG_PRSVH 2358 51 -
MAKKDMIIIKMPCDVPPF O56075 2134 52 -
IDGHDLLLIQMPKDFPVF Q65852 2098 52 -
IEGHDLLLIQMPKDFPVF Q65892 2098 52 -
VGKTDLLIIRMPKDFPPF P90213 2358 51 -
IEGKDVVLVRMPKDFPPF POLG_ZYMVC 2118 52 -
IEGKDVVLVRMPKDFPPF O36979 2121 52 -
IEGKDAILIRMPRDFPPF POLG_BCMVN 2122 52 -
VKDKDMVIVRLPKDFPPF POLG_PSBMV 2226 52 -
VEGRDILVIKMAKDFPPF Q88925 2078 52 -
CEGRDIMVIILTPDFPPF POLG_LMVE 2291 52 -
VEGRDIIVIKMAKDFPPF POLG_TVMV 2060 52 -
VEGRDIIVIKMAKDFPPF Q84898 2078 52 -
VKDKDMVIVRLPKDFPPF Q85074 2220 52 -
CEGRDIMVIILTPDFPPF POLG_LMV0 2291 52 -
LEGHDILLIQLPRDFPVF O92645 2116 52 -
IEGRDIILIRLPKDHPPF Q82933 2068 52 -
IEGKDVVLVRMPKTFPPF POLG_ZYMVR 2121 52 -
LCGSDIIVIKGPKDMPPA O89525 2076 52 -
VKGRDLVIIQLPKDFPPF O73463 2063 52 -
LCGSDIIVIKGPKDMPPA O11436 2076 52 -

Motif 7 width=19
Element Seqn Id St Int Rpt
FWKHWISTKDGHCGLPIVS POLG_PPVNA 2188 44 -
FWKHWISTKDGHCGLPIVS P89038 2189 44 -
FWKHWISTKDGHCGLPIVS POLG_PPVD 2189 44 -
FWKHWISTKDGHCGLPIVS POLG_PPVSK 2188 44 -
FWKHWISTKDGHCGLPIVS POLG_PPVRA 2188 44 -
FWKHWISTKDGQCGSPMVS POLG_TUMVJ 2255 44 -
FWKHWISTKDGQCGSPMVS POLG_TUMVQ 2254 44 -
FWKHWIQTKDGQCGSPLVS POLG_TEV 2176 44 -
FWKHWIQTKDGQCGSPLVS Q88501 327 44 -
FWKHWIQTKDGQCGSPLVS Q88506 2176 44 -
FWKHWIQTKDGHCGSPLVS Q88507 2176 44 -
FWIHWITTQDGYCGLPLVS Q85057 2315 44 -
FWIHWITTQDGYCGLPLVS Q85071 2315 44 -
FWKHWIDTKDGHCGLPLVS O39734 2553 44 -
FWKHWIETDNGHCGLPVVS POLG_PVYN 2170 44 -
FWIHWITTQDGFCGLPLVS POLG_SBMVG 2180 44 -
FWKHWISTKEGHCGSPIVS Q85197 2170 44 -
FWKHWIETNDGHCGLPVVS POLG_PVYHU 2170 44 -
FWKHWIETNDGHCGLPVVS Q85265 2170 44 -
FWKHWISTDDGHCGLPIVS POLG_PEMVC 2169 44 -
FGCHWISTNDGDCGNPLVS POLG_PRSVH 2419 43 -
YWRHWVSTKDGDCGLPLVS O56075 2196 44 -
FFKHWISTVAGQCGNPMVS Q65852 2160 44 -
FFKHWISTVAGQCGNPMVS Q65892 2160 44 -
FGSHWISTNDGDCGNPLVS P90213 2419 43 -
YWIHWISTNEGDCGLPMVS POLG_ZYMVC 2180 44 -
YWIHWISTNEGDCGLPMVS O36979 2183 44 -
FWVHWITTQDGDCGLPMVS POLG_BCMVN 2184 44 -
YWKHWITTKEGHCGLPAVA POLG_PSBMV 2288 44 -
FWQHWITTKDGQCGSPLVS Q88925 2140 44 -
LWKHWITTKDGHCGLPLVS POLG_LMVE 2353 44 -
FWQHWITTKDGQCGSPLVS POLG_TVMV 2122 44 -
FWQHWITTKDGQCGSPLVS Q84898 2140 44 -
YWKHWITTKEGHCGLPVVA Q85074 2282 44 -
LWKHWITTKDGHCGLPLVS POLG_LMV0 2353 44 -
FYKHWISTVAGHCGNPMVS O92645 2178 44 -
FWKHWISTKAGYCGLPLVN Q82933 2129 43 -
YWIHWISTNEGDCGLPMVS POLG_ZYMVR 2183 44 -
FWKHWITTKYGNCGLPMVS O89525 2137 43 -
FWSHWISTTGGQCGLPLVD O73463 2125 44 -
FWKHWITTKYGNCGLPMVS O11436 2137 43 -

Motif 8 width=20
Element Seqn Id St Int Rpt
DGSILGLHSLANSTNTQNFY POLG_PPVNA 2209 2 -
DGSILGLHSLANSTNTQNFY P89038 2210 2 -
DGSILGLHSLANSTNTQNFY POLG_PPVD 2210 2 -
DGSILGLHSLANSTNTQNFY POLG_PPVSK 2209 2 -
DGSILGLHSLANSTNTQNFY POLG_PPVRA 2209 2 -
DGKILGLHSLANFQNSINYF POLG_TUMVJ 2276 2 -
DGKILGLHSLANFQNSINYF POLG_TUMVQ 2275 2 -
DGFIVGIHSASNFTNTNNYF POLG_TEV 2197 2 -
DGFIVGIHSASNFTNTNNYF Q88501 348 2 -
DGFIVGIHSASNFTNTNNYF Q88506 2197 2 -
DGFIVGIHSASNFTNTNNYF Q88507 2197 2 -
DGLIVGFHGLTSNDSNKNFF Q85057 2336 2 -
DGLIVGFHGLTSNDSNKNFF Q85071 2336 2 -
DGALLGVHSLSNLTNTQNFF O39734 2574 2 -
DGCIVGIHSLANNAHTTNYY POLG_PVYN 2191 2 -
DGHIVGIHGLTSNDSEKNFF POLG_SBMVG 2201 2 -
DGAILGIHSLSNMTNTSNYF Q85197 2191 2 -
DGCLVGIHSLANNVQTTNYY POLG_PVYHU 2191 2 -
DGCLVGIHSLANNVQTTNYY Q85265 2191 2 -
DGFILGLHSLANNRNSENYY POLG_PEMVC 2190 2 -
DGFIVGLHSLSTSTGDQNFF POLG_PRSVH 2440 2 -
DGAILGLHGLTSTKSDRNYF O56075 2217 2 -
DGFIVGIHSLTAISGDLNVF Q65852 2181 2 -
DGFIVGIHSLTAISGDLNVF Q65892 2181 2 -
DGYIVGLHSLSTSTGDQNFF P90213 2440 2 -
DGKIIGVHGLASTVSSKNYF POLG_ZYMVC 2201 2 -
DGKIIGIHGLASTVSSKNYF O36979 2204 2 -
DGYIVGIHGLTSNETSRNFF POLG_BCMVN 2205 2 -
DGHIVGIHNLGGENTNINYF POLG_PSBMV 2309 2 -
DGAILGIHSLTHTTNGSNYF Q88925 2161 2 -
DGYIVGIHSATSSRQTQNYH POLG_LMVE 2374 2 -
DGNILGIHSLTHTTNGSNYF POLG_TVMV 2143 2 -
DGNILGIHSLTHTTNGSNYF Q84898 2161 2 -
DGHIVGIHNLGGENTNINYF Q85074 2303 2 -
DGYIVGIHSATSSRQTQNYH POLG_LMV0 2374 2 -
DGFIVGIHSLASLTGDVNIF O92645 2199 2 -
TKEDVGIHSLKATNNSVNYF Q82933 2150 2 -
DGKLIGLHGKASTVSSKNYF POLG_ZYMVR 2204 2 -
TMDIIGLHSLGAQNSNENYF O89525 2158 2 -
TRSIVGVHSLASVNANVNFF O73463 2146 2 -
TMDIIGLHSLGAQNSNENYF O11436 2158 2 -