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PR00939

Identifier
C2HCZNFINGER  [View Relations]  [View Alignment]  
Accession
PR00939
No. of Motifs
2
Creation Date
19-AUG-1998  (UPDATE 23-JUN-1999)
Title
C2HC-type zinc-finger signature
Database References

PFAM; PF00098 zf-CCHC
INTERPRO; IPR001878
PDB; 1AAF
SCOP; 1AAF
CATH; 1AAF
Literature References
1. KLUG, A. AND  RHODES, D.
TRENDS BIOCHEM.SCI. 12 464-469 (1987).
 
2. GIBSON, T.J., POSTMA, J.P.M., BROWN, R.S. AND ARGOS, P.
A model for the tertiary structure of the 28 residue DNA-binding motif
proteins.
PROTEIN ENG. 2 209-218 (1988).
 
3. EVANS, R.M. AND HOLLENBERG, S.M.
Zinc fingers: Gilt by association.
CELL 52 1-3 (1988).
 
4. ONO, Y., FUJII, T., IGARASHI, K., TANAKA, C., KIKKAWA, U. 
AND NISHIZUKA, Y. 
Phorbol ester binding to protein kinase C requires a cysteine
zinc-finger-like sequence.
PROC.NATL.ACAD.SCI.U.S.A. 86 4868-4871 (1989).

Documentation
The zinc finger motif is an unusually small, self-folding domain in which 
Zn is a crucial component of its tertiary structure: fingers bind 1 atom of
Zn in a tetrahedral array to yield a finger-like projection, which interacts
with nucleotides in the major groove of the nucleic acid - the Zn binds to 
conserved Cys and His residues. Fingers have been found to bind to about 5
base pairs of nucleic acid containing short runs of guanine residues. They 
are found in all transcription factors, and also proteins such as RNA and 
DNA polymerases. This ability to bind to both RNA and DNA suggests 
versatility not demonstrated by the helix-turn-helix motif: the zinc finger
may thus represent the original nucleic acid binding protein. It has also 
been suggested that a Zn-centred domain could be used in a protein
interaction, e.g. in protein kinase C.
 
The zinc finger motif was first discovered in the Xenopus laevis 
transcription factor IIIA, and has since been found to be ubiquitous in 
transcription factors and other DNA-binding proteins. Putative fingers are 
present in the structure of many regulatory proteins, acting as specific 
nucleic acid binding domains. The motif contains ~20 amino acid residues,
including conserved Cys and His residues. Zinc fingers bind zinc via a 
number of different motifs, including a C2H2 repeat, a C4 motif (e.g., in
the hormone-regulated proteins), and a C2HC motif.
 
C2HCZNFINGER is a 2-element fingerprint that provides a signature for
C2HC-type zinc fingers. The fingerprint was derived from an initial
alignment of 35 sequences: the motifs span the complete zinc finger region.
Five iterations on OWL30.2 were required to reach convergence, at which
point a true set comprising 781 sequences was identified. It is possible
that many more matches to the fingerprint exist, but our cut-offs were
conservative in order to avoid inclusion of false positives.
 
An update on SPTR37_9f identified a true set of 403 sequences.
Summary Information
403 codes involving  2 elements
Composite Feature Index
2403403
12
True Positives
BYR3_SCHPO    CNBP_HUMAN    CNBP_MOUSE    COAT_CAMVC    
COAT_CAMVD COAT_CAMVN COAT_CAMVS COAT_CERV
COAT_FMVD COAT_SOCMV COPI_DROME GAG2_HUMAN
GAG_BIV06 GAG_BIV27 GAG_BLVAU GAG_BLVJ
GAG_CAEVC GAG_EIAVY GAG_FIVPE GAG_FIVSD
GAG_FIVT2 GAG_FIVWO GAG_HTL1A GAG_HTL1C
GAG_HTL1M GAG_HTLV2 GAG_HV1A2 GAG_HV1B1
GAG_HV1B5 GAG_HV1BR GAG_HV1C4 GAG_HV1EL
GAG_HV1H2 GAG_HV1J3 GAG_HV1JR GAG_HV1LW
GAG_HV1MA GAG_HV1MN GAG_HV1N5 GAG_HV1ND
GAG_HV1OY GAG_HV1PV GAG_HV1RH GAG_HV1U4
GAG_HV1Y2 GAG_HV1Z2 GAG_HV2BE GAG_HV2CA
GAG_HV2D1 GAG_HV2D2 GAG_HV2G1 GAG_HV2KR
GAG_HV2NZ GAG_HV2RO GAG_HV2SB GAG_HV2ST
GAG_IPHA GAG_IPMA GAG_JSRV GAG_MMTVB
GAG_MMTVC GAG_MPMV GAG_OMVVS GAG_RSVP
GAG_SIVA1 GAG_SIVAG GAG_SIVAI GAG_SIVAT
GAG_SIVCZ GAG_SIVM1 GAG_SIVMK GAG_SIVMS
GAG_SIVS4 GAG_SIVSP GAG_SRV1 GAG_SRV2
GAG_VILV GAG_VILV1 GAG_VILV2 GAG_VILVK
GLH1_CAEEL GRP2_NICSY HEXP_LEIMA O01418
O01836 O02916 O04544 O04549
O08752 O08817 O12157 O12272
O17342 O17451 O19137 O22271
O22452 O23080 O23302 O23411
O23450 O23588 O23645 O23646
O23864 O24586 O40215 O41288
O41782 O41783 O41791 O41792
O41911 O42039 O42395 O44758
O46363 O48811 O48829 O49671
O56220 O56224 O56225 O56227
O56228 O56229 O56621 O57058
O57348 O65223 O65639 O70157
O70641 O71261 O71271 O71965
O71970 O72700 O74555 O76571
O76743 O77233 O80791 O80793
O81126 O81127 O81453 O81617
O81903 O82196 O82331 O82607
O89290 O89291 O89926 O89933
O89939 O89958 O89962 O90056
O90064 O90072 O90081 O90090
O90098 O90157 O90158 O90172
O90272 O90288 O90316 O91079
O91080 O92294 O92651 O92652
O92804 O92805 O92810 O92811
O92812 O92815 O92878 O92879
O92883 O92884 O92888 O92891
O92892 O92894 O92897 O92898
O92900 O92901 O92954 O93020
O93085 O93112 O93182 O93215
O93283 P70000 P87889 P88141
P88150 P89153 P89686 P89692
P89903 P89971 P90071 P90072
P90073 P90239 P90248 P90255
P90256 P90257 P90258 P90259
P90606 P91223 P91422 P91581
POLX_TOBAC POL_COYMV POST_XENLA Q00833
Q03259 Q03728 Q03852 Q03853
Q03858 Q03859 Q04134 Q07386
Q08461 Q08833 Q12173 Q12186
Q12476 Q14818 Q14819 Q15637
Q15913 Q17051 Q17329 Q18244
Q19336 Q21278 Q22873 Q23698
Q24081 Q24262 Q24280 Q24310
Q24585 Q26105 Q26692 Q27376
Q38896 Q41188 Q42412 Q60505
Q61213 Q61577 Q64033 Q64213
Q64983 Q64992 Q64996 Q65590
Q66161 Q66233 Q66275 Q66283
Q66932 Q66963 Q66971 Q69385
Q71812 Q72489 Q72497 Q72596
Q72604 Q72978 Q72986 Q73329
Q73367 Q74084 Q74230 Q74452
Q74806 Q74834 Q75001 Q75754
Q76621 Q76633 Q77372 Q77602
Q77603 Q77690 Q77697 Q77698
Q77699 Q77700 Q77804 Q77805
Q78240 Q78565 Q78566 Q79350
Q79351 Q79354 Q79356 Q79360
Q79361 Q79362 Q79448 Q79449
Q79450 Q79451 Q79665 Q79791
Q79898 Q79899 Q80181 Q80193
Q80306 Q80307 Q80363 Q80364
Q80365 Q80366 Q80621 Q80622
Q80623 Q80624 Q80625 Q80626
Q80628 Q80629 Q80630 Q80631
Q80632 Q80634 Q82230 Q82322
Q82343 Q82440 Q82850 Q82851
Q83009 Q83131 Q83168 Q83391
Q84681 Q84808 Q85490 Q85612
Q85613 Q86830 Q87107 Q87621
Q87705 Q87763 Q87955 Q87964
Q88000 Q88001 Q88003 Q88015
Q88092 Q88098 Q88134 Q88142
Q88284 Q88285 Q88937 Q89464
Q89810 Q90041 Q91591 Q91594
Q92744 Q92745 Q94821 Q94885
Q94901 Q96897 Q97058 Q98881
Q99219 Q99315 SFR7_HUMAN SLU7_YEAST
TOP3_HUMAN Y1R1_DROME YEW7_YEAST YIH9_YEAST
YNZ5_YEAST YRD6_CAEEL YTX1_XENLA
Sequence Titles
BYR3_SCHPO  CELLULAR NUCLEIC ACID BINDING PROTEIN HOMOLOG - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST). 
CNBP_HUMAN CELLULAR NUCLEIC ACID BINDING PROTEIN (CNBP) - HOMO SAPIENS (HUMAN), AND RATTUS NORVEGICUS (RAT).
CNBP_MOUSE CELLULAR NUCLEIC ACID BINDING PROTEIN (CNBP) - MUS MUSCULUS (MOUSE).
COAT_CAMVC COAT PROTEIN - CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) (CAMV).
COAT_CAMVD COAT PROTEIN - CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) (CAMV).
COAT_CAMVN COAT PROTEIN - CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) (CAMV).
COAT_CAMVS COAT PROTEIN - CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) (CAMV).
COAT_CERV PROBABLE COAT PROTEIN - CARNATION ETCHED RING VIRUS (CERV).
COAT_FMVD PROBABLE COAT PROTEIN - FIGWORT MOSAIC VIRUS (STRAIN DXS) (FMV).
COAT_SOCMV COAT PROTEIN - SOYBEAN CHLOROTIC MOTTLE VIRUS.
COPI_DROME COPIA PROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
GAG2_HUMAN RETROVIRUS-RELATED GAG POLYPROTEIN (VERSION 2) - HOMO SAPIENS (HUMAN).
GAG_BIV06 GAG POLYPROTEIN (P53) [CONTAINS: CORE PROTEINS P17, P26, P14] - BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) (BIV).
GAG_BIV27 GAG POLYPROTEIN (P53) [CONTAINS: CORE PROTEINS P17, P26, P14] - BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV).
GAG_BLVAU GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15 (MATRIX PROTEIN); CORE PROTEINS P24, P12] - BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) (BLV).
GAG_BLVJ GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15 (MATRIX PROTEIN); CORE PROTEINS P24, P12] - BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) (BLV).
GAG_CAEVC GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P14, P16, P25] - CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) (CAEV).
GAG_EIAVY GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15; MAJOR CORE PROTEIN P26 (CAPSID PROTEIN P26); CORE PROTEIN P11; CORE PROTEIN P9] - EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) (EIAV), AND EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) (EIAV).
GAG_FIVPE GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15; MAJOR CORE PROTEIN P24; NUCLEIC ACID BINDING PROTEIN P10] - FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) (FIV).
GAG_FIVSD GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15; MAJOR CORE PROTEIN P24; NUCLEIC ACID BINDING PROTEIN P10] - FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO) (FIV).
GAG_FIVT2 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15; MAJOR CORE PROTEIN P24; NUCLEIC ACID BINDING PROTEIN P10] - FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2) (FIV).
GAG_FIVWO GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15; MAJOR CORE PROTEIN P24; NUCLEIC ACID BINDING PROTEIN P10] - FELINE IMMUNODEFICIENCY VIRUS (ISOLATE WO) (FIV).
GAG_HTL1A GAG POLYPROTEIN [CONTAINS: MAJOR CORE PROTEINS P19 AND P24; NUCLEIC ACID-BINDING PROTEIN P15] - HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATK) (HTLV-I).
GAG_HTL1C GAG POLYPROTEIN [CONTAINS: MAJOR CORE PROTEINS P19 AND P24; NUCLEIC ACID-BINDING PROTEIN P15] - HUMAN T-CELL LEUKEMIA VIRUS TYPE I (CARIBBEAN ISOLATE) (HTLV-I).
GAG_HTL1M GAG POLYPROTEIN [CONTAINS: MAJOR CORE PROTEINS P19 AND P24; NUCLEIC ACID-BINDING PROTEIN P15] - HUMAN T-CELL LEUKEMIA VIRUS TYPE I (ISOLATE MT-2) (HTLV-I).
GAG_HTLV2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P15, P24 AND P12] - HUMAN T-CELL LEUKEMIA VIRUS TYPE II (HTLV-II).
GAG_HV1A2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE) (HIV-1).
GAG_HV1B1 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) (HIV-1).
GAG_HV1B5 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) (HIV-1).
GAG_HV1BR GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) (HIV-1).
GAG_HV1C4 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE) (HIV-1).
GAG_HV1EL GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) (HIV-1).
GAG_HV1H2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) (HIV-1).
GAG_HV1J3 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) (HIV-1).
GAG_HV1JR GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) (HIV-1).
GAG_HV1LW GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (LW12.3 ISOLATE) (HIV-1).
GAG_HV1MA GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) (HIV-1).
GAG_HV1MN GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) (HIV-1).
GAG_HV1N5 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 ISOLATE) (HIV-1).
GAG_HV1ND GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) (HIV-1).
GAG_HV1OY GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) (HIV-1).
GAG_HV1PV GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) (HIV-1).
GAG_HV1RH GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) (HIV-1).
GAG_HV1U4 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN UGANDAN / ISOLATE U455) (HIV-1).
GAG_HV1Y2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (YU-2 ISOLATE) (HIV-1).
GAG_HV1Z2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 ISOLATE) (HIV-1).
GAG_HV2BE GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) (HIV-2).
GAG_HV2CA GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) (HIV-2).
GAG_HV2D1 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) (HIV-2).
GAG_HV2D2 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) (HIV-2).
GAG_HV2G1 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE GHANA-1) (HIV-2).
GAG_HV2KR GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE KR) (HIV-2).
GAG_HV2NZ GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) (HIV-2).
GAG_HV2RO GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) (HIV-2).
GAG_HV2SB GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) (HIV-2).
GAG_HV2ST GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) (HIV-2).
GAG_IPHA RETROVIRUS-RELATED GAG POLYPROTEIN - HAMSTER INTRACISTERNAL A-PARTICLE (IAP-H18).
GAG_IPMA RETROVIRUS-RELATED GAG POLYPROTEIN [CONTAINS: PROTEASE (EC 3.4.23.-)] - MOUSE INTRACISTERNAL A-PARTICLE (IAP-MIA14).
GAG_JSRV GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P10, P18, P12, P27, P14, P4] - SHEEP PULMONARY ADENOMATOSIS VIRUS (JAAGSIEKTE SHEEP RETROVIRUS) (JSRV).
GAG_MMTVB GAG POLYPROTEIN [CONTAINS: PROTEINS P10, P8, AND P3; PHOSPHORYLATED PROTEIN PP20; MAJOR CORE PROTEIN P27; NUCLEIC ACID BINDING PROTEIN P14] - MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6).
GAG_MMTVC GAG POLYPROTEIN [CONTAINS: PROTEINS P10, P8, AND P3; PHOSPHORYLATED PROTEIN PP20; MAJOR CORE PROTEIN P27; NUCLEIC ACID BINDING PROTEIN P14] - MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H).
GAG_MPMV GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P10, PP24, P12, P27, P14, P4] - SIMIAN MASON-PFIZER VIRUS (MPMV).
GAG_OMVVS GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P16, P25, P14] - OVINE LENTIVIRUS (STRAIN SA-OMVV).
GAG_RSVP GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P19, P2A, P2B, P10; CAPSID PROTEIN P27; INNER COAT PROTEIN P12; PROTEASE P15 (EC 3.4.23.-)] - ROUS SARCOMA VIRUS (STRAIN PRAGUE C).
GAG_SIVA1 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) (SIV-AGM).
GAG_SIVAG GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) (SIV-AGM).
GAG_SIVAI GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM / CLONE GRI-1) (SIV-AGM).
GAG_SIVAT GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) (SIV-AGM).
GAG_SIVCZ GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P18, P25, AND P16] - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
GAG_SIVM1 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) (SIV-MAC).
GAG_SIVMK GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) (SIV-MAC).
GAG_SIVMS GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (STM ISOLATE) (SIV-MAC).
GAG_SIVS4 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) (SOOTY MANGABEY).
GAG_SIVSP GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (PBJ14/BCL-3 ISOLATE) (SOOTY MANGABEY).
GAG_SRV1 GAG POLYPROTEIN (CORE POLYPROTEIN) [CONTAINS: CORE PROTEINS P4, P10, P12, P14, P27; CORE PHOSPHOPROTEIN P18] - SIMIAN RETROVIRUS SRV-1.
GAG_SRV2 GAG POLYPROTEIN (CORE POLYPROTEIN) [CONTAINS: CORE PROTEINS P4, P10, P12, P14, P27; CORE PHOSPHOPROTEIN P18] - SIMIAN RETROVIRUS SRV-2.
GAG_VILV GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P16, P25, P14] - VISNA LENTIVIRUS (STRAIN 1514).
GAG_VILV1 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P16, P25, P14] - VISNA LENTIVIRUS (STRAIN 1514 / CLONE LV1-1KS1).
GAG_VILV2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P16, P25, P14] - VISNA LENTIVIRUS (STRAIN 1514 / CLONE LV1-1KS2).
GAG_VILVK GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P16, P25, P14] - VISNA LENTIVIRUS (STRAIN KV1772).
GLH1_CAEEL ATP-DEPENDENT RNA HELICASE GLH-1 - CAENORHABDITIS ELEGANS.
GRP2_NICSY GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 2 PRECURSOR - NICOTIANA SYLVESTRIS (WOOD TOBACCO).
HEXP_LEIMA DNA-BINDING PROTEIN HEXBP (HEXAMER-BINDING PROTEIN) - LEISHMANIA MAJOR.
O01418 GAG PROTEIN - BOMBYX MORI (SILK MOTH).
O01836 SIMILARITY TO THE 'DEAD' BOX FAMILY OF HELICASES - CAENORHABDITIS ELEGANS.
O02916 HLARK - HOMO SAPIENS (HUMAN).
O04544 ESTS GB|R29947 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O04549 T7N9.2 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O08752 RNA BINDING MOTIF PROTEIN 4 (MLARK) - MUS MUSCULUS (MOUSE).
O08817 CW17 GENE - MUS MUSCULUS (MOUSE).
O12157 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O12272 COMPLETE PROVIRAL GENOME - SIMIAN T-CELL LYMPHOTROPIC VIRUS.
O17342 T23E7.1 PROTEIN - CAENORHABDITIS ELEGANS.
O17451 GAG-LIKE PROTEIN - CULEX PIPIENS (HOUSE MOSQUITO).
O19137 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 KDA SUBUNIT - BOS TAURUS (BOVINE).
O22271 PUTATIVE MUDRA-LIKE RETROTRANSPOSON-ASSOCIATED PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O22452 PROTEASE/REVERSE TRANSCRIPTASE - VOLVOX CARTERI.
O23080 SIMILARITY TO GAG PROTEINS - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23302 RETROVIRUS-RELATED POLYPROTEIN HOMOLOG - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23411 HYPOTHETICAL PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23450 SIMILAR TO B.VULGARIS CMS-ASSOCIATED MITOCHONDRIAL - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23588 LTR RETROTRANSPOSON - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23645 RSZP21 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23646 RSZP22 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O23864 POLYPROTEIN - ORYZA AUSTRALIENSIS.
O24586 GAG PROTEIN - ZEA MAYS (MAIZE).
O40215 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41288 GAG PROTEIN - SIMIAN TYPE D VIRUS 1.
O41782 GAG-POL FUSION - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41783 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41791 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41792 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41911 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O42039 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O42395 CELLULAR NUCLEIC ACID BINDING PROTEIN - GALLUS GALLUS (CHICKEN).
O44758 T12F5.3 PROTEIN - CAENORHABDITIS ELEGANS.
O46363 UNIVERSAL MINICIRCLE SEQUENCE BINDING PROTEIN - CRITHIDIA FASCICULATA.
O48811 F24O1.20 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O48829 PUTATIVE GLYCINE-RICH, ZINC-FINGER DNA-BINDING PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O49671 REPLICATION A PROTEIN-LIKE - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O56220 PR160 - MOUSE MAMMARY TUMOR VIRUS.
O56224 PR180 - SIMIAN MASON-PFIZER VIRUS (MPMV).
O56225 PR78 - SIMIAN MASON-PFIZER VIRUS (MPMV).
O56227 PR GAG-PRO - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
O56228 PR GAG-PRO-POL - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
O56229 PR55 - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
O56621 GAG PROTEIN - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
O57058 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O57348 CELLULAR NUCLEIC ACID BINDING PROTEIN - GALLUS GALLUS (CHICKEN).
O65223 F7N22.6 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O65639 GLYCINE-RICH PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O70157 DNA TOPOISOMERASE I (EC 5.99.1.2) (OMEGA-PROTEIN) (RELAXING ENZYME) (UNTWISTING ENZYME) (SWIVELASE) - MUS MUSCULUS (MOUSE).
O70641 GAG-PRO-POL POLYPROTEIN - SIMIAN T-CELL LYMPHOTROPIC VIRUS TYPE 2.
O71261 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O71271 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O71965 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O71970 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O72700 POLYPROTEIN, CLEAVAGE PRODUCTS INCLUDE VIRAL COAT PROTEIN AND PROTEINS WITH HOMOLOGY TO AN ASPARTIC PROTEASE, REVERSE TRANSCRIPTASE AND RNASE H - BANANA STREAK VIRUS.
O74555 PUTATIVE TRANSCRIPTION OR SPLICING FACTOR - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST).
O76571 F54G2.2 PROTEIN - CAENORHABDITIS ELEGANS.
O76743 GERMLINE RNA HELICASE-4 - CAENORHABDITIS ELEGANS.
O77233 POLY-ZINC FINGER PROTEIN - TRYPANOSOMA CRUZI.
O80791 T12J2.6 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O80793 T12J2.8 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O81126 9G8-LIKE SR PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O81127 SRZ-80 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O81453 T27D20.19 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O81617 F8M12.17 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O81903 PUTATIVE TRANSPOSABLE ELEMENT - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O82196 PUTATIVE COPIA-LIKE TRANSPOSABLE ELEMENT - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O82331 PUTATIVE REVERSE TRANSCRIPTASE - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O82607 T2L5.9 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O89290 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89291 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89926 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89933 TRUNCATED GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89939 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89958 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89962 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90056 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90064 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90072 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90081 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90090 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90098 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90157 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90158 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90172 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90272 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O90288 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90316 GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O91079 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O91080 GAG-POL FUSION POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92294 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92651 GAG-POL POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92652 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92804 PR110 - MOUSE MAMMARY TUMOR VIRUS.
O92805 PR180 POLYPROTEIN PRECURSOR - ROUS SARCOMA VIRUS.
O92810 PR95 - SIMIAN MASON-PFIZER VIRUS (MPMV).
O92811 PR44 - BOVINE LEUKEMIA VIRUS (BLV).
O92812 PR145 - BOVINE LEUKEMIA VIRUS (BLV).
O92815 PR GAG-PRO-POL - WALLEYE DERMAL SARCOMA VIRUS.
O92878 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92879 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92883 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92884 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92888 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92891 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92892 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92894 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92897 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92898 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92900 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92901 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92954 STRUCTURAL POLYPROTEIN - ROUS SARCOMA VIRUS.
O93020 GAG POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93085 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93112 CORE PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93182 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93215 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93283 GAG POLYPROTEIN - FUGU RUBRIPES (JAPANESE PUFFERFISH) (TAKIFUGU RUBRIPES).
P70000 CELLULAR NUCLEIC ACID BINDING PROTEIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
P87889 GAG PROTEIN - HUMAN ENDOGENOUS RETROVIRUS K.
P88141 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
P88150 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P89153 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
P89686 GAG POLYPROTEIN - FELINE IMMUNODEFICIENCY VIRUS.
P89692 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P89903 FROM AFRICAN GREEN MONKEY, TANTALUS SPECIES (SIVTAN) PROVIRAL DNA, COMPLETE GENOME - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
P89971 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90071 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90072 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90073 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90239 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90248 GAG-POL POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90255 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90256 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90257 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90258 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90259 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90606 NUCLEIC ACID BINDING PROTEIN - TRYPANOSOMA EQUIPERDUM.
P91223 SIMILARITY TO C2H2-TYPE ZINC FINGERS - CAENORHABDITIS ELEGANS.
P91422 SIMILAR TO RETROVIRUS-RELATED POL POLYPROTEIN - CAENORHABDITIS ELEGANS.
P91581 COS41.3 - CIONA INTESTINALIS.
POLX_TOBAC RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94 [CONTAINS: PROTEASE (EC 3.4.23.-); REVERSE TRANSCRIPTASE (EC 2.7.7.49); ENDONUCLEASE] - NICOTIANA TABACUM (COMMON TOBACCO).
POL_COYMV PUTATIVE POLYPROTEIN [CONTAINS: COAT PROTEIN; PROTEASE (EC 3.4.23.-); REVERSE TRANSCRIPTASE (EC 2.7.7.49); RIBONUCLEASE H (EC 3.1.26.4)] - COMMELINA YELLOW MOTTLE VIRUS (COYMV).
POST_XENLA POSTERIOR PROTEIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
Q00833 GAG POLYPROTEIN - FUSARIUM OXYSPORUM.
Q03259 GAG POLYPROTEIN (CORE PROTEINS P17, P24, AND P15) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q03728 COPIA POLYPROTEIN PRECURSOR (VIRUS-LIKE PARTICLE PROTEIN) - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q03852 PROVIRUS GAG POLYPROTEIN [CONTAINS PROTEIN MA; PROTEIN P10; PROTEIN CA; PROTEIN NC; PROTEIN PR] - GALLUS GALLUS (CHICKEN).
Q03853 PROVIRUS GAG POLYPROTEIN [CONTAINS PROTEIN MA; PROTEIN P10; PROTEIN CA; PROTEIN NC; PROTEIN PR] - GALLUS GALLUS (CHICKEN).
Q03858 GAG POLYPROTEIN (CONTAINS: CORE PROTEINS P19, P10, P27; INNER COAT PROTEIN P12; PROTEASE P15 (EC 3.4.23.-)) - ROUS SARCOMA VIRUS.
Q03859 GAG POLYPROTEIN (CORE PROTEINS P17, P24, AND P15) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q04134 PUTATIVE RNA-BINDING PROTEIN (ORF 1) - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q07386 GAG POLYPROTEIN (CORE PROTEINS P17 AND P24) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q08461 COPIA PROTEIN - DROSOPHILA SIMULANS (FRUIT FLY).
Q08833 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P15; CORE PROTEIN P24; CORE PROTEIN P12] - HUMAN T-CELL LEUKEMIA VIRUS TYPE II (HTLV-II).
Q12173 CHROMOSOME VII READING FRAME ORF YGR110W - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
Q12186 PUTATIVE ORF YLR116W - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
Q12476 CHROMOSOME IV READING FRAME ORF YDL175C - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
Q14818 ZFM1 PROTEIN, ALTERNATIVELY SPLICED PRODUCT - HOMO SAPIENS (HUMAN).
Q14819 ZFM1 PROTEIN - HOMO SAPIENS (HUMAN).
Q15637 TRANSCRIPTION FACTOR ZFM1 - HOMO SAPIENS (HUMAN).
Q15913 TRANSCRIPTION FACTOR ZFM1 - HOMO SAPIENS (HUMAN).
Q17051 GAG PROTEIN - ASCARIS LUMBRICOIDES (COMMON ROUNDWORM).
Q17329 GAG, POL AND ENV PROTEINS - CAENORHABDITIS ELEGANS.
Q18244 C27B7.5 PROTEIN - CAENORHABDITIS ELEGANS.
Q19336 F11A10.3 PROTEIN - CAENORHABDITIS ELEGANS.
Q21278 K07C5.6 PROTEIN - CAENORHABDITIS ELEGANS.
Q22873 ATP-DEPENDENT RNA HELICASE GLH-1 - CAENORHABDITIS ELEGANS.
Q23698 UMS BINDING PROTEIN - CRITHIDIA FASCICULATA.
Q24081 ZINC FINGER PROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q24262 BLASTOPIA POLYPROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q24280 31 KD POLYPROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q24310 POLYPROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q24585 VIRUS LIKE PARTICLE RNA (VLP H-RNA) - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q26105 ORF1 & ORF2 - PANAGRELLUS REDIVIVUS.
Q26692 TBRRM1 - TRYPANOSOMA BRUCEI BRUCEI.
Q27376 GLH-2 - CAENORHABDITIS ELEGANS.
Q38896 GLYCINE-RICH PROTEIN ATGRP2B - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
Q41188 GLYCINE-RICH PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
Q42412 RNA-BINDING PROTEIN RZ-1 - NICOTIANA SYLVESTRIS (WOOD TOBACCO).
Q60505 PROVIRUS - CRICETULUS GRISEUS (CHINESE HAMSTER).
Q61213 MELANOMA CELL-DERIVED INTRACISTERNAL A-PARTICLE - MUS MUSCULUS (MOUSE).
Q61577 GAG PROTEIN - MUS MUSCULUS (MOUSE).
Q64033 ANTIGEN LEC-A - MUS MUSCULUS (MOUSE).
Q64213 ZINC FINGER PROTEIN 162 (CW17) (MZFM) - MUS MUSCULUS (MOUSE).
Q64983 GAG-POL-PR180 POLYPROTEIN PRECURSOR - ROUS SARCOMA VIRUS.
Q64992 GAG POLYPROTEIN - ROUS SARCOMA VIRUS.
Q64996 GAG PROTEINS - AVIAN LEUKOSIS VIRUS.
Q65590 GAG POLYPROTEIN - BOVINE IMMUNODEFICIENCY-LIKE VIRUS.
Q66161 ORF IV - CAULIFLOWER MOSAIC VIRUS.
Q66233 POLYPROTEIN - CACAO SWOLLEN SHOOT VIRUS.
Q66275 ORF I - CASSAVA VEIN MOSAIC VIRUS.
Q66283 ORF 1 - CASSAVA VEIN MOSAIC VIRUS.
Q66932 GAG POLYPROTEIN - FELINE IMMUNODEFICIENCY VIRUS.
Q66963 GAG GENE - FELINE IMMUNODEFICIENCY VIRUS.
Q66971 GENOMIC RNA FOR GAG PROTEIN, POL PROTEIN, ENV PROTEIN AND 3 ORF'S - FELINE IMMUNODEFICIENCY VIRUS.
Q69385 GAG MRNA - HUMAN ENDOGENOUS RETROVIRUS.
Q71812 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72489 CLADE B, PROVIRAL CLONE - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72497 GAG POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72596 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72604 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72978 IMMUNODEFICIENCY VIRUS HIV-1, CLONE ACH320.2A.1.2, COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72986 IMMUNODEFICIENCY VIRUS HIV-1, CLONE ACH320.2A.2.1, COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q73329 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q73367 GAG POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74084 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74230 CORE PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
Q74452 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74806 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74834 COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q75001 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q75754 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q76621 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
Q76633 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
Q77372 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77602 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77603 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77690 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77697 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77698 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77699 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77700 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77804 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77805 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q78240 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q78565 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q78566 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79350 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79351 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79354 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79356 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79360 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79361 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79362 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79448 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79449 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79450 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79451 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79665 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79791 ISOLATE NY5, COMPLETE GENOME. INFECTIOUS SINGLE LTR MOLECULAR PROVIRAL GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79898 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79899 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80181 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80193 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80306 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80307 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80363 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80364 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80365 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80366 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80621 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80622 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80623 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80624 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80625 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80626 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80628 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80629 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80630 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80631 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80632 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80634 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q82230 T-CELL LYMPHOTROPIC VIRUS TYPE 1 ATL-YS, COMPLETE GENOME - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
Q82322 GAG PROTEIN - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
Q82343 GAG PROTEIN - HUMAN T-CELL LEUKEMIA VIRUS TYPE II (HTLV-II).
Q82440 GAG POLYPROTEIN - HUMAN T-CELL LEUKEMIA VIRUS TYPE II (HTLV-II), AND HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 2B.
Q82850 GAG PRECURSOR - JEMBRANA DISEASE VIRUS.
Q82851 GAG-POL PRECURSOR - JEMBRANA DISEASE VIRUS.
Q83009 GAG PRECURSOR - LYMPHOPROLIFERATIVE DISEASE VIRUS.
Q83131 ENV - AVIAN MYELOBLASTOSIS-ASSOCIATED VIRUS TYPE 1.
Q83168 CAPSID PROTEIN - CAULIFLOWER MOSAIC VIRUS.
Q83391 GAG PRO POL POLYPROTEIN - MOUSE MAMMARY TUMOR VIRUS.
Q84681 PUTATIVE MAJOR CAPSID PROTEIN - PEANUT CHLOROTIC STREAK VIRUS.
Q84808 (GAG), POLYPROTEIN (POL), VIRAL INFECTIVITY FACTOR (VIF), AND ENVELOPE PRECURSOR (ENV) GENES, COMPLETE CDS - PUMA LENTIVIRUS 14.
Q85490 GAG POLYPROTEIN - BOVINE LEUKEMIA VIRUS (BLV).
Q85612 GAG-RMIL-ENV POLYPEPTIDE - AVIAN RETROVIRUS IC10.
Q85613 GAG-RMIL-ENV POLYPEPTIDE - AVIAN RETROVIRUS IC10.
Q86830 POLYPROTEIN I - AVIAN MYELOBLASTOSIS VIRUS.
Q87107 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87621 GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87705 CLONE 1A11 SEQUENCE - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87763 (SIV) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87955 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87964 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88000 (32H RE-ISOLATE OF SIVMAC 251, CLONE J12) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88001 (32H RE-ISOLATE OF SIVMAC 251, CLONE J2) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88003 (32H RE-ISOLATE OF SIVMAC 251, CLONE J8) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88015 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV), AND SIMIAN-HUMAN IMMUNODEFICIENCY VIRUS.
Q88092 (32H RE-ISOLATE OF SIVMAC 251, CLONE J3) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88098 (CLONE 2) (ENV) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88134 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88142 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88284 GAG POLYPROTEIN - SNAKEHEAD RETROVIRUS.
Q88285 GAG-POL POLYPROTEIN - SNAKEHEAD RETROVIRUS.
Q88937 GAG POLYPROTEIN - WALLEYE DERMAL SARCOMA VIRUS.
Q89464 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q89810 ENV - AVIAN MYELOBLASTOSIS-ASSOCIATED VIRUS TYPE 2, AND AVIAN MYELOBLASTOSIS-ASSOCIATED VIRUS 1/2.
Q90041 GAG=GAG...POL - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1.
Q91591 71 KDA PROTEIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
Q91594 CELLULAR NUCLEIC ACID BINDING PROTEIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
Q92744 SF1-BO ISOFORM - HOMO SAPIENS (HUMAN).
Q92745 SF1-HL1 ISOFORM - HOMO SAPIENS (HUMAN).
Q94821 CNJB PROTEIN - TETRAHYMENA THERMOPHILA.
Q94885 MDG3 RETROTRANSPOSON DNA - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q94901 RNA-BINDING PROTEIN LARK - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q96897 ENDOGENOUS RETROVIRUS-K, LTR U5 AND GAG GENE - HUMAN ENDOGENOUS RETROVIRUS K.
Q97058 STRAIN CM240, COMPLETE PROVIRAL GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q98881 NO ARCHES - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBRA DANIO).
Q99219 HYPOTHETICAL 34.1 KD PROTEIN - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
Q99315 CHROMOSOME VII READING FRAME ORF YGR110W - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
SFR7_HUMAN SPLICING FACTOR, ARGININE/SERINE-RICH 7 (SPLICING FACTOR 9G8) - HOMO SAPIENS (HUMAN).
SLU7_YEAST PRE-MRNA SPLICING FACTOR SLU7 - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
TOP3_HUMAN DNA TOPOISOMERASE III (EC 5.99.1.2) - HOMO SAPIENS (HUMAN).
Y1R1_DROME HYPOTHETICAL 50 KD PROTEIN IN TYPE I RETROTRANSPOSABLE ELEMENT R1DM (ORF 1) - DROSOPHILA MELANOGASTER (FRUIT FLY).
YEW7_YEAST HYPOTHETICAL 16.6 KD PROTEIN IN GDI1-COX15 INTERGENIC REGION - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
YIH9_YEAST HYPOTHETICAL 41.6 KD PROTEIN IN SDS3-THS1 INTERGENIC REGION - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
YNZ5_YEAST HYPOTHETICAL 17.1 KD PROTEIN IN SIP3-MRPL30 INTERGENIC REGION - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
YRD6_CAEEL HYPOTHETICAL 143.5 KD PROTEIN K02A2.6 IN CHROMOSOME II - CAENORHABDITIS ELEGANS.
YTX1_XENLA TRANSPOSON TX1 HYPOTHETICAL 82 KD PROTEIN (ORF 1) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
Scan History
OWL30_2    5  1500 NSINGLE    
SPTR37_9f 2 1500 NSINGLE
Initial Motifs
Motif 1  width=10
Element Seqn Id St Int Rpt
QCCYNCGKPG CNBP_HUMAN 96 96 -
VKCFNCGKEG GAG_HV1N5 389 389 -
IKCFNCGKEG GAG_HV1MN 392 392 -
VKCFNCGKEG GAG_HV1JR 389 389 -
IKCWNCGKEG GAG_SIVMK 391 391 -
PKCYNCGKFG GAG_SIVA1 398 398 -
LRCYNCGKFG GAG_SIVAT 397 397 -
QKCYNCGKPG GAG_VILV 385 385 -
QKCYNCGKPG GAG_VILVK 385 385 -
QKCYNCGKPG GAG_VILV1 385 385 -
RACYKCGKPG HEXP_LEIMA 222 222 -
VTCWNCGKQG GAG_HV2D2 388 388 -
VKCYNCGKFG GAG_SIVAG 402 402 -
QKCYYCGKPG GAG_OMVVS 384 384 -
PVCFSCGKTG GAG_MMTVB 525 525 -
RACFRCNEMG YL51_CAEEL 307 307 -
QCCYNCGKPG CNBP_MOUSE 89 89 -
VKCHHCGREG COPI_DROME 230 230 -
KACFNCGRMG GAG_IPHA 447 447 -
RKCYSCGKYG POST_XENLA 413 413 -
VKCYSCGKIG BYR3_SCHPO 135 135 -
GCCFKCGRKG GAG_SRV1 548 548 -
KRCNNCGKPG GAG_FIVT2 394 394 -
SGCFKCGESG GRP2_NICSY 157 157 -
GPCYRCLKEG GAG_BLVAU 345 345 -
GPCYRCLKEG GAG_BLVJ 345 345 -
SFCRNCGEAG SLU7_YEAST 120 120 -
GKCYNCGQIG GAG2_HUMAN 291 291 -
VFCYNCGNAG YIH9_YEAST 173 173 -
KACYVCGKIG YNZ5_YEAST 4 4 -
RGCFNCGEQG GLH1_CAEEL 206 206 -
PTCFYCNKKG YRD6_CAEEL 239 239 -
RNCYNCNQPG POLX_TOBAC 230 230 -
GLCYTCGSPG GAG_RSVP 507 507 -
SVCRQCGQQG Y1R1_DROME 417 417 -

Motif 2 width=9
Element Seqn Id St Int Rpt
GHTAAKCQN Y1R1_DROME 426 -1 -
GHIAWNCPK YL51_CAEEL 316 -1 -
GHIAKNCRA GAG_HV1N5 398 -1 -
GHIAKNCRA GAG_HV1MN 401 -1 -
GHIARNCRA GAG_HV1JR 398 -1 -
GHSARQCRA GAG_SIVMK 400 -1 -
GHLAKDCRG GAG_SIVA1 428 20 -
GHLAKDCRG GAG_SIVAT 427 20 -
GHLARQCRQ GAG_VILV 394 -1 -
GHLARQCRQ GAG_VILVK 394 -1 -
GHLARQCRQ GAG_VILV1 394 -1 -
GHISRDCPS HEXP_LEIMA 262 30 -
GHTARQCRA GAG_HV2D2 397 -1 -
GHLAKDCRG GAG_SIVAG 432 20 -
GHLARQCRQ GAG_OMVVS 393 -1 -
GHIRKDCKD GAG_MMTVB 534 -1 -
GHLARDCDH CNBP_HUMAN 105 -1 -
GHLARDCDH CNBP_MOUSE 98 -1 -
GHIKKDCFH COPI_DROME 239 -1 -
GHLKKDCQA GAG_IPHA 456 -1 -
GHIARFCRT POST_XENLA 422 -1 -
GHIAVNCTS BYR3_SCHPO 166 21 -
GHFAKNCHE GAG_SRV1 557 -1 -
GHLAANCWQ GAG_FIVT2 403 -1 -
GHFARDCSQ GRP2_NICSY 166 -1 -
GHWARDCPT GAG_BLVAU 354 -1 -
GHWARDCPT GAG_BLVJ 354 -1 -
GHKEKDCME SLU7_YEAST 129 -1 -
GHLKKNCPV GAG2_HUMAN 300 -1 -
GHFGDDCAE YIH9_YEAST 182 -1 -
GHISKDCPK YNZ5_YEAST 144 130 -
GHRSIECPN GLH1_CAEEL 215 -1 -
GHYATNCRS YRD6_CAEEL 248 -1 -
GHFKRDCPN POLX_TOBAC 239 -1 -
GHNAKQCRK GAG_RSVP 542 25 -
Final Motifs
Motif 1  width=10
Element Seqn Id St Int Rpt
KGCWKCGKEG GAG_HV1B1 410 410 -
KGCWKCGKEG Q80632 409 409 -
KGCWKCGKEG Q80629 409 409 -
KGCWKCGKEG Q80628 406 406 -
KGCWKCGKEG Q80626 408 408 -
KGCWKCGKEG Q80623 412 412 -
KGCWKCGKEG Q80307 409 409 -
KGCWKCGKEG Q80306 409 409 -
KGCWKCGKEG Q80193 407 407 -
KGCWKCGKEG Q79791 411 411 -
KGCWKCGKEG Q79450 409 409 -
KGCWKCGKEG Q79448 414 414 -
KGCWKCGKEG Q79362 409 409 -
KGCWKCGKEG Q79360 409 409 -
KGCWKCGKEG Q78566 405 405 -
KGCWKCGKEG Q78240 411 411 -
KGCWKCGKEG Q77804 406 406 -
KGCWKCGKEG Q77699 407 407 -
KGCWKCGKEG Q77698 412 412 -
KGCWKCGKEG Q75754 409 409 -
KGCWKCGKEG Q75001 408 408 -
KGCWKCGKEG Q74834 411 411 -
KGCWKCGKEG Q74806 411 411 -
KGCWKCGKEG Q74084 411 411 -
KGCWKCGKEG Q73367 411 411 -
KGCWKCGKEG Q72986 411 411 -
KGCWKCGKEG Q72978 411 411 -
KGCWKCGKEG Q72497 411 411 -
KGCWKCGKEG Q71812 411 411 -
KGCWKCGKEG P90259 409 409 -
KGCWKCGKEG P90258 408 408 -
KGCWKCGKEG P90257 409 409 -
KGCWKCGKEG P90256 409 409 -
KGCWKCGKEG P90255 408 408 -
KGCWKCGKEG P90073 409 409 -
KGCWKCGKEG P90072 409 409 -
KGCWKCGKEG O93112 406 406 -
KGCWKCGKEG O92884 412 412 -
KGCWKCGKEG O92883 412 412 -
KGCWKCGKEG O92652 409 409 -
KGCWKCGKEG O92651 409 409 -
KGCWKCGKEG O92294 411 411 -
KGCWKCGKEG O90288 414 414 -
KGCWKCGKEG O90172 411 411 -
KGCWKCGKEG O90158 411 411 -
KGCWKCGKEG O90157 411 411 -
KGCWKCGKEG O90098 403 403 -
KGCWKCGKEG O90090 406 406 -
KGCWKCGKEG O90081 406 406 -
KGCWKCGKEG O90072 406 406 -
KGCWKCGKEG O90064 406 406 -
KGCWKCGKEG O90056 406 406 -
KGCWKCGKEG O89962 406 406 -
KGCWKCGKEG O89958 406 406 -
KGCWKCGKEG O89939 412 412 -
KGCWKCGKEG O89933 412 412 -
KGCWKCGKEG O89926 412 412 -
KGCWKCGKEG O42039 411 411 -
KGCWKCGKEG O41792 412 412 -
KGCWKCGKEG O41791 412 412 -
KGCWKCGKEG O40215 411 411 -
KGCWKCGKEG GAG_HV1Y2 410 410 -
KGCWKCGKEG GAG_HV1U4 404 404 -
KGCWKCGKEG GAG_HV1PV 410 410 -
VKCFNCGKEG GAG_HV1N5 389 389 -
KGCWKCGKEG GAG_HV1MA 416 416 -
KGCWKCGKEG GAG_HV1LW 410 410 -
KGCWKCGKEG GAG_HV1H2 410 410 -
KGCWKCGKEG GAG_HV1BR 410 410 -
KGCWKCGKEG GAG_HV1B5 410 410 -
QGCWKCGKEG Q97058 409 409 -
IKCFNCGKEG GAG_HV1MN 392 392 -
RGCWKCGKEG Q79451 406 406 -
RGCWKCGKEG Q79449 410 410 -
RGCWKCGKEG Q79350 409 409 -
RGCWKCGKEG Q78565 415 415 -
RGCWKCGKEG Q77697 401 401 -
RGCWKCGKEG Q74452 406 406 -
RGCWKCGKEG Q73329 416 416 -
RGCWKCGKEG O93020 411 411 -
RGCWKCGKEG O92901 416 416 -
RGCWKCGKEG O92900 416 416 -
RGCWKCGKEG O92888 416 416 -
RGCWKCGKEG O92879 411 411 -
RGCWKCGKEG O92878 411 411 -
RGCWKCGKEG O71261 416 416 -
VKCFNCGKEG GAG_HV1A2 391 391 -
VKCFNCGKEG GAG_HV1OY 388 388 -
VKCFNCGKEG O89290 385 385 -
VKCFNCGKEG O89291 385 385 -
VKCFNCGKEG O92897 390 390 -
VKCFNCGKEG O92898 390 390 -
VKCFNCGKEG O93085 395 395 -
VKCFNCGKEG Q77602 392 392 -
VKCFNCGKEG Q77603 390 390 -
VKCFNCGKEG Q79898 390 390 -
IKCFNCGKEG Q80624 392 392 -
IKCFNCGKEG Q80365 391 391 -
IKCFNCGKEG Q79665 394 394 -
IKCFNCGKEG Q79351 392 392 -
IKCFNCGKEG GAG_HV1Z2 391 391 -
IKCFNCGKEG GAG_HV1EL 390 390 -
IKCFNCGKEG P89692 388 388 -
IKCFNCGKEG Q80364 391 391 -
IKCFNCGKEG Q79356 390 390 -
IKCFNCGKEG P90248 388 388 -
KGCWKCGKEG GAG_HV1RH 410 410 -
KGCWKCGKEG Q80631 411 411 -
KGCWKCGKEG O12157 408 408 -
VKCFNCGKEG Q80634 385 385 -
IKCFNCGKEG O71271 390 390 -
IKCFNCGKEG O92894 390 390 -
IKCFNCGKEG GAG_HV1ND 387 387 -
IKCFNCGKEG O41782 391 391 -
IKCFNCGKEG O41783 391 391 -
KGCWKCGKEG Q79354 409 409 -
KGCWKCGKEG GAG_HV1J3 410 410 -
KGCWKCGKEG Q77690 411 411 -
KGCWKCGKEG O71970 413 413 -
KGCWKCGKEG O71965 411 411 -
IKCWNCGKEG GAG_SIVS4 392 392 -
IKCWNCGKEG O90316 392 392 -
VKCFNCGKEG GAG_HV1JR 389 389 -
KGCWKCGKEG Q79361 409 409 -
VKCFNCGKEG O93182 391 391 -
VKCFNCGKEG Q80630 391 391 -
VKCFNCGKEG Q80621 386 386 -
VKCFNCGKEG Q72604 390 390 -
VKCFNCGKEG Q72596 390 390 -
VKCFNCGKEG O93215 391 391 -
KGCFKCGKVG Q94821 1449 1449 -
IKCFNCGKEG P89971 390 390 -
IKCFNCGKEG Q77372 394 394 -
KGCWKCGREG GAG_HV1C4 410 410 -
KGCWKCGREG P88150 409 409 -
KGCWKCGREG P90071 409 409 -
IKCFNCGKEG P90239 392 392 -
KGCWKCGREG Q77700 404 404 -
KGCWKCGREG Q77805 408 408 -
KGCWKCGREG Q79899 411 411 -
KGCWKCGREG Q80363 405 405 -
KGCWKCGREG Q80622 409 409 -
IKCFNCGKEG Q80625 387 387 -
VKCWNCGKEG GAG_SIVMS 391 391 -
VKCFNCGKVG Q80366 390 390 -
VKCWNCGKEG O41911 391 391 -
VKCFNCGKEG Q80181 391 391 -
IKCWNCGKEG GAG_HV2CA 389 389 -
IKCWNCGKEG Q89464 392 392 -
IKCWNCGKEG Q88134 392 392 -
IKCWNCGKEG Q88015 391 391 -
IKCWNCGKEG Q88003 391 391 -
IKCWNCGKEG Q88001 391 391 -
IKCWNCGKEG Q88000 391 391 -
IKCWNCGKEG Q87705 391 391 -
IKCWNCGKEG Q76621 389 389 -
IKCWNCGKEG Q07386 391 391 -
IKCWNCGKEG P89153 392 392 -
IKCWNCGKEG O57058 391 391 -
IKCWNCGKEG GAG_SIVSP 392 392 -
IKCWNCGKEG GAG_SIVMK 391 391 -
IKCWNCGKEG GAG_SIVM1 391 391 -
IKCWNCGKEG GAG_HV2ST 389 389 -
IKCWNCGKEG GAG_HV2SB 388 388 -
VKCFNCGKEG O92891 390 390 -
VKCFNCGKEG O92892 390 390 -
IRCWNCGKEG GAG_HV2D1 389 389 -
IRCWNCGKEG P88141 389 389 -
IKCFNCGKEG O91080 393 393 -
IKCFNCGKEG O91079 393 393 -
IKCFNCGKEG GAG_SIVCZ 400 400 -
IKCFKCGKIG GAG_SIVAI 411 411 -
FKCWNCGKEG GAG_HV2RO 389 389 -
IKCWNCGKEG Q03859 391 391 -
PKCYNCGKFG GAG_SIVA1 398 398 -
GGCFKCGKKG GAG_SRV2 544 544 -
LKCFNCGKEG Q87621 412 412 -
GGCFRCGKRG O41288 548 548 -
NKCLKCGKPG P89903 421 421 -
IKCLKCGKLG Q88098 421 421 -
RTCFNCGKPG Q64033 490 490 -
RTCFNCGKPG Q61577 458 458 -
RTCFNCGKPG Q61213 458 458 -
RTCFNCGKPG GAG_IPMA 458 458 -
IRCWNCGKEG GAG_HV2G1 390 390 -
LKCFNCGKPG P89686 409 409 -
NKCFICGKEG O48829 280 280 -
LRCYNCGKFG GAG_SIVAT 397 397 -
VKCWNCGKAG Q88142 392 392 -
IKCWNCGKDG GAG_HV2KR 389 389 -
VTCWNCGKVG Q76633 388 388 -
QKCYNCGKPG GAG_VILV 385 385 -
QKCYNCGKPG GAG_VILVK 385 385 -
QKCYNCGKPG GAG_VILV2 385 385 -
QKCYNCGKPG GAG_VILV1 385 385 -
QRCYNCGKPG GAG_CAEVC 379 379 -
AKCFNCGKTG Q03259 433 433 -
RACYKCGKPG HEXP_LEIMA 222 222 -
GCCFKCGKKG GAG_MPMV 547 547 -
GCCFKCGKKG O56224 546 546 -
GCCFKCGKKG O56225 546 546 -
GCCFKCGKKG O92810 546 546 -
IKCYNCGKPG Q87107 416 416 -
PVCFSCGKTG Q83391 525 525 -
QKCYHCGKPG Q65590 421 421 -
QKCYHCGKPG GAG_BIV27 421 421 -
QKCYHCGKPG GAG_BIV06 421 421 -
VVCLKCGKPG Q87763 414 414 -
VTCWNCGKQG GAG_HV2D2 388 388 -
GPCRNCGQEG O44758 655 655 -
GPCRNCGQEG O76743 639 639 -
VKCXXCGKEG Q72489 390 390 -
VKCYNCGKFG GAG_SIVAG 402 402 -
GDCFNCGKPG Q42412 127 127 -
QKCYYCGKPG GAG_OMVVS 384 384 -
VTCWNCGKAG Q74230 387 387 -
QPCFRCGKAG Q90041 355 355 -
QPCFRCGKAG Q82322 355 355 -
QPCFRCGKAG Q82230 355 355 -
QPCFRCGKAG O56621 355 355 -
QPCFRCGKAG O56229 354 354 -
QPCFRCGKAG O56228 354 354 -
QPCFRCGKAG O56227 354 354 -
QPCFRCGKAG GAG_HTL1M 355 355 -
QPCFRCGKAG GAG_HTL1C 355 355 -
QPCFRCGKAG GAG_HTL1A 355 355 -
LTCFNCGKPG O90272 394 394 -
GNCRNCGKAG Q88284 535 535 -
GNCRNCGKAG Q88285 535 535 -
QPCFRCGKIG Q82440 361 361 -
QPCFRCGKIG Q82343 361 361 -
LNCFNCGKPG Q84808 399 399 -
QPCFRCGKVG Q08833 361 361 -
QPCFRCGKVG GAG_HTLV2 361 361 -
PVCFSCGKTG GAG_MMTVC 525 525 -
QPCFRCGKTG O70641 360 360 -
EGCYNCGDTG O65639 132 132 -
QGCWKCGKPG GAG_HV2BE 410 410 -
PVCFSCGKTG O92804 524 524 -
PVCFSCGKTG O56220 524 524 -
PVCFSCGKTG GAG_MMTVB 525 525 -
KACYNCGRGG O42395 67 67 -
QCCYNCGKPG CNBP_HUMAN 96 96 -
QCCYNCGKPG CNBP_MOUSE 89 89 -
QKCYSCGEFG O57348 112 112 -
QKCYSCGEFG P70000 118 118 -
PVCFNCKKPG Q66971 375 375 -
PVCFNCKKPG GAG_FIVPE 375 375 -
VKCHHCGREG COPI_DROME 230 230 -
VKCHHCGREG Q03728 230 230 -
VKCHHCGREG Q08461 230 230 -
VKCHHCGREG Q24280 230 230 -
VKCHHCGREG Q24585 231 231 -
SGCYRCGKEG O08752 160 160 -
SGCYRCGKEG O02916 160 160 -
QKCFKCGKPG Q82851 386 386 -
QKCFKCGKPG Q82850 386 386 -
KACFNCGRMG GAG_IPHA 447 447 -
DACYNCGRGG Q91594 63 63 -
RKCYSCGKYG POST_XENLA 413 413 -
VKCYSCGKIG BYR3_SCHPO 135 135 -
GCCFKCGRKG GAG_SRV1 548 548 -
QGCWKCGKAG Q87955 413 413 -
QGCWKCGKAG Q87964 413 413 -
QTCYNCGKPG GAG_EIAVY 381 381 -
PVCFNCKKPG Q66932 375 375 -
KRCNNCGKPG GAG_FIVT2 394 394 -
SDCYKCGEPG Q41188 129 129 -
SGCFKCGESG GRP2_NICSY 157 157 -
CKCYICGQEG POL_COYMV 879 879 -
CKCYLCGDEG Q66233 786 786 -
KKCNKCGKPG GAG_FIVSD 394 394 -
KKCNKCGKPG GAG_FIVWO 394 394 -
KVCWICGKEG O82196 206 206 -
GPCYRCLKEG GAG_BLVAU 345 345 -
GPCYRCLKEG GAG_BLVJ 345 345 -
GPCYRCLKEG O92811 345 345 -
GPCYRCLKEG O92812 345 345 -
GPCYRCLKEG Q85490 346 346 -
KKCNKCGKPG Q66963 394 394 -
ARCWSCGGAG Q83009 655 655 -
SFCRNCGEAG SLU7_YEAST 120 120 -
GKCYNCGQIG GAG2_HUMAN 291 291 -
GKCYNCGQIG Q69385 544 544 -
GKCYNCGQIG P87889 544 544 -
LSCYSCGESG Q38896 180 180 -
VTCYNCGKKG Q00833 344 344 -
CKCYNCGEEG Q66275 739 739 -
CKCYNCGEEG Q66283 739 739 -
QRCFKCNKEG Q26692 277 277 -
LTCWFCKKEG O81903 255 255 -
GKCYNCGQIG Q96897 544 544 -
QGCWKCGKSG GAG_HV2NZ 408 408 -
LKCYECGETG O23646 99 99 -
LKCYECGETG O81126 99 99 -
RTCYNCGQSG O46363 75 75 -
IYCYNCGGKG Q12476 162 162 -
VFCYNCGNAG YIH9_YEAST 173 173 -
IVCRHCGSIG O74555 334 334 -
SKCYECGELG O23645 89 89 -
SKCYECGELG O81127 89 89 -
IVCDNCGRKG O23080 410 410 -
QPCFRCGQAG O12272 350 350 -
GACENCGAMG Q21278 113 113 -
VTCYKCGEKG Q98881 245 245 -
IKCWNCGKEE Q88092 391 391 -
VTCYKCGEKG O19137 217 217 -
RSCFKCGKIG O24586 363 363 -
KACYVCGKIG YNZ5_YEAST 4 4 -
TVCTKCGGAG O08817 277 277 -
TVCTKCGGAG Q14818 277 277 -
TVCTKCGGAG Q14819 277 277 -
TVCTKCGGAG Q15637 277 277 -
TVCTKCGGAG Q15913 277 277 -
TVCTKCGGAG Q64213 277 277 -
TVCTKCGGAG Q92744 277 277 -
TVCTKCGGAG Q92745 277 277 -
CRCYACGEEG O72700 737 737 -
ITCYRCGAAG O17342 143 143 -
GACYHCQQEG O77233 151 151 -
RACYNCGQPG P90606 71 71 -
RGCFNCGEQG Q27376 473 473 -
RGCFNCGEQG Q22873 262 262 -
RTCYNCGQTG Q23698 27 27 -
RGCFNCGEQG GLH1_CAEEL 206 206 -
NTCFNCKKYG O01836 202 202 -
RLCFYCKKEG Q12173 265 265 -
RLCFYCKKEG Q99219 265 265 -
RLCFYCKKEG Q99315 265 265 -
SGCFVCGQPG GAG_JSRV 507 507 -
ITCYKCGNKG Q24081 266 266 -
FRCFKCGRNG Q26105 245 245 -
PMCQICGKRG O82331 267 267 -
EDCFKCGRRG P91581 242 242 -
DRCYECGEKG SFR7_HUMAN 104 104 -
TKCFSCNQEG Q24262 285 285 -
IVCKICGQTG Q12186 297 297 -
PTCQICGKHG O23450 248 248 -
PTCFYCNKKG P91422 109 109 -
PTCFYCNKKG YRD6_CAEEL 239 239 -
PLCTNCGKVG O81617 263 263 -
GKCHHCGKIG O65223 289 289 -
AKCGKCGQLG O80793 321 321 -
VTCYRCGQPG Q24310 243 243 -
EQCYRCGRSG Q94901 168 168 -
RNCYNCNQPG POLX_TOBAC 230 230 -
SACFNCGKTR Q60505 460 460 -
QLCTKCLKRG Q17051 383 383 -
PQCFTCGEMG O76571 608 608 -
IHCKSCGEAG O22271 678 678 -
GLCYTCGSPG GAG_RSVP 507 507 -
GLCYTCGSPG Q89810 507 507 -
GLCYTCGSPG Q86830 507 507 -
GLCYTCGSPG Q85613 507 507 -
GLCYTCGSPG Q85612 507 507 -
GLCYTCGSPG Q83131 507 507 -
GLCYTCGSPG Q64996 507 507 -
GLCYTCGSPG Q64992 505 505 -
GLCYTCGSPG Q64983 507 507 -
GLCYTCGSPG Q03853 507 507 -
GLCYTCGSPG Q03852 507 507 -
GLCYTCGSPG O92805 507 507 -
CRCWICTEEG COAT_FMVD 409 409 -
CRCWICQEEG Q84681 390 390 -
RLCYTCGSPG O92954 507 507 -
CRCWICNIEG Q83168 411 411 -
CRCWICNIEG Q66161 411 411 -
CRCWICNIEG COAT_CAMVS 412 412 -
CRCWICNIEG COAT_CAMVN 410 410 -
CRCWICNIEG COAT_CAMVD 411 411 -
CRCWICNIEG COAT_CAMVC 410 410 -
CRCWVCNIEG COAT_CERV 418 418 -
CQCWLCHEEG COAT_SOCMV 380 380 -
PICTHCGKVG O23302 284 284 -
ELCYTCGSPG Q03858 507 507 -
DTCRYCGQPG O22452 182 182 -
PVCQICGRIG O48811 279 279 -
GSCYACGQLG Q94885 377 377 -
NTCFFCKQPG O92815 501 501 -
SVCRQCGQQG Y1R1_DROME 417 417 -
NTCFFCKQPG Q88937 501 501 -
RACFRCNEMG Q17329 675 675 -
RSCSQCGNNG O04544 3 3 -
PKCSYCNKLG O23588 297 297 -
ITCHNCHERG Q19336 204 204 -
GECYRCGQTG O01418 639 639 -
ITCFKCQGRG O81453 268 268 -
GHCFHCQEHG Q18244 168 168 -
QLCLYCGNNG O93283 346 346 -
AVCFYCKETG O23864 253 253 -
TSCNVCGNSG O49671 666 666 -
VQCTNCQEYG Q04134 382 382 -
TICSLCGIYG O23411 256 256 -
RRCFSCHQVG Q91591 210 210 -
PICSFCNKVG O82607 291 291 -
VICSLCGVFG O80791 193 193 -
VRCFLCKNLG YTX1_XENLA 240 240 -
IKCSFCHEAG YEW7_YEAST 123 123 -
RKCSLCHQPG O70157 984 984 -
RKCSLCHQPG TOP3_HUMAN 982 982 -
AQCHRCQKFG O17451 284 284 -
PKCTHCNRIG O04549 276 276 -
ATCFVCKQVG P91223 280 280 -

Motif 2 width=9
Element Seqn Id St Int Rpt
GHQMKDCTE GAG_HV1B1 419 -1 -
GHQMKDCTE Q80632 418 -1 -
GHQMKDCTE Q80629 418 -1 -
GHQMKDCTE Q80628 415 -1 -
GHQMKDCTE Q80626 417 -1 -
GHQMKDCTE Q80623 421 -1 -
GHQMKDCTE Q80307 418 -1 -
GHQMKDCTE Q80306 418 -1 -
GHQMKDCTE Q80193 416 -1 -
GHQMKDCTE Q79791 420 -1 -
GHQMKDCTE Q79450 418 -1 -
GHQMKDCTE Q79448 423 -1 -
GHQMKDCTE Q79362 418 -1 -
GHQMKDCTE Q79360 418 -1 -
GHQMKDCTE Q78566 414 -1 -
GHQMKDCTE Q78240 420 -1 -
GHQMKDCTE Q77804 415 -1 -
GHQMKDCTE Q77699 416 -1 -
GHQMKDCTE Q77698 421 -1 -
GHQMKDCTE Q75754 418 -1 -
GHQMKDCTE Q75001 417 -1 -
GHQMKDCTE Q74834 420 -1 -
GHQMKDCTE Q74806 420 -1 -
GHQMKDCTE Q74084 420 -1 -
GHQMKDCTE Q73367 420 -1 -
GHQMKDCTE Q72986 420 -1 -
GHQMKDCTE Q72978 420 -1 -
GHQMKDCTE Q72497 420 -1 -
GHQMKDCTE Q71812 420 -1 -
GHQMKDCTE P90259 418 -1 -
GHQMKDCTE P90258 417 -1 -
GHQMKDCTE P90257 418 -1 -
GHQMKDCTE P90256 418 -1 -
GHQMKDCTE P90255 417 -1 -
GHQMKDCTE P90073 418 -1 -
GHQMKDCTE P90072 418 -1 -
GHQMKDCTE O93112 415 -1 -
GHQMKDCTE O92884 421 -1 -
GHQMKDCTE O92883 421 -1 -
GHQMKDCTE O92652 418 -1 -
GHQMKDCTE O92651 418 -1 -
GHQMKDCTE O92294 420 -1 -
GHQMKDCTE O90288 423 -1 -
GHQMKDCTE O90172 420 -1 -
GHQMKDCTE O90158 420 -1 -
GHQMKDCTE O90157 420 -1 -
GHQMKDCTE O90098 412 -1 -
GHQMKDCTE O90090 415 -1 -
GHQMKDCTE O90081 415 -1 -
GHQMKDCTE O90072 415 -1 -
GHQMKDCTE O90064 415 -1 -
GHQMKDCTE O90056 415 -1 -
GHQMKDCTE O89962 415 -1 -
GHQMKDCTE O89958 415 -1 -
GHQMKDCTE O89939 421 -1 -
GHQMKDCTE O89933 421 -1 -
GHQMKDCTE O89926 421 -1 -
GHQMKDCTE O42039 420 -1 -
GHQMKDCTE O41792 421 -1 -
GHQMKDCTE O41791 421 -1 -
GHQMKDCTE O40215 420 -1 -
GHQMKDCTE GAG_HV1Y2 419 -1 -
GHQMKDCTE GAG_HV1U4 413 -1 -
GHQMKDCTE GAG_HV1PV 419 -1 -
GHIAKNCRA GAG_HV1N5 398 -1 -
GHQMKDCTE GAG_HV1MA 425 -1 -
GHQMKDCTE GAG_HV1LW 419 -1 -
GHQMKDCTE GAG_HV1H2 419 -1 -
GHQMKDCTE GAG_HV1BR 419 -1 -
GHQMKDCTE GAG_HV1B5 419 -1 -
GHQMKDCTE Q97058 418 -1 -
GHIAKNCRA GAG_HV1MN 401 -1 -
GHQMKDCTE Q79451 415 -1 -
GHQMKDCTE Q79449 419 -1 -
GHQMKDCTE Q79350 418 -1 -
GHQMKDCTE Q78565 424 -1 -
GHQMKDCTE Q77697 410 -1 -
GHQMKDCTE Q74452 415 -1 -
GHQMKDCTE Q73329 425 -1 -
GHQMKDCTE O93020 420 -1 -
GHQMKDCTE O92901 425 -1 -
GHQMKDCTE O92900 425 -1 -
GHQMKDCTE O92888 425 -1 -
GHQMKDCTE O92879 420 -1 -
GHQMKDCTE O92878 420 -1 -
GHQMKDCTE O71261 425 -1 -
GHIAKNCRA GAG_HV1A2 400 -1 -
GHIAKNCRA GAG_HV1OY 397 -1 -
GHIAKNCRA O89290 394 -1 -
GHIAKNCRA O89291 394 -1 -
GHIAKNCRA O92897 399 -1 -
GHIAKNCRA O92898 399 -1 -
GHIAKNCRA O93085 404 -1 -
GHIAKNCRA Q77602 401 -1 -
GHIAKNCRA Q77603 399 -1 -
GHIAKNCRA Q79898 399 -1 -
GHIAKNCRA Q80624 401 -1 -
GHIAKNCRA Q80365 400 -1 -
GHIAKNCRA Q79665 403 -1 -
GHIAKNCRA Q79351 401 -1 -
GHIAKNCRA GAG_HV1Z2 400 -1 -
GHIAKNCRA GAG_HV1EL 399 -1 -
GHLAKNCRA P89692 397 -1 -
GHLAKNCRA Q80364 400 -1 -
GHLAKNCRA Q79356 399 -1 -
GHLAKNCRA P90248 397 -1 -
GHQMKDCTN GAG_HV1RH 419 -1 -
GHQLKDCTE Q80631 420 -1 -
GHQVKDCTE O12157 417 -1 -
GHVAKNCRA Q80634 394 -1 -
GHIAKYCRA O71271 399 -1 -
GHIAKYCRA O92894 399 -1 -
GHTAKNCRA GAG_HV1ND 396 -1 -
GHTAKNCRA O41782 400 -1 -
GHTAKNCRA O41783 400 -1 -
GHQMKDCTD Q79354 418 -1 -
GHQMKDCNE GAG_HV1J3 419 -1 -
GHQMKDCNE Q77690 420 -1 -
GHQMKDCIE O71970 422 -1 -
GHQMKDCIE O71965 420 -1 -
GHSAKQCRA GAG_SIVS4 401 -1 -
GHSAKQCRA O90316 401 -1 -
GHIARNCRA GAG_HV1JR 398 -1 -
GHQMKECTE Q79361 418 -1 -
GHIARNCRA O93182 400 -1 -
GHIARNCRA Q80630 400 -1 -
GHIARNCRA Q80621 395 -1 -
GHIARNCRA Q72604 399 -1 -
GHIARNCRA Q72596 399 -1 -
GHIARNCRA O93215 400 -1 -
GHMAKDCTE Q94821 1458 -1 -
GHIARNCRA P89971 399 -1 -
GHIARNCRA Q77372 403 -1 -
GHQMKDCTE GAG_HV1C4 419 -1 -
GHQMKDCTE P88150 418 -1 -
GHQMKDCTE P90071 418 -1 -
GHLARNCRA P90239 401 -1 -
GHQMKDCTE Q77700 413 -1 -
GHQMKDCTE Q77805 417 -1 -
GHQMKDCTE Q79899 420 -1 -
GHQMKDCTE Q80363 414 -1 -
GHQMKDCTE Q80622 418 -1 -
GHLARNCRA Q80625 396 -1 -
GHTAKQCKA GAG_SIVMS 400 -1 -
GHIAKNCRA Q80366 399 -1 -
GHSARQCRA O41911 400 -1 -
GHIARNCKA Q80181 400 -1 -
GHSARQCRA GAG_HV2CA 398 -1 -
GHSARQCRA Q89464 401 -1 -
GHSARQCRA Q88134 401 -1 -
GHSARQCRA Q88015 400 -1 -
GHSARQCRA Q88003 400 -1 -
GHSARQCRA Q88001 400 -1 -
GHSARQCRA Q88000 400 -1 -
GHSARQCRA Q87705 400 -1 -
GHSARQCRA Q76621 398 -1 -
GHSARQCRA Q07386 400 -1 -
GHSARQCRA P89153 401 -1 -
GHSARQCRA O57058 400 -1 -
GHSARQCRA GAG_SIVSP 401 -1 -
GHSARQCRA GAG_SIVMK 400 -1 -
GHSARQCRA GAG_SIVM1 400 -1 -
GHSARQCRA GAG_HV2ST 398 -1 -
GHSARQCRA GAG_HV2SB 397 -1 -
GHIATNCRA O92891 399 -1 -
GHIATNCRA O92892 399 -1 -
GHSAKQCRA GAG_HV2D1 398 -1 -
GHSAKQCRA P88141 398 -1 -
GHLARNCKA O91080 402 -1 -
GHLARNCKA O91079 402 -1 -
GHLARNCKA GAG_SIVCZ 409 -1 -
GHMAKDCKN GAG_SIVAI 420 -1 -
GHSARQCRA GAG_HV2RO 398 -1 -
GHSARQCRT Q03859 400 -1 -
GHLAKDCRG GAG_SIVA1 428 20 -
GHFAKDCRD GAG_SRV2 553 -1 -
GHTARNCKA Q87621 421 -1 -
GHFAKDCHE O41288 557 -1 -
GHLAKDCRS P89903 430 -1 -
GHLAKDCRG Q88098 430 -1 -
GHFKKDCRA Q64033 499 -1 -
GHFKKDCRA Q61577 467 -1 -
GHFKKDCRA Q61213 467 -1 -
GHFKKDCRA GAG_IPMA 467 -1 -
GHSARQCRA GAG_HV2G1 399 -1 -
GHLARNCRA P89686 418 -1 -
GHFARECTS O48829 289 -1 -
GHLAKDCRG GAG_SIVAT 427 20 -
GHTAKQCKG Q88142 401 -1 -
GHSARQCRA GAG_HV2KR 398 -1 -
GHTAKQCRA Q76633 397 -1 -
GHLARQCRQ GAG_VILV 394 -1 -
GHLARQCRQ GAG_VILVK 394 -1 -
GHLARQCRQ GAG_VILV2 394 -1 -
GHLARQCRQ GAG_VILV1 394 -1 -
GHQARQCRQ GAG_CAEVC 388 -1 -
GHLARACRQ Q03259 442 -1 -
GHISRDCPS HEXP_LEIMA 262 30 -
GHFAKNCHE GAG_MPMV 556 -1 -
GHFAKNCHE O56224 555 -1 -
GHFAKNCHE O56225 555 -1 -
GHFAKNCHE O92810 555 -1 -
GHLARFCKA Q87107 425 -1 -
GHIKKDCKE Q83391 534 -1 -
GHQARNCRS Q65590 430 -1 -
GHQARNCRS GAG_BIV27 430 -1 -
GHQARNCRS GAG_BIV06 430 -1 -
GHFARDCRG Q87763 423 -1 -
GHTARQCRA GAG_HV2D2 397 -1 -
GHFAKDCQN O44758 664 -1 -
GHFAKDCQN O76743 648 -1 -
GHIARXCKA Q72489 399 -1 -
GHLAKDCRG GAG_SIVAG 432 20 -
GHFARECPS Q42412 136 -1 -
GHLARQCRQ GAG_OMVVS 393 -1 -
GHTARQCKA Q74230 396 -1 -
GHWSRDCTQ Q90041 364 -1 -
GHWSRDCTQ Q82322 364 -1 -
GHWSRDCTQ Q82230 364 -1 -
GHWSRDCTQ O56621 364 -1 -
GHWSRDCTQ O56229 363 -1 -
GHWSRDCTQ O56228 363 -1 -
GHWSRDCTQ O56227 363 -1 -
GHWSRDCTQ GAG_HTL1M 364 -1 -
GHWSRDCTQ GAG_HTL1C 364 -1 -
GHWSRDCTQ GAG_HTL1A 364 -1 -
GHTARMCRQ O90272 403 -1 -
GHMARDCWA Q88284 544 -1 -
GHMARDCWA Q88285 544 -1 -
GHWSRDCTQ Q82440 370 -1 -
GHWSRDCTQ Q82343 370 -1 -
GHLASQCRQ Q84808 408 -1 -
GHWSRDCTQ Q08833 370 -1 -
GHWSRDCTQ GAG_HTLV2 370 -1 -
GHIKRDCKE GAG_MMTVC 534 -1 -
GHWSRDCTL O70641 369 -1 -
GHFARDCTS O65639 141 -1 -
GHIMANCPE GAG_HV2BE 419 -1 -
GHIRKDCKD O92804 533 -1 -
GHIRKDCKD O56220 533 -1 -
GHIRKDCKD GAG_MMTVB 534 -1 -
GHIAKDCKE O42395 76 -1 -
GHLARDCDH CNBP_HUMAN 105 -1 -
GHLARDCDH CNBP_MOUSE 98 -1 -
GHIQKDCTK O57348 121 -1 -
GHIQKDCTK P70000 127 -1 -
GHLARQCRE Q66971 384 -1 -
GHLARQCRE GAG_FIVPE 384 -1 -
GHIKKDCFH COPI_DROME 239 -1 -
GHIKKDCFH Q03728 239 -1 -
GHIKKDCFH Q08461 239 -1 -
GHIKKDCFH Q24280 239 -1 -
GHIKKDCFH Q24585 240 -1 -
GHWSKECPI O08752 169 -1 -
GHWSKECPI O02916 169 -1 -
GHLQRNCKS Q82851 395 -1 -
GHLQRNCKS Q82850 395 -1 -
GHLKKDCQA GAG_IPHA 456 -1 -
GHIAKDCKE Q91594 72 -1 -
GHIARFCRT POST_XENLA 422 -1 -
GHIAVNCTS BYR3_SCHPO 166 21 -
GHFAKNCHE GAG_SRV1 557 -1 -
GHVMAKCPE Q87955 422 -1 -
GHVMAKCPE Q87964 422 -1 -
GHLSSQCRA GAG_EIAVY 390 -1 -
GHLARQCKE Q66932 384 -1 -
GHLAANCWQ GAG_FIVT2 403 -1 -
GHMARDCSE Q41188 138 -1 -
GHFARDCSQ GRP2_NICSY 166 -1 -
GHYANQCRN POL_COYMV 888 -1 -
GHFARECPN Q66233 795 -1 -
GHLAAKCWQ GAG_FIVSD 403 -1 -
GHLAAKCWQ GAG_FIVWO 403 -1 -
GHFKRQCYK O82196 215 -1 -
GHWARDCPT GAG_BLVAU 354 -1 -
GHWARDCPT GAG_BLVJ 354 -1 -
GHWARDCPT O92811 354 -1 -
GHWARDCPT O92812 354 -1 -
GHWARDCPT Q85490 355 -1 -
GHLAARCWQ Q66963 403 -1 -
GHLARDCRK Q83009 664 -1 -
GHKEKDCME SLU7_YEAST 129 -1 -
GHLKKNCPV GAG2_HUMAN 300 -1 -
GHLKKNCPV Q69385 553 -1 -
GHLKKNCPV P87889 553 -1 -
GHFARDCTS Q38896 189 -1 -
GHYERECKN Q00833 353 -1 -
GHISPNCKK Q66275 748 -1 -
GHISPNCKK Q66283 748 -1 -
GHVATQCRG Q26692 286 -1 -
GHVKKDCYA O81903 264 -1 -
GHLKKSCPV Q96897 553 -1 -
GHVMANCPD GAG_HV2NZ 417 -1 -
GHFARECRN O23646 108 -1 -
GHFARECRN O81126 108 -1 -
GHLSRDCPS O46363 84 -1 -
GHFGDDCKE Q12476 171 -1 -
GHFGDDCAE YIH9_YEAST 182 -1 -
GHIARDCPV O74555 343 -1 -
GHFARECRR O23645 98 -1 -
GHFARECRR O81127 98 -1 -
GHLAKHCWG O23080 419 -1 -
GHWSRDCKQ O12272 359 -1 -
GHQKRDCFD Q21278 122 -1 -
GHYANKCTK Q98881 254 -1 -
EHSARQCRA Q88092 400 -1 -
GHYANRCTK O19137 226 -1 -
GHFIANCPD O24586 372 -1 -
GHISKDCPK YNZ5_YEAST 144 130 -
GHIASDCKF O08817 286 -1 -
GHIASDCKF Q14818 286 -1 -
GHIASDCKF Q14819 286 -1 -
GHIASDCKF Q15637 286 -1 -
GHIASDCKF Q15913 286 -1 -
GHIASDCKF Q64213 286 -1 -
GHIASDCKF Q92744 286 -1 -
GHIASDCKF Q92745 286 -1 -
GHFASECKN O72700 746 -1 -
GHMQYDCPE O17342 152 -1 -
GHLARDCPN O77233 160 -1 -
GHFSRECPN P90606 80 -1 -
GHRSNECPN Q27376 482 -1 -
GHRSNECPN Q22873 271 -1 -
GHLSRECPS Q23698 36 -1 -
GHRSIECPN GLH1_CAEEL 215 -1 -
GHRATECSA O01836 211 -1 -
GHRLNECRA Q12173 274 -1 -
GHRLNECRA Q99219 274 -1 -
GHRLNECRA Q99315 274 -1 -
GHRAAVCPQ GAG_JSRV 516 -1 -
GHYANKCPK Q24081 275 -1 -
GHYASSCHA Q26105 254 -1 -
GHYALQCWH O82331 276 -1 -
GHFSRACRS P91581 251 -1 -
GHYAYDCHR SFR7_HUMAN 113 -1 -
GHISSKCPE Q24262 294 -1 -
GHFSRDCNS Q12186 306 -1 -
GHHALNCWH O23450 257 -1 -
GHYATNCRS P91422 118 -1 -
GHYATNCRS YRD6_CAEEL 248 -1 -
GHTVQKCYK O81617 272 -1 -
GHKGDVCKS O65223 298 -1 -
GHKASRCMK O80793 330 -1 -
GHFSNQCPK Q24310 252 -1 -
GHWSKECPR Q94901 177 -1 -
GHFKRDCPN POLX_TOBAC 239 -1 -
RHLKKDCRV Q60505 469 -1 -
GHSLQDCKA Q17051 392 -1 -
GHISTYCPK O76571 617 -1 -
GHNALRCKK O22271 687 -1 -
GHNAKQCRK GAG_RSVP 542 25 -
GHYQAQCPK Q89810 516 -1 -
GHYQAQCPK Q86830 516 -1 -
GHYQAQCPK Q85613 516 -1 -
GHYQAQCPK Q85612 516 -1 -
GHYQAQCPK Q83131 516 -1 -
GHYQAQCPK Q64996 516 -1 -
GHYQAQCPK Q64992 514 -1 -
GHYQAQCPK Q64983 516 -1 -
GHYQAQCPK Q03853 516 -1 -
GHYQAQCPK Q03852 516 -1 -
GHYQAQCPK O92805 516 -1 -
GHYANECPN COAT_FMVD 418 -1 -
GHYANECPN Q84681 399 -1 -
GHYQAQCPK O92954 516 -1 -
GHYANECPN Q83168 420 -1 -
GHYANECPN Q66161 420 -1 -
GHYANECPN COAT_CAMVS 421 -1 -
GHYANECPN COAT_CAMVN 419 -1 -
GHYANECPN COAT_CAMVD 420 -1 -
GHYANECPN COAT_CAMVC 419 -1 -
GHYANECPN COAT_CERV 427 -1 -
GHYANECPK COAT_SOCMV 389 -1 -
GHTIQKCYK O23302 293 -1 -
GHYQAQCPK Q03858 516 -1 -
GHYVRECPV O22452 191 -1 -
GHTAIKCYN O48811 288 -1 -
GHLVAQCPT Q94885 386 -1 -
GHWKADCPN O92815 510 -1 -
GHTAAKCQN Y1R1_DROME 426 -1 -
GHWKADCPN Q88937 510 -1 -
GHIAWNCPK Q17329 684 -1 -
GHNSRTCPT O04544 12 -1 -
GHLVDKCYK O23588 306 -1 -
GHKATTCPH Q19336 213 -1 -
GHKSAGCAL O01418 648 -1 -
GHMARECLN O81453 277 -1 -
GHISRMCPK Q18244 177 -1 -
GHFIQACPV O93283 355 -1 -
GHWKRNCKK O23864 262 -1 -
GHVSAKCPG O49671 675 -1 -
GHTKAYCTL Q04134 391 -1 -
GHTVNNCPM O23411 265 -1 -
GHVRSACPE Q91591 219 -1 -
GHIAEKCYK O82607 300 -1 -
GHLAGACPK O80791 202 -1 -
GHTRQSCPK YTX1_XENLA 249 -1 -
GHTRAHCGA YEW7_YEAST 132 -1 -
GHTRTFCPQ O70157 993 -1 -
GHTRPFCPQ TOP3_HUMAN 991 -1 -
GHGSRNCNL O17451 293 -1 -
GHTVDKCYK O04549 285 -1 -
GHISRGCCN P91223 289 -1 -