| Literature References | 1. SAPP, M., VOLPERS, C., MULLER, M. AND STREECK, R.E.
Organization of the major and minor capsid proteins in human papillomavirus
type 33 virus-like particles.
J.GEN.VIROL. 76 2407-2412 (1995).
|
| Documentation | Papillomaviruses are members of the papovavirus superfamily. More than
70 different types of papillomavirus have been discovered in humans, some
of which have been shown to cause genital carcinomas and cutaneous
warts. The viruses contain a circular dsDNA genome surrounded by an
icosahedral capsid. Two proteins are involved in capsid formation: a major
(L1) and minor (L2) protein, in the approximate proportion 95:5%.
Experiments have indicated that intermolecular disulphide bonding is
responsible for cohesion of the L1 capsid proteins [1].
HPVCAPSIDL1 is an 11-element fingerprint that provides a signature for
the major L1 protein in the papillomavirus capsid. The fingerprint was
derived from an initial alignment of 18 sequences: the motifs were drawn
from conserved regions spanning virtually the full alignment length. Two
iterations on OWL29.6 were required to reach convergence, at which point a
true set comprising 106 sequence was identified. Several partial matches
were also found, all of which are fragments that lack one or more motifs:
AF001600 fails to match motif 11; those with 5 motifs match motifs 4-8; two
distinct groups of fragment match three motifs, namely 3-5 and 6-8; and
almost all with 2 motifs match motifs 9 and 10.
An update on SPTR37_9f identified a true set of 100 sequences.
|
| Sequence Titles | O00530 CAPSID PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 16.
O12670 MAJOR CAPSID PROTEIN - COLOBUS MONKEY PAPILLOMAVIRUS TYPE 2.
O37391 COMPLETE GENOME - COMMON CHIMPANZEE PAPILLOMAVIRUS 1.
O56939 E6, E7, E1, E2, E4, L2, AND L1 GENES - HUMAN PAPILLOMAVIRUS TYPE 75.
O56945 E6, E7, E1, E2, E4, L2, AND L1 GENES - HUMAN PAPILLOMAVIRUS TYPE 76.
O56951 E6, E7, E1, E2, E4, L2, AND L1 GENES - HUMAN PAPILLOMAVIRUS TYPE 77.
O56958 E6, E7, E1, E2, E4, L2, AND L1 GENES - HUMAN PAPILLOMAVIRUS TYPE 80.
O57126 L1 PROTEIN - PAPILLOMAVIRUS SYLVILAGI.
O90730 ORF L1 - HUMAN PAPILLOMAVIRUS TYPE 67.
O91953 LATE MAJOR CAPSID PROTEIN - HUMAN PAPILLOMAVIRUS.
O92282 LATE MAJOR CAPSID PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 16.
P88804 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS.
P89030 MAJOR CAPSID PROTEIN - OVINE PAPILLOMAVIRUS 1.
P89031 MAJOR CAPSID PROTEIN - OVINE PAPILLOMAVIRUS 2.
P89427 PUTATIVE L1 PROTEIN - HUMAN PAPILLOMAVIRUS.
Q81015 L1 CAPSID PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 16.
Q81017 L1 CAPSID PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 31.
Q81958 LATE PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 10.
Q81961 LATE PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 3.
Q81971 ORF PUTATIVE L1 - HUMAN PAPILLOMAVIRUS TYPE 5.
Q82003 1ST ATG - HUMAN PAPILLOMAVIRUS TYPE 7.
Q82004 2ND ATG - HUMAN PAPILLOMAVIRUS TYPE 7.
Q82010 E6, E7, E1, E2, E4, L2, AND L1 GENES - HUMAN PAPILLOMAVIRUS TYPE 7.
Q84359 L1 PROTEIN - MASTOMYS NATALENSIS PAPILLOMAVIRUS (MNPV).
Q96640 STRUCTURAL PROTEIN L1 - BOVINE PAPILLOMAVIRUS.
Q98003 L1 PROTEIN - HUMAN PAPILLOMAVIRUS TYPE 7.
VL1_BPV1 MAJOR CAPSID PROTEIN L1 - BOVINE PAPILLOMAVIRUS TYPE 1.
VL1_BPV2 MAJOR CAPSID PROTEIN L1 - BOVINE PAPILLOMAVIRUS TYPE 2.
VL1_BPV4 MAJOR CAPSID PROTEIN L1 - BOVINE PAPILLOMAVIRUS TYPE 4.
VL1_COPV MAJOR CAPSID PROTEIN L1 - CANINE ORAL PAPILLOMAVIRUS (COPV).
VL1_CRPVK MAJOR CAPSID PROTEIN L1 - COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN KANSAS) (CRPV).
VL1_HPV03 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 3.
VL1_HPV04 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 4.
VL1_HPV05 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 5.
VL1_HPV07 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 7.
VL1_HPV08 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 8.
VL1_HPV09 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 9.
VL1_HPV10 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 10.
VL1_HPV11 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 11.
VL1_HPV12 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 12.
VL1_HPV13 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 13.
VL1_HPV14 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 14.
VL1_HPV15 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 15.
VL1_HPV16 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 16.
VL1_HPV17 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 17.
VL1_HPV18 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 18.
VL1_HPV19 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 19.
VL1_HPV1A MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 1A.
VL1_HPV20 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 20.
VL1_HPV21 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 21.
VL1_HPV22 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 22.
VL1_HPV23 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 23.
VL1_HPV24 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 24.
VL1_HPV25 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 25.
VL1_HPV26 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 26.
VL1_HPV27 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 27.
VL1_HPV28 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 28.
VL1_HPV29 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 29.
VL1_HPV2A MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 2A.
VL1_HPV30 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 30.
VL1_HPV31 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 31.
VL1_HPV32 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 32.
VL1_HPV33 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 33.
VL1_HPV34 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 34.
VL1_HPV35 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 35.
VL1_HPV36 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 36.
VL1_HPV37 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 37.
VL1_HPV38 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 38.
VL1_HPV39 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 39.
VL1_HPV40 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 40.
VL1_HPV41 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 41.
VL1_HPV42 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 42.
VL1_HPV44 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 44.
VL1_HPV45 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 45.
VL1_HPV47 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 47.
VL1_HPV48 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 48.
VL1_HPV49 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 49.
VL1_HPV50 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 50.
VL1_HPV51 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 51.
VL1_HPV52 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 52.
VL1_HPV53 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 53.
VL1_HPV54 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 54.
VL1_HPV55 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 55.
VL1_HPV56 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 56.
VL1_HPV57 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 57.
VL1_HPV58 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 58.
VL1_HPV5B MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 5B.
VL1_HPV60 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 60.
VL1_HPV61 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 61.
VL1_HPV63 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 63.
VL1_HPV65 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 65.
VL1_HPV66 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 66.
VL1_HPV68 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 68.
VL1_HPV6A MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 6A, AND HUMAN PAPILLOMAVIRUS TYPE 6B.
VL1_HPV70 MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE 70.
VL1_HPVME MAJOR CAPSID PROTEIN L1 - HUMAN PAPILLOMAVIRUS TYPE ME180.
VL1_PAPVD MAJOR CAPSID PROTEIN L1 - DEER PAPILLOMAVIRUS.
VL1_PAPVE MAJOR CAPSID PROTEIN L1 - EUROPEAN ELK PAPILLOMAVIRUS (EEPV).
VL1_PCPV1 MAJOR CAPSID PROTEIN L1 - PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1.
VL1_RHPV1 MAJOR CAPSID PROTEIN L1 - RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1).
|