| Identifier | PITRANSFER [View Relations] [View Alignment]
|
| Accession | PR00391 |
| No. of Motifs | 5 |
| Creation Date | 03-JUL-1995 (UPDATE 07-JUN-1999) |
| Title | Phosphatidylinositol transfer protein signature |
| Database References |
INTERPRO; IPR001666
|
| Literature References | 1. LISCOVITCH, M. AND CANTLEY, L.C.
Signal transduction and membrane traffic: the PITP/phosphoinositide
connection.
CELL 81 659-662 (1995).
|
| Documentation | Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic
protein, thought to be involved in transport of phospholipids from their
site of synthesis in the endoplasmic reticulum and Golgi to other cell
membranes [1]. More recently, PITP has been shown to be an essential
component of the polyphosphoinositide synthesis machinery and is hence
required for proper signalling by epidermal growth factor and f-Met-Leu-Phe,
as well as for exocytosis. The role of PITP in polyphosphoinositide
synthesis may also explain its involvement in intracellular vesicular
traffic [1].
PITRANSFER is a 5-element fingerprint that provides a signature for
phosphatidylinositol transfer proteins. The fingerprint was derived from
an initial alignment of 4 sequences: the motifs were drawn from conserved
regions spanning the full alignment length. Two iterations on OWL26.0
were required to reach convergence, at which point a true set comprising
7 sequences was identified.
An update on SPTR37_9f identified a true set of 12 sequences.
|
| Summary Information | 12 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
|
| Composite Feature Index | | 5 | 12 | 12 | 12 | 12 | 12 | | 4 | 0 | 0 | 0 | 0 | 0 | | 3 | 0 | 0 | 0 | 0 | 0 | | 2 | 0 | 0 | 0 | 0 | 0 | | 1 | 2 | 3 | 4 | 5 |
|
| True Positives | O00562 O02434 O35954 O62119
PPI1_HUMAN PPI1_MOUSE PPI1_RABIT PPI1_RAT
PPI2_HUMAN PPI2_MOUSE PPI2_RAT RDGB_DROME |
| Sequence Titles | O00562 HOMOLOGUE OF DROSPHILA RETINAL DEGENERATION B GENE - HOMO SAPIENS (HUMAN).
O02434 RETINAL DEGENERATION B PROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
O35954 PHOSPHATIDYLINOSITOL MEMBRANE-ASSOCIATED (MEMBRANE-ASSOCIATED PHOSPHATIDYLINOSITOL TRANSFER PROTEIN) - MUS MUSCULUS (MOUSE).
O62119 M01F1.7 PROTEIN - CAENORHABDITIS ELEGANS.
PPI1_HUMAN PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA ISOFORM (PTDINS TRANSFER PROTEIN ALPHA) (PTDINSTP) (PI-TP-ALPHA) - HOMO SAPIENS (HUMAN).
PPI1_MOUSE PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA ISOFORM (PTDINS TRANSFER PROTEIN ALPHA) (PTDINSTP) (PI-TP-ALPHA) - MUS MUSCULUS (MOUSE).
PPI1_RABIT PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA ISOFORM (PTDINS TRANSFER PROTEIN ALPHA) (PTDINSTP) (PI-TP-ALPHA) - ORYCTOLAGUS CUNICULUS (RABBIT).
PPI1_RAT PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA ISOFORM (PTDINS TRANSFER PROTEIN ALPHA) (PTDINSTP) (PI-TP-ALPHA) - RATTUS NORVEGICUS (RAT).
PPI2_HUMAN PHOSPHATIDYLINOSITOL TRANSFER PROTEIN BETA ISOFORM (PTDINS TRANSFER PROTEIN BETA) (PTDINSTP) (PI-TP-BETA) - HOMO SAPIENS (HUMAN).
PPI2_MOUSE PHOSPHATIDYLINOSITOL TRANSFER PROTEIN BETA ISOFORM (PTDINS TRANSFER PROTEIN BETA) (PTDINSTP) (PI-TP-BETA) - MUS MUSCULUS (MOUSE).
PPI2_RAT PHOSPHATIDYLINOSITOL TRANSFER PROTEIN BETA ISOFORM (PTDINS TRANSFER PROTEIN BETA) (PTDINSTP) (PI-TP-BETA) - RATTUS NORVEGICUS (RAT).
RDGB_DROME RETINAL DEGENERATION B PROTEIN (PROBABLE CALCIUM TRANSPORTER RDGB) - DROSOPHILA MELANOGASTER (FRUIT FLY).
|
| Scan History | OWL26_0 2 100 NSINGLE
SPTR37_9f 2 13 NSINGLE
|
| Initial Motifs | Motif 1 width=20
Element Seqn Id St Int Rpt
EYQVGQLYSVAEASKNETGG PPIT_HUMAN 16 16 -
EYQVGQLYSVAEASKNETGG PPIT_RAT 16 16 -
EYQVGQLYSVAEASKNETGG A48214 9 9 -
EYQVGQLYSVAEASKNETGG JX0316 17 17 -
Motif 2 width=21
Element Seqn Id St Int Rpt
HEKAWNAYPYCRTVITNEYMK PPIT_HUMAN 83 47 -
HEKAWNAYPYCRTVITNEYMK PPIT_RAT 84 48 -
HEKAWNAYPYCRTVITNEYMK A48214 54 25 -
HEKAWNAYPYCRTIVTNEYMK JX0316 84 47 -
Motif 3 width=16
Element Seqn Id St Int Rpt
IETWHKPDLGTQENVH PPIT_HUMAN 110 6 -
IETWHKPDLGTQENVH PPIT_RAT 111 6 -
IETWHKPDLGTLENVH A48214 75 0 -
IETWHKPDLGTLENVH JX0316 111 6 -
Motif 4 width=16
Element Seqn Id St Int Rpt
FKWWGLQNKVENFIHK PPIT_HUMAN 199 73 -
FKWWGLQNKVENFIHK PPIT_RAT 200 73 -
FKWWGLQNKVENFIHK A48214 121 30 -
FKWWGLQSKVENFIQK JX0316 200 73 -
Motif 5 width=20
Element Seqn Id St Int Rpt
LFTNFHRQLFCWLDKWVDLT PPIT_HUMAN 219 4 -
LFTNFHRQLFCWLDKWVDLT PPIT_RAT 220 4 -
LFTNFHRQLFCWLDKWVDLT A48214 137 0 -
IFTNLHRQLFCWIDKWIDLT JX0316 220 4 -
|
| Final Motifs | Motif 1 width=20
Element Seqn Id St Int Rpt
EYQVGQLYSVAEASKNETGG PPI1_HUMAN 16 16 -
EYQVGQLYSVAEASKNETGG PPI1_RAT 16 16 -
EYQVGQLYSVAEASKNETGG PPI1_RABIT 16 16 -
EYQVGQLYSVAEASKNETGG PPI1_MOUSE 16 16 -
EYQVGQLYSVAEASKNETGG PPI2_HUMAN 16 16 -
EYQVGQLYSVAEASKNETGG PPI2_MOUSE 16 16 -
EYQVGQLYSVAEASKNETGG PPI2_RAT 16 16 -
EYQVAQLYMIQKKSREESSG O35954 16 16 -
EYQVAQLYMIQKKSREESSG O00562 16 16 -
EYRIAQLYMIAKKSREESHG O02434 16 16 -
EYRIAQLYMIAKKSREESHG RDGB_DROME 16 16 -
EYRIAQLYMIQKKSRLDSHG O62119 16 16 -
Motif 2 width=21
Element Seqn Id St Int Rpt
HEKAWNAYPYCRTVITNEYMK PPI1_HUMAN 83 47 -
HEKAWNAYPYCRTVITNEYMK PPI1_RAT 84 48 -
HEKAWNAYPYCRTVITNEYMK PPI1_RABIT 83 47 -
HEKAWNAYPYCRTVITNEYMK PPI1_MOUSE 84 48 -
HEKAWNAYPYCRTIVTNEYMK PPI2_HUMAN 83 47 -
HEKAWNAYPYCRTIVTNEYMK PPI2_MOUSE 83 47 -
HEKAWNAYPYCRTIVTNEYMK PPI2_RAT 83 47 -
EEESWNAYPYTRTRYTCPFVE O35954 85 49 -
EEESWNAYPYTRTRYTCPFVE O00562 85 49 -
EEEAMECYPYTRTRYTCPFVE O02434 85 49 -
EEEAMECYPYTRTRYTCPFVE RDGB_DROME 85 49 -
HEESWNAYPVTKTRYSTPMMD O62119 85 49 -
Motif 3 width=16
Element Seqn Id St Int Rpt
IETWHKPDLGTQENVH PPI1_HUMAN 110 6 -
IETWHKPDLGTQENVH PPI1_RAT 111 6 -
IETWHKPDLGTQENVH PPI1_RABIT 110 6 -
IETWHKPDLGTQENVH PPI1_MOUSE 111 6 -
IETWHKPDLGTLENVH PPI2_HUMAN 110 6 -
IETWHKPDLGTLENVH PPI2_MOUSE 110 6 -
IETWHKPDLGTLENVH PPI2_RAT 110 6 -
IETYYLPDGGQQPNVF O35954 111 5 -
IETYYLPDGGQQPNVF O00562 111 5 -
IETYYYPDNGYQDNVF O02434 111 5 -
IETYYYPDNGYQDNVF RDGB_DROME 111 5 -
VETLYFDDHGQQENVF O62119 111 5 -
Motif 4 width=16
Element Seqn Id St Int Rpt
FKWWGLQNKVENFIHK PPI1_HUMAN 199 73 -
FKWWGLQNKVENFIHK PPI1_RAT 200 73 -
FKWWGLQNKVENFIHK PPI1_RABIT 199 73 -
FKWWGLQNKVENFIHK PPI1_MOUSE 200 73 -
FKWWGLQSKVENFIQK PPI2_HUMAN 199 73 -
FKWWGLQSKVENFIQK PPI2_MOUSE 199 73 -
FKWWGLQSKVENFIQK PPI2_RAT 199 73 -
FRYWGMQAKIEQFIHD O35954 197 70 -
FRYWGMQAKIEQFIHD O00562 197 70 -
FRYWGMQTKLEKFIHD O02434 208 81 -
FRYWGMQTKLEKFIHD RDGB_DROME 208 81 -
FRYWGMQTRAERWIHD O62119 198 71 -
Motif 5 width=20
Element Seqn Id St Int Rpt
LFTNFHRQLFCWLDKWVDLT PPI1_HUMAN 219 4 -
LFTNFHRQLFCWLDKWVDLT PPI1_RAT 220 4 -
LFTNFHRQLFCWLDKWVDLT PPI1_RABIT 219 4 -
LFTNFHRQLFCWLDKWVDLT PPI1_MOUSE 220 4 -
IFTNFHRQLFCWIDKWIDLT PPI2_HUMAN 219 4 -
IFTNLHRQLFCWIDKWIDLT PPI2_MOUSE 219 4 -
IFTNLHRQLFCWIDKWIDLT PPI2_RAT 219 4 -
VMLRAHRQAWCWQDEWIELS O35954 218 5 -
VMLRAHRQAWCWQDEWTELS O00562 218 5 -
MMLRAHRQAWAWQDEWFGLT O02434 229 5 -
MMLRAHRQAWAWQDEWFGLT RDGB_DROME 229 5 -
TMMRAHRQAWAWQDEWTGLT O62119 219 5 -
|