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PR00949

Identifier
TYPE3IMAPROT  [View Relations]  [View Alignment]  
Accession
PR00949
No. of Motifs
6
Creation Date
11-SEP-1998  (UPDATE 10-APR-2000)
Title
Type III secretion system inner membrane A protein family signature
Database References
Literature References
1. MECSAS, J. AND STRAUSS, E.J.
Molecular mechanisms of bacterial virulence: type III secretion and 
pathogenicity islands.
EMERG.INFECT.DIS. 2 271-288 (1996).
 
2. GALAN, J. AND COLLMER, A.
Type III secretion machines; bacterial devices for protein delivery into
host cells.
SCIENCE 284 1322-1328 (1999).
 
3. KOMORIYA, K., SHIBANO, N., HIGANO, T., AZUMA, N., YAMAGUCHI, S. AND 
AIZAWA, S.
Flagellar proteins and type III-exported virulence factors are the 
predominant proteins secreted into the culture media of Salmonella 
typhimurium.
MOL.MICROBIOL. 34 767-779 (1999).
 
4. HUECK, C.J.
Type III protein secretion systems in bacterial pathogens of animals and 
plants.
MICROBIOL.MOL.BIOL.REV. 379-433 (1998).

Documentation
Secretion of virulence factors in Gram-negative bacteria involves 
transportation of the protein across two membranes to reach the cell 
exterior [1]. There have been four secretion systems described in 
animal enteropathogens such as Salmonella and Yersinia, with further 
sequence similarities in plant pathogens like Ralstonia and Erwinia [1]. 
 
The type III secretion system is of great interest, as it is used to 
transport virulence factors from the pathogen directly into the host cell 
[2] and is only triggered when the bacterium comes into close contact with
the host. The protein subunits of the system are very similar to those of 
bacterial flagellar biosynthesis [3]. However, while the latter forms a
ring structure to allow secretion of flagellin and is an integral part of
the flagellum itself [3], type III subunits in the outer membrane
translocate secreted proteins through a channel-like structure.
 
It is believed that the family of type III inner membrane proteins are 
used as structural moieties in a complex with several other subunits [4]. 
One such set of inner membrane proteins, labeled "A" here for nomenclature 
purposes, includes the Salmonella InvA and Shigella MxiA, the Yersinia LcrD, 
Rhizobium Y4YR, and the Erwinia HrcI genes [4]. The flagellar protein FlhA 
also shares similarity, probably due to evolution of the Type III secretion 
system from the flagellar biosynthetic pathway. 
 
TYPE3IMAPROT is a 6-element fingerprint that provides a signature for the
type III secretion system inner membrane A protein family. The fingerprint
was derived from an initial alignment of 9 sequences: the motifs were drawn
from conserved regions spanning the full alignment length (~600 amino acids).
Two iterations on SPTR37_10f were required to reach convergence, at which 
point a true set comprising 35 sequences was identified. Two partial matches
were also found, both flagellar biosynthetic genes that failed to match one
or more N-terminal motifs. 
Summary Information
  35 codes involving  6 elements
1 codes involving 5 elements
1 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
6353535353535
5011111
4001111
3000000
2000000
123456
True Positives
FLHA_BACSU    FLHA_BORBU    FLHA_CAUCR    FLHA_ECOLI    
FLHA_HELPY FLHA_PROMI FLHA_SALTY FLHA_TREPA
FLHA_YEREN HRC2_XANCV HRPI_ERWAM HRPI_PSESY
HRPO_BURSO INVA_SALTY LCRD_YEREN LCRD_YERPE
MXIA_SHIFL O30436 O30536 O34019
O52139 O67265 O84092 O85633
O87956 Q47629 Q51875 Q56976
Q9Z5S8 Q9Z6F4 Q9Z8I0 Q9Z8L5
Q9ZM40 SSAV_SALTY Y4YR_RHISN
True Positive Partials
Codes involving 5 elements
O84063
Codes involving 4 elements
FHIA_ECOLI
Sequence Titles
FLHA_BACSU  FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - BACILLUS SUBTILIS. 
FLHA_BORBU FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
FLHA_CAUCR FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - CAULOBACTER CRESCENTUS.
FLHA_ECOLI FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - ESCHERICHIA COLI.
FLHA_HELPY FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
FLHA_PROMI FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - PROTEUS MIRABILIS.
FLHA_SALTY FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - SALMONELLA TYPHIMURIUM.
FLHA_TREPA FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - TREPONEMA PALLIDUM.
FLHA_YEREN FLAGELLAR BIOSYNTHESIS PROTEIN FLHA - YERSINIA ENTEROCOLITICA.
HRC2_XANCV HRPC2 PROTEIN - XANTHOMONAS CAMPESTRIS (PV. VESICATORIA).
HRPI_ERWAM HARPIN SECRETION PROTEIN HRPI - ERWINIA AMYLOVORA.
HRPI_PSESY HYPERSENSITIVITY RESPONSE SECRETION PROTEIN HRPI - PSEUDOMONAS SYRINGAE (PV. SYRINGAE).
HRPO_BURSO HYPERSENSITIVITY RESPONSE SECRETION PROTEIN HRPO - BURKHOLDERIA SOLANACEARUM (PSEUDOMONAS SOLANACEARUM).
INVA_SALTY INVASION PROTEIN INVA - SALMONELLA TYPHIMURIUM.
LCRD_YEREN LOW CALCIUM RESPONSE LOCUS PROTEIN D - YERSINIA ENTEROCOLITICA.
LCRD_YERPE LOW CALCIUM RESPONSE LOCUS PROTEIN D - YERSINIA PESTIS.
MXIA_SHIFL MXIA PROTEIN (VIRH PROTEIN) - SHIGELLA FLEXNERI, AND SHIGELLA SONNEI.
O30436 INNER MEMBRANE TRANSPORTER HOMOLOG - YERSINIA ENTEROCOLITICA.
O30536 PCRD - PSEUDOMONAS AERUGINOSA.
O34019 CDS2 PROTEIN - CHLAMYDIA PSITTACI.
O52139 ESCV - ESCHERICHIA COLI.
O67265 FLAGELLAR EXPORT PROTEIN - AQUIFEX AEOLICUS.
O84092 LOW CALCIUM RESPONSE D - CHLAMYDIA TRACHOMATIS.
O85633 L0035 - ESCHERICHIA COLI.
O87956 FLAGELLAR PROTEIN FLHA - ESCHERICHIA COLI.
Q47629 SEPA PROTEIN - ESCHERICHIA COLI.
Q51875 LOW CALCIUM RESPONSE PROTEIN - YERSINIA ENTEROCOLITICA.
Q56976 PLASMID LCRD - YERSINIA PSEUDOTUBERCULOSIS, AND YERSINIA PESTIS.
Q9Z5S8 FLAGELLAR BIOSYNTHESIS PROTEIN - ZYMOMONAS MOBILIS.
Q9Z6F4 POLAR FLAGELLAR ASSEMBLY PROTEIN - VIBRIO PARAHAEMOLYTICUS.
Q9Z8I0 FLAGELLAR SECRETION PROTEIN - CHLAMYDIA PNEUMONIAE.
Q9Z8L5 LOW CALCIUM RESPONSE D - CHLAMYDIA PNEUMONIAE.
Q9ZM40 FLAGELLAR BIOSYNTHESIS PROTEIN - HELICOBACTER PYLORI J99.
SSAV_SALTY SECRETION SYSTEM APPARATUS PROTEIN SSAV - SALMONELLA TYPHIMURIUM.
Y4YR_RHISN PROBABLE TRANSLOCATION PROTEIN Y4YR - RHIZOBIUM SP. (STRAIN NGR234).

O84063 FLAGELLAR SECRETION PROTEIN - CHLAMYDIA TRACHOMATIS.

FHIA_ECOLI FHIA PROTEIN - ESCHERICHIA COLI.
Scan History
SPTR37_10f 2  37   NSINGLE    
Initial Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
PLPTYLVDFLIALN INVA_SALTY 11 11 -
PLPPLVLDILIAVN LCRD_YEREN 34 34 -
PLPTYLVDFLIGLN MXIA_SHIFL 31 31 -
PLPTGLIDVLIALN HRPI_ERWAM 37 37 -
PLPTVVVDIIIAIN O52139 33 33 -
PLPTWMVDILITIN SSAV_SALTY 40 40 -
PFPPWLLSILIIIN FLHA_BACSU 22 22 -
PVPAPLLDVLLAIS FLHA_CAUCR 43 43 -
PIPVMAVDALIGFN Y4YR_RHISN 34 34 -

Motif 2 width=20
Element Seqn Id St Int Rpt
PAVLLITTLFRLALSISTSR INVA_SALTY 48 23 -
PAVLLVTTLFRLALSVSTTR LCRD_YEREN 71 23 -
PSVLLITTLFRLALSISTSR MXIA_SHIFL 68 23 -
PSVLLLTTMFRLALSISTTR HRPI_ERWAM 74 23 -
PTILLITTLMRLSLSVSTTR O52139 70 23 -
PSLLLITTLYRLSLTISTSR SSAV_SALTY 77 23 -
PSLLLLLTLFRLGLNVSTTR FLHA_BACSU 59 23 -
PTVLLVTTLFRLGLNIASTR FLHA_CAUCR 80 23 -
PGVILLSTVFRLALTVATTR Y4YR_RHISN 71 23 -

Motif 3 width=17
Element Seqn Id St Int Rpt
TKGSERVAEVAARFSLD INVA_SALTY 110 42 -
TKGSERVAEVSARFSLD LCRD_YEREN 133 42 -
TKGSERVAEVAARFSLD MXIA_SHIFL 130 42 -
TKGSERVAEVAARFTLD HRPI_ERWAM 136 42 -
TKGAERVAEVSARFSLD O52139 132 42 -
TKGIERVAEVSARFSLD SSAV_SALTY 139 42 -
TKGAERVSEVAARFTLD FLHA_BACSU 121 42 -
TKGSGRIAEVAARFTLD FLHA_CAUCR 147 47 -
AKGAERVAEVAARFTLD Y4YR_RHISN 133 42 -

Motif 4 width=19
Element Seqn Id St Int Rpt
PGKQMSIDADLKAGIIDAD INVA_SALTY 129 2 -
PGKQMSIDGDMRAGVIDVN LCRD_YEREN 152 2 -
PGKQMSIDADLKAGIIDAA MXIA_SHIFL 149 2 -
PGKQMSIDSDLRAGLIEAH HRPI_ERWAM 155 2 -
PGKQMSIDGDMRAGVIDPL O52139 151 2 -
PGKQMSIDGDLRAGVIDAD SSAV_SALTY 158 2 -
PGKQMSIDADLNAGMITEQ FLHA_BACSU 140 2 -
PGKQMAIDADLSTGLISQD FLHA_CAUCR 166 2 -
PGKQMAIDAELRNGHIDAD Y4YR_RHISN 152 2 -

Motif 5 width=18
Element Seqn Id St Int Rpt
ESQLYGSFDGAMKFIKGD INVA_SALTY 159 11 -
ESQMFGSMDGAMKFVKGD LCRD_YEREN 182 11 -
ESQLYGSFDGAMKFIKGD MXIA_SHIFL 179 11 -
ESQLFGAMDGAMKFVKGD HRPI_ERWAM 184 10 -
ESQFYGSMDGAMKFVKGD O52139 181 11 -
ESRFLGAMDGAMKFVKGD SSAV_SALTY 188 11 -
EADFYGAMDGASKFVKGD FLHA_BACSU 170 11 -
ESTFFGAMDGASKFVKGD FLHA_CAUCR 196 11 -
ESKLYGAMDGAMKFVKGD Y4YR_RHISN 182 11 -

Motif 6 width=15
Element Seqn Id St Int Rpt
YTMLTIGDGLVAQIP INVA_SALTY 210 33 -
YSILTVGDGMVSQVP LCRD_YEREN 233 33 -
YTILTIGDGLVSQIP MXIA_SHIFL 230 33 -
YSVLTIGDGLIAQIP HRPI_ERWAM 235 33 -
FSVLSVGDALVAQIP O52139 232 33 -
YSVLSIGDGLCGQIP SSAV_SALTY 239 33 -
FTMLTVGDGIVSQIP FLHA_BACSU 221 33 -
YTIMTIGDGLVSQIP FLHA_CAUCR 247 33 -
YTLLTIGDALISQIP Y4YR_RHISN 233 33 -
Final Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
PLPPFLLDLLFTFN FLHA_PROMI 38 38 -
PLPAFILDLLFTFN FLHA_ECOLI 38 38 -
PLPAFILDLLFTFN FLHA_SALTY 38 38 -
PLPAFILDLLFTFN O87956 38 38 -
PLPPLLLDILIAVN O30536 33 33 -
PLPTYLVDFLIALN INVA_SALTY 11 11 -
PLPPLVLDILIAVN LCRD_YEREN 34 34 -
PLPPLVLDILIAVN LCRD_YERPE 34 34 -
PLPPLVLDILIAVN Q51875 34 34 -
PLPPLVLDILIAVN Q56976 34 34 -
PLPTYLVDFLIGLN MXIA_SHIFL 31 31 -
PLPTILVDLLIGLN O30436 33 33 -
PLPPFILDLLFTFN FLHA_YEREN 38 38 -
PLPTGLIDVLIALN HRPI_ERWAM 37 37 -
PLPTVVVDIIIAIN O52139 33 33 -
PLPTVVVDIIIAIN O85633 33 33 -
PLPTVVVDIIIAIN Q47629 33 33 -
PLPPPIVDLMITIN Q9Z8L5 43 43 -
PLPPTIVDLMITIN O34019 43 43 -
PLPTGLIDVLIAVN HRPI_PSESY 37 37 -
PLPTWMVDILITIN SSAV_SALTY 40 40 -
PIPAFLLDMFFTFN Q9Z6F4 38 38 -
PLPPAMVDFMITIN O84092 43 43 -
PLPPFVLDFLLTIS FLHA_HELPY 42 42 -
PLPPFVLDFLLTIS Q9ZM40 42 42 -
PFPPWLLSILIIIN FLHA_BACSU 22 22 -
PVPAPLLDVLLAIS FLHA_CAUCR 43 43 -
PVPTAVLDIGFISN Q9Z5S8 34 34 -
PLPTMLIDALLGLN HRPO_BURSO 30 30 -
PIPVMAVDALIGFN Y4YR_RHISN 34 34 -
PLPTPMIDTLLGIN HRC2_XANCV 34 34 -
PIPALLLDLLLTLS O67265 22 22 -
PLPAVILDVLITVN FLHA_BORBU 37 37 -
PLPTQILDALMAFN FLHA_TREPA 29 29 -
PLPQILLDFGLCIS Q9Z8I0 25 25 -

Motif 2 width=20
Element Seqn Id St Int Rpt
PTILLFTTLLRLSLNVASTR FLHA_PROMI 75 23 -
PTILLFTTLLRLALNVASTR FLHA_ECOLI 75 23 -
PTILLFTTLLRLALNVASTR FLHA_SALTY 75 23 -
PTILLFTTLLRLALNVASTR O87956 75 23 -
PAVLLITTLFRLALSVSTTR O30536 70 23 -
PAVLLITTLFRLALSISTSR INVA_SALTY 48 23 -
PAVLLVTTLFRLALSVSTTR LCRD_YEREN 71 23 -
PAVLLVTTLFRLALSVSTTR LCRD_YERPE 71 23 -
PAVLLVTTLFRLALSVSTTR Q51875 71 23 -
PAVLLVTTLFRLALSVSTTR Q56976 71 23 -
PSVLLITTLFRLALSISTSR MXIA_SHIFL 68 23 -
PSILLITTLFRLALSISTSR O30436 70 23 -
PTILLFSTLLRLSLNVASTR FLHA_YEREN 75 23 -
PSVLLLTTMFRLALSISTTR HRPI_ERWAM 74 23 -
PTILLITTLMRLSLSVSTTR O52139 70 23 -
PTILLITTLMRLSLSVSTTR O85633 70 23 -
PTILLITTLMRLSLSVSTTR Q47629 70 23 -
PSLLLITTMFRLGINISSSR Q9Z8L5 80 23 -
PSLLLITTMFRLGINISSSR O34019 80 23 -
PAVLLLTTMFRLALSVSTTR HRPI_PSESY 74 23 -
PSLLLITTLYRLSLTISTSR SSAV_SALTY 77 23 -
PTVLLIATLLRLALNVASTR Q9Z6F4 75 23 -
PSLLLITTMFRLGINISSSR O84092 80 23 -
PTLLLIVTLYRLALNVATTR FLHA_HELPY 79 23 -
PTLLLIVTLYRLALNVATTR Q9ZM40 79 23 -
PSLLLLLTLFRLGLNVSTTR FLHA_BACSU 59 23 -
PTVLLVTTLFRLGLNIASTR FLHA_CAUCR 80 23 -
PTVLLFATLLRLSLNVASTR Q9Z5S8 71 23 -
PSLLLFTTLLRLSLNIASTK HRPO_BURSO 67 23 -
PGVILLSTVFRLALTVATTR Y4YR_RHISN 71 23 -
PSLLLFTTLLRLSLNIASTK HRC2_XANCV 71 23 -
PSVLLLGTLLRLSLNIAAAR O67265 59 23 -
PTLLLVMTIFGLVLNISSTR FLHA_BORBU 74 23 -
PSLLLTSTVFGLGLNVSSTR FLHA_TREPA 66 23 -
PPFFLYLCLLRLGLNLASTR Q9Z8I0 62 23 -

Motif 3 width=17
Element Seqn Id St Int Rpt
TKGAGRIAEVGARFVLD FLHA_PROMI 142 47 -
TKGAGRIAEVGARFVLD FLHA_ECOLI 142 47 -
TKGAGRIAEVGARFVLD FLHA_SALTY 142 47 -
TKGAGRIAEVGARFVLD O87956 142 47 -
TKGAERVAEVSARFSLD O30536 132 42 -
TKGSERVAEVAARFSLD INVA_SALTY 110 42 -
TKGSERVAEVSARFSLD LCRD_YEREN 133 42 -
TKGSERVAEVSARFSLD LCRD_YERPE 133 42 -
TKGSERVAEVSARFSLD Q51875 133 42 -
TKGSERVAEVSARFSLD Q56976 133 42 -
TKGSERVAEVAARFSLD MXIA_SHIFL 130 42 -
TKGSERIAEVAARFSLD O30436 132 42 -
TKGAGRIAEVGARFVLD FLHA_YEREN 142 47 -
TKGSERVAEVAARFTLD HRPI_ERWAM 136 42 -
TKGAERVAEVSARFSLD O52139 132 42 -
TKGAERVAEVSARFSLD O85633 132 42 -
TKGAERVAEVSARFSLD Q47629 132 42 -
TKGAERVAEVAARFRLD Q9Z8L5 142 42 -
TKGAERVAEVAARFRLD O34019 142 42 -
TKGSERVAEVGARFTLD HRPI_PSESY 136 42 -
TKGIERVAEVSARFSLD SSAV_SALTY 139 42 -
TKGAGRISEVSARFTLD Q9Z6F4 142 47 -
TKGAERVAEVAARFRLD O84092 142 42 -
TNGSTRVTEVRARFALD FLHA_HELPY 146 47 -
TNGSTRVTEVRARFALD Q9ZM40 146 47 -
TKGAERVSEVAARFTLD FLHA_BACSU 121 42 -
TKGSGRIAEVAARFTLD FLHA_CAUCR 147 47 -
TKGAGRVSEVSARFTLD Q9Z5S8 138 47 -
AKGSERVAEVGARFTLD HRPO_BURSO 129 42 -
AKGAERVAEVAARFTLD Y4YR_RHISN 133 42 -
AKGSERVAEVGARFTLD HRC2_XANCV 133 42 -
TKGAERISEVAARFTLD O67265 126 47 -
TKGATRVAEVAARFALD FLHA_BORBU 142 48 -
TKGATRIAEVAARFTLD FLHA_TREPA 134 48 -
SKGSERIAEVRSRFFLE Q9Z8I0 124 42 -

Motif 4 width=19
Element Seqn Id St Int Rpt
PGKQMAIDADLNAGIINEE FLHA_PROMI 161 2 -
PGKQMAIDADLNAGLIGED FLHA_ECOLI 161 2 -
PGKQMAIDADLNAGLIGED FLHA_SALTY 161 2 -
PGKQMAIDADLNAGLIGED O87956 161 2 -
PGKQMSIDGDMRAGVIDVN O30536 151 2 -
PGKQMSIDADLKAGIIDAD INVA_SALTY 129 2 -
PGKQMSIDGDMRAGVIDVN LCRD_YEREN 152 2 -
PGKQMSIDGDMRAGVIDVN LCRD_YERPE 152 2 -
PGKQMSIDGDMRAGVIDVN Q51875 152 2 -
PGKQMSIDGDMRAGVIDVN Q56976 152 2 -
PGKQMSIDADLKAGIIDAA MXIA_SHIFL 149 2 -
PGKQMSIDADLRAGVIDEA O30436 151 2 -
PGKQMAIDADLNAGLIGED FLHA_YEREN 161 2 -
PGKQMSIDSDLRAGLIEAH HRPI_ERWAM 155 2 -
PGKQMSIDGDMRAGVIDPL O52139 151 2 -
PGKQMSIDGDMRAGVIDPL O85633 151 2 -
PGKQMSIDGDMRAGVIDPL Q47629 151 2 -
PGKQMAIDADLRAGMIDAT Q9Z8L5 161 2 -
PGKQMAIDADLRAGMIDAQ O34019 161 2 -
PGKQMSIDSDLRANLITVH HRPI_PSESY 155 2 -
PGKQMSIDGDLRAGVIDAD SSAV_SALTY 158 2 -
PGKQMAIDADLNAGLIDQE Q9Z6F4 161 2 -
PGKQMAIDADLRAGMIDAT O84092 161 2 -
PGKQMAIDADLNSGLIDDK FLHA_HELPY 165 2 -
PGKQMAIDADLNSGLIDDK Q9ZM40 165 2 -
PGKQMSIDADLNAGMITEQ FLHA_BACSU 140 2 -
PGKQMAIDADLSTGLISQD FLHA_CAUCR 166 2 -
PGKQMAIDADLNAGLITPE Q9Z5S8 157 2 -
PGKQMSIDADLRAGHLSPE HRPO_BURSO 148 2 -
PGKQMAIDAELRNGHIDAD Y4YR_RHISN 152 2 -
PGKQMSIDADLRGGNLTAD HRC2_XANCV 152 2 -
PGKQMSIDADLNAGLITEE O67265 145 2 -
PGKQMAIDSAYSSGNLTEE FLHA_BORBU 161 2 -
ATKSMSIDAEYNAGVITEE FLHA_TREPA 153 2 -
PAKQMALDSDLVSGRASYK Q9Z8I0 143 2 -

Motif 5 width=18
Element Seqn Id St Int Rpt
ESDFYGSMDGASKFVRGD FLHA_PROMI 191 11 -
EADFYGSMDGASKFVRGD FLHA_ECOLI 191 11 -
EADFYGSMDGASKFVRGD FLHA_SALTY 191 11 -
EADFYGSMDGASKFVRGD O87956 191 11 -
ESQMFGSMDGAMKFVKGD O30536 181 11 -
ESQLYGSFDGAMKFIKGD INVA_SALTY 159 11 -
ESQMFGSMDGAMKFVKGD LCRD_YEREN 182 11 -
ESQMFGSMDGAMKFVKGD LCRD_YERPE 182 11 -
ESQMFGSMDGAMKFVKGD Q51875 182 11 -
ESQMFGSMDGAMKFVKGD Q56976 182 11 -
ESQLYGSFDGAMKFIKGD MXIA_SHIFL 179 11 -
ESQLYGSFDGAMKFIKGD O30436 181 11 -
EADFYGSMDGASKFVRGD FLHA_YEREN 191 11 -
ESQLFGAMDGAMKFVKGD HRPI_ERWAM 184 10 -
ESQFYGSMDGAMKFVKGD O52139 181 11 -
ESQFYGSMDGAMKFVKGD O85633 181 11 -
ESQFYGSMDGAMKFVKGD Q47629 181 11 -
ESELYGAMDGAMKFIKGD Q9Z8L5 191 11 -
ESELYGAMDGAMKFIKGD O34019 191 11 -
ESQLFGAMDGAMKFVNGD HRPI_PSESY 185 11 -
ESRFLGAMDGAMKFVKGD SSAV_SALTY 188 11 -
EADFYGSMDGASKFVKGD Q9Z6F4 191 11 -
ESELYGAMDGAMKFIKGD O84092 191 11 -
EADFYGAMDGASKFVKGD FLHA_HELPY 195 11 -
EADFYGAMDGASKFVKGD Q9ZM40 195 11 -
EADFYGAMDGASKFVKGD FLHA_BACSU 170 11 -
ESTFFGAMDGASKFVKGD FLHA_CAUCR 196 11 -
EAGFYGSMDGASKFVKGD Q9Z5S8 187 11 -
ESQLHGGMDGAMKFVKGD HRPO_BURSO 178 11 -
ESKLYGAMDGAMKFVKGD Y4YR_RHISN 182 11 -
ESQLHGGMDGAMKFVKGD HRC2_XANCV 182 11 -
EANFYAAMDGASKFIRGD O67265 175 11 -
EVNFYGAMDGASKFVSGN FLHA_BORBU 191 11 -
EADFFGAMDGASKFVSGN FLHA_TREPA 183 11 -
EGDFFSAMEGVFRFVKGD Q9Z8I0 173 11 -

Motif 6 width=15
Element Seqn Id St Int Rpt
YTLLTIGDGLVAQIP FLHA_PROMI 242 33 -
YTLLTIGDGLVAQIP FLHA_ECOLI 242 33 -
YTLLTIGDGLVAQIP FLHA_SALTY 242 33 -
YTLLTIGDGLVAQIP O87956 242 33 -
YAVLTVGDGMVSQVP O30536 232 33 -
YTMLTIGDGLVAQIP INVA_SALTY 210 33 -
YSILTVGDGMVSQVP LCRD_YEREN 233 33 -
YSILTVGDGMVSQVP LCRD_YERPE 233 33 -
YSILTVGDGMVSQVP Q51875 233 33 -
YSILTVGDGMVSQVP Q56976 233 33 -
YTILTIGDGLVSQIP MXIA_SHIFL 230 33 -
FTLLTIGDGLVAQIP O30436 232 33 -
YTLLTIGDGLVAQIP FLHA_YEREN 242 33 -
YSVLTIGDGLIAQIP HRPI_ERWAM 235 33 -
FSVLSVGDALVAQIP O52139 232 33 -
FSVLSVGDALVAQIP O85633 232 33 -
FSVLSVGDALVAQIP Q47629 232 33 -
YTLLSIGDGLVSQIP Q9Z8L5 242 33 -
YTLLSIGDGLVSQIP O34019 242 33 -
YTVLTIGDGLIAQIP HRPI_PSESY 236 33 -
YSVLSIGDGLCGQIP SSAV_SALTY 239 33 -
YTLLTIGDGLVAQIP Q9Z6F4 242 33 -
YTLITIGDGLVSQIP O84092 242 33 -
FTILTIGDGLVGQIP FLHA_HELPY 246 33 -
FTILTIGDGLVGQIP Q9ZM40 246 33 -
FTMLTVGDGIVSQIP FLHA_BACSU 221 33 -
YTIMTIGDGLVSQIP FLHA_CAUCR 247 33 -
YVQLAIGDALVAQIP Q9Z5S8 238 33 -
FAVLSIGDAMVSQIP HRPO_BURSO 229 33 -
YTLLTIGDALISQIP Y4YR_RHISN 233 33 -
FAILSVGDAMVSQIA HRC2_XANCV 233 33 -
YTILSIGEGLASQVP O67265 226 33 -
YVSLTVGDGLVSQLP FLHA_BORBU 242 33 -
YTNLTIGDGLLAQLP FLHA_TREPA 234 33 -
MWFTVLGDALVSQVP Q9Z8I0 219 28 -