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PR00227

Identifier
GEMCOATAL1  [View Relations]  [View Alignment]  
Accession
PR00227
No. of Motifs
4
Creation Date
12-JUL-1994  (UPDATE 07-JUN-1999)
Title
Geminivirus AL1 coat protein signature
Database References
PRINTS; PR00228 GEMCOATCLVL1; PR00229 GEMCOATMSVL1
PFAM; PF00799 Geminivirus_AL1
INTERPRO; IPR001191
Literature References
1. STANLEY, J., MARKHAM, P.G., CALLIS, R.J. AND PINNER, M.S.
The nucleotide sequence of an infectious clone of the geminivirus
beet curly top virus.
EMBO J. 5(8) 1761-1767 (1986).
 
2. MULLINEAUX, P. M., DONSON, J., MORRIS-KRSINICH, B.A., BOULTON, M. I.
AND DAVIE, J. W. 
The nucleotide sequence of maize streak virus DNA.
EMBO J. 3 3063-3068 (1984). 
 
3. LAZAROWITZ, S.G.
Infectivity and complete nucleotide sequence of the genome of a South 
African isolate of maize streak virus.
NUCLEIC ACIDS RES. 16 229-249 (1988).
 
4. LAZAROWITZ, S.G. AND LAZDINS, I.B.
Infectivity and complete nucleotide sequence of the cloned genomic
components of a bipartite squash leaf curl geminivirus with a broad
host range phenotype.
VIROLOGY 180 58-69 (1991).
 
5. KHEYR-POUR, A., BENDAHMANE, M., MATZEIT, V., ACCOTTO, G.P.,
CRESPI, S. AND GRONENBORN, B.
Tomato yellow leaf curl virus from Sardinia is a whitefly-transmitted
monopartite geminivirus.
NUCLEIC ACIDS RES. 19 6763-6769 (1991).
 
6. NAVOT, N., PICHERSKY, E., ZEIDAN, M., ZAMIR, D. AND CZOSNEK, H.
Tomato yellow leaf curl virus: a whitefly-transmitted geminivirus with
a single genomic component.
VIROLOGY 185 151-161 (1991).
 
7. COUTTS, R.H., COFFIN, R.S., ROBERTS, E.J. AND HAMILTON, W.D.
The nucleotide sequence of the infectious cloned DNA components of
potato yellow mosaic virus.
J.GEN.VIROL. 72(7) 1515-1520 (1991).

Documentation
Geminiviruses are characterised by a genome of circular single-stranded
DNA encapsidated in twinned (geminate) quasi-isometric particles, from
which the group derives its name [1]. Most geminiviruses can be divided
into 2 subgroups on the basis of host range and/or insect vector: i.e.
those that infect dicotyledenous plants and are transmitted by the same
whitefly species, and those that infect monocotyledenous plants and are
transmitted by different leafhopper vectors. The genomes of the whitefly-
transmitted cassava latent (CLV), tomato golden mosaic (TGMV) and bean
golden mosaic (BGMV) viruses possess a bipartite genome. By contrast, only
a single DNA component has been identified for the leafhopper-transmitted 
maize streak (MSV) and wheat dwarf (WDV) viruses [2,3]. Beet curly top
(BCTV), bean summer death and tobacco yellow dwarf viruses belong to a 
third possible subgroup. Like MSV and WDV, BCTV is transmitted by a 
specific leafhopper species, yet like the whitefly-transmitted gemini- 
viruses it has a host range confined to dicotyledenous plants.
 
Sequence comparison of the whitefly-transmitted squash leaf curl [4]
and tomato yellow leaf curl viruses [5,6] with the genomic components of
TGMV and BGMV reveals a close evolutionary relationship [4]. Amino acid
sequence alignments of potato yellow mosaic viral (PYMV) proteins with 
those encoded by other geminiviruses show that PYMV is closely related 
to geminiviruses isolated from the New World, especially in the putative 
coat protein gene regions [7].
 
GEMCOATAL1 is a 4-element fingerprint that provides a signature for the
geminivirus AL1 coat proteins. The fingerprint was derived from an initial
alignment of 8 sequences: the motifs were drawn from regions conserved in
both CLV and MSV AL1 coat proteins. Three iterations on OWL23.1 were
required to reach convergence, at which point a true set comprising
29 sequences was identified, including AL1 coat proteins from both 
leafhopper- and whitefly-transmitted geminiviruses.
 
An update on SPTR37_9f identified a true set of 79 sequences, and 1
partial match.
Summary Information
  79 codes involving  4 elements
1 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
479797979
31110
20000
1234
True Positives
O12280        O36264        O36624        O38544        
O39485 O39521 O39522 O40987
O41339 O55379 O56313 O56816
O56968 O56990 O57036 O71205
O71963 O72692 O72705 O72707
O72710 O72719 O72723 O72916
O73478 O73494 O73500 O73558
O73577 O91272 O91597 P87726
P89122 P89127 Q01731 Q65418
Q65438 Q67558 Q67568 Q67574
Q67591 Q67614 Q67620 Q68543
Q82676 Q83479 Q84370 Q88539
Q88549 Q88557 Q88885 Q88888
Q88949 Q89239 Q89822 Q96612
Q96704 Q98743 VAL1_ABMVW VAL1_BCTV
VAL1_BGMV VAL1_CLVK VAL1_CLVN VAL1_CSMV
VAL1_MSVK VAL1_MSVN VAL1_MSVS VAL1_PASVK
VAL1_PHUV VAL1_PYMVV VAL1_SLCV VAL1_TGMV
VAL1_TMOV VAL1_TYDVA VAL1_TYLCA VAL1_TYLCM
VAL1_TYLCU VAL1_TYLCV VAL1_WDV
True Positive Partials
Codes involving 3 elements
P89217
Sequence Titles
O12280      REP PROTEIN - TOMATO LEAF CURL GEMINIVIRUS.   
O36264 REPLICATION ASSOCIATED PROTEIN A - MAIZE STREAK VIRUS.
O36624 REPLICATION ASSOCIATED PROTEIN - TAINO TOMATO MOTTLE VIRUS.
O38544 REPLICATION ASSOCIATED PROTEIN - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
O39485 ORF16.4 - BEET CURLY TOP VIRUS (BCTV).
O39521 PUTATIVE GENES V1, V2, C1, C1:C2 - BEAN YELLOW DWARF VIRUS.
O39522 REPLICATION-ASSOCIATED PROTEIN - BEAN YELLOW DWARF VIRUS.
O40987 REPLICATION-ASSOCIATED PROTEIN A - MAIZE STREAK VIRUS.
O41339 HYPOTHETICAL 39.9 KD PROTEIN - TOMATO LEAF CURL GEMINIVIRUS.
O55379 REPLICATION-ASSOCIATED PROTEIN - COWPEA GOLDEN MOSAIC GEMINIVIRUS.
O56313 REPLICASE A - EGYPTIAN SUGARCANE STREAK VIRUS.
O56816 REPLICATION-ASSOCIATED PROTEIN - CHAYOTE MOSAIC VIRUS.
O56968 31.5 KD PROTEIN - MAIZE STREAK VIRUS.
O56990 REPLICASE - PAPAYA LEAF CURL VIRUS.
O57036 REPLICATION ASSOCIATED PROTEIN - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
O71205 REPLICATION-ASSOCIATED PROTEIN - POTATO YELLOW MOSAIC VIRUS.
O71963 REPLICATION ASSOCIATED PROTEIN - SIDA GOLDEN MOSAIC VIRUS.
O72692 C1 PROTEIN - BEET CURLY TOP VIRUS (BCTV).
O72705 PAKISTAN STRAIN COMPLETE SEQUENCE OF DNA-A - COTTON LEAF CURL VIRUS.
O72707 PAKISTAN STRAIN COMPLETE SEQUENCE OF DNA-A - COTTON LEAF CURL VIRUS.
O72710 PAKISTAN STRAIN COMPLETE SEQUENCE OF DNA-A - COTTON LEAF CURL VIRUS.
O72719 AC1 PROTEIN - COTTON LEAF CURL VIRUS.
O72723 AC1 PROTEIN - COTTON LEAF CURL VIRUS.
O72916 ORF C1 - MISCANTHUS STREAK VIRUS.
O73478 31.5 KD REPA PROTEIN - MAIZE STREAK VIRUS.
O73494 AC1 PROTEIN - OKRA YELLOW VEIN MOSAIC VIRUS.
O73500 AC1 PROTEIN - OKRA YELLOW VEIN MOSAIC VIRUS.
O73558 31.5 KD REPA PROTEIN - MAIZE STREAK VIRUS.
O73577 AC1 PROTEIN - COTTON LEAF CURL VIRUS.
O91272 REP PROTEIN 1 - TOMATO LEAF CURL GEMINIVIRUS.
O91597 AC1 PROTEIN - MUNGBEAN YELLOW MOSAIC VIRUS.
P87726 DNA B - BEAN GOLDEN MOSAIC VIRUS.
P89122 AC1 PROTEIN - SIDA GOLDEN MOSAIC VIRUS.
P89127 AC1 PROTEIN - SIDA GOLDEN MOSAIC VIRUS.
Q01731 REPLICATION PROTEIN AL1 - BEAN GOLDEN MOSAIC VIRUS.
Q65418 WORLAND STRAIN, COMPLETE GENOME - BEET CURLY TOP VIRUS (BCTV).
Q65438 ORF L1 - BEET CURLY TOP VIRUS (BCTV).
Q67558 PUTATIVE REPLICATIVE PROTEIN - BEAN DWARF MOSAIC VIRUS.
Q67568 COMPLETE GENOME - DIGITARIA STREAK VIRUS.
Q67574 PUTATIVE REPLICATIVE PROTEIN - BEAN GOLDEN MOSAIC VIRUS.
Q67591 ORF C1 - MISCANTHUS STREAK VIRUS.
Q67614 REPLICATIVE PROTEIN - TOMATO MOTTLE VIRUS.
Q67620 (V1-V2, C1-C4) - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
Q68543 MOVEMENT PROTEIN (V3), (V2), CAPSID C1 (V2) - HORSERADISH CURLY TOP VIRUS.
Q82676 ENCODING AR0 COMPLETE CDS - INDIAN CASSAVA MOSAIC VIRUS (ICMV).
Q83479 31.5 KD PROTEIN - MAIZE STREAK VIRUS.
Q84370 REPLICATION-ASSOCIATED PROTEIN - PANICUM STREAK VIRUS.
Q88539 COAT PROTEIN AV1, AV2, AV3, REPLICATION-ASSOCIATED PROTEIN AC1, AC2, AC3, AC4, AC5, BV1 AND BC1 GENES, COMPLETE CDS - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
Q88549 COAT PROTEIN AV1, AV2, AV3, REPLICATION-ASSOCIATED PROTEIN AC1, AC2, AC3, AC4 AND AC5 GENES, COMPLETE CDS - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
Q88557 C1 (REPLICATION-ASSOCIATED PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
Q88885 STRAIN TAMAULIPAS COMPONENT A, COMPLETE SEQUENCE - TEXAS PEPPER VIRUS.
Q88888 TOMOATO PSEUDO-CURLY TOP VIRUS COMPLETE DNA SEQUENCE - TOMATO PSEUDO-CURLY TOP VIRUS.
Q88949 (SICILY) - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
Q89239 REPLICATION ASSOCIATED PROTEIN - WHEAT DWARF VIRUS (WDV).
Q89822 34.9 KDA ORF - SUGARCANE STREAK VIRUS.
Q96612 AV1, AC3, AC2, AC1, AND AC4 GENES, COMPLETE CDS - ABUTILON MOSAIC VIRUS.
Q96704 REPLICASE ASSOCIATED PROTEIN - CABBAGE LEAF CURL VIRUS.
Q98743 REPLICATION-ASSOCIATED PROTEIN - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
VAL1_ABMVW AL1 PROTEIN - ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA).
VAL1_BCTV AL1 PROTEIN (40.8 KD PROTEIN) - BEET CURLY TOP VIRUS (BCTV).
VAL1_BGMV AL1 PROTEIN (40.2 KD PROTEIN) - BEAN GOLDEN MOSAIC VIRUS.
VAL1_CLVK AL1 PROTEIN (40.4 KD PROTEIN) - CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844).
VAL1_CLVN AL1 PROTEIN (40.4 KD PROTEIN) - CASSAVA LATENT VIRUS (STRAIN NIGERIAN).
VAL1_CSMV AL1 PROTEIN (33.2 KD PROTEIN) - CHLORIS STRIATE MOSAIC VIRUS (CSMV).
VAL1_MSVK AL1 PROTEIN (P1A PROTEIN) - MAIZE STREAK VIRUS (KENYAN ISOLATE) (MSV).
VAL1_MSVN AL1 PROTEIN (P1A PROTEIN) - MAIZE STREAK VIRUS (NIGERIAN ISOLATE) (MSV).
VAL1_MSVS AL1 PROTEIN (P1A PROTEIN) - MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE) (MSV).
VAL1_PASVK AL1 PROTEIN (ORF AC1) - PANICUM STREAK VIRUS (KENYAN ISOLATE).
VAL1_PHUV AL1 PROTEIN - PEPPER HUASTECO VIRUS (PHV).
VAL1_PYMVV AL1 PROTEIN - POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA).
VAL1_SLCV AL1 PROTEIN - SQUASH LEAF CURL VIRUS.
VAL1_TGMV AL1 PROTEIN - TOMATO GOLDEN MOSAIC VIRUS (TGMV).
VAL1_TMOV AL1 PROTEIN - TOMATO MOTTLE VIRUS (ISOLATE FLORIDA) (TMOV).
VAL1_TYDVA AL1 PROTEIN (C1 PROTEIN) - TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA) (TYDV).
VAL1_TYLCA AL1 PROTEIN (C1 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (STRAIN AUSTRALIA) (TYLCV).
VAL1_TYLCM AL1 PROTEIN (C1 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (STRAIN MARMANDE) (TYLCV).
VAL1_TYLCU AL1 PROTEIN (C1 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (STRAIN MURCIA) (TYLCV).
VAL1_TYLCV AL1 PROTEIN (C1 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
VAL1_WDV AL1 PROTEIN (PUTATIVE COMPOSITE PROTEIN) (C1 PROTEIN) - WHEAT DWARF VIRUS (WDV).

P89217 REP PROTEIN - TOMATO YELLOW VEIN STREAK GEMINIVIRUS.
Scan History
OWL23_2    3  100  NSINGLE    
OWL28_0 1 100 NSINGLE
SPTR37_9f 2 80 NSINGLE
Initial Motifs
Motif 1  width=16
Element Seqn Id St Int Rpt
NTFLTYPKCPENPEIA VAL1_MSVN 16 16 -
NTFLTYPKCPENPEIA VAL1_MSVS 16 16 -
NTFLTYSKCPLEPEFI VAL1_PASV 23 23 -
NTFLTYPKCPENPEIA VAL1_MSVK 16 16 -
NYFLTYPQCSLSKEES VAL1_TGMV 14 14 -
NIFLTYPQCSLSKEEA VAL1_BCTV 13 13 -
NYFLTYPQCSISKEEA VAL1_PYMVV 13 13 -
NYFLTYPRCTIPKEEA VAL1_BGMV 13 13 -

Motif 2 width=18
Element Seqn Id St Int Rpt
REAHKDGSLHLHALLQTE VAL1_MSVS 51 19 -
RETHTDGTWHCHALLQCI VAL1_PASV 58 19 -
RELHEDGQPHLHVLIQFE VAL1_TGMV 49 19 -
RELHEDGQPHLHVLLQLE VAL1_BCTV 48 19 -
RELHENGEPHLHVLIQFE VAL1_PYMVV 48 19 -
EERHDNGEPHLHALIQFE VAL1_BGMV 48 19 -
REAHKDGSLHLHALLQTE VAL1_MSVN 51 19 -
REAHKDGSLHLHALLQTE VAL1_MSVK 51 19 -

Motif 3 width=20
Element Seqn Id St Int Rpt
YHGNIQSAKSTDKVREYILK VAL1_PASV 91 15 -
FHPNIQRAKSSSDVKTYIDK VAL1_TGMV 88 21 -
FHPNIQRAKSSSDVKSYVDK VAL1_BCTV 87 21 -
FHPNIQGAKSSSDVKSYVEK VAL1_PYMVV 87 21 -
FHPNIQGAKSSSDVKEYIDK VAL1_BGMV 87 21 -
FHPNIQSAKSVNRVRDYILK VAL1_MSVN 84 15 -
FHPNIQSAKSVNRVRDYILK VAL1_MSVS 84 15 -
FHPNIQSAKSVNRVRDYILK VAL1_MSVK 84 15 -

Motif 4 width=20
Element Seqn Id St Int Rpt
HATSKAEYLSMIQKELPFDW VAL1_MSVS 146 42 -
HSTSKEEYLSMIQKELPFDW VAL1_MSVK 146 42 -
NASSKEEALQIIREKIPEKY VAL1_TGMV 140 32 -
HATSREEYLSLVQSSLPYDW VAL1_PASV 152 41 -
NATSLDQALQILKEEQPKDY VAL1_BCTV 139 32 -
NSGTKEAAMKIIKEKLPEKF VAL1_PYMVV 139 32 -
NADSIESALTILKEEQPKDY VAL1_BGMV 139 32 -
HATSKEEYLSMIQKELPFDW VAL1_MSVN 146 42 -
Final Motifs
Motif 1  width=16
Element Seqn Id St Int Rpt
NYFLTYPKCSLTKEEA O73500 12 12 -
NYFITYPKCSLTKEEA O72707 12 12 -
NYFITYPKCSLTKEEA O72710 12 12 -
NYFITYPQCSLTKEEA O72705 13 13 -
NYFITYPQCSLTKEEA O72719 13 13 -
NYFLTYPKCSLTKEET O72723 11 11 -
NYFLTYPKCSLTKEEA Q98743 13 13 -
NYFLTYPRCSLTKEEA Q82676 13 13 -
NYFLTYPKCSLTKEEA VAL1_TYLCA 13 13 -
NYFLTYPQCSLTKEEA Q67558 13 13 -
NYFLTYPNCSLSKEEA Q88888 14 14 -
NYFLTYPQCSLSKEEA VAL1_TMOV 13 13 -
NYFLTYPQCSLTKEEA O56816 13 13 -
NYFLTYPQCSLTKEEA P89127 13 13 -
NYFLTYPKCSLSKEEA O71205 12 12 -
NYFLTYPKCDLTKENA VAL1_TYLCM 13 13 -
NYFLTYPQCSLSKEEA Q67614 13 13 -
NYFLTYPNCSLSKEEA O38544 11 11 -
NYFLTYPQCSLTKDEA VAL1_ABMVW 13 13 -
NYFLTYPHCSLTKEEA O12280 13 13 -
NYFLTYPQCSLTKEEA O41339 13 13 -
NYFLTYPNCSLSKEEA VAL1_TYLCV 11 11 -
NYFLTYPNCSLSKEEA O57036 11 11 -
NYFLTYPQCSLSKEES VAL1_TGMV 14 14 -
NYFITYPTCSLTKKEA O73494 13 13 -
HYFLTFPKCSLSKEEA Q67620 13 13 -
NYFLTYPKCSLTKEEA Q88549 13 13 -
HYFLSFPKCSLSKEEA VAL1_TYLCU 13 13 -
NYFLTYPKCSLTKEEA Q88539 13 13 -
NIFLTYPQCSLSKEEA O39485 40 40 -
NIFLTYPQCSLSKEEA VAL1_BCTV 13 13 -
NYFLTYPQCSLSKEEA O36624 13 13 -
NIFATYPRCSLPKEEA O55379 13 13 -
NVFLTYPKCSIPKEHL VAL1_CLVK 12 12 -
NYFLTYPKCSLSKERH Q88557 13 13 -
NYLVTYPQCSLTKEEA O71963 13 13 -
NYFLTYPQYSLAKEVA Q96612 13 13 -
NVFLTYPNCSIPKEHL VAL1_CLVN 12 12 -
NYFLTYPQCSLTKEEA P89122 13 13 -
NYFLTYPQCSISKEER VAL1_PHUV 13 13 -
NYFLTYPQCSISKEEA VAL1_PYMVV 13 13 -
HYFLTFPKCCLTKEEA Q88949 13 13 -
NYFLTYPKCSLTKEEA O91272 13 13 -
NYFLTYPRCTIPKEEA P87726 13 13 -
NYFLTYPRCTIPKEEA VAL1_BGMV 13 13 -
NYFLTYPRCPIPKEEV Q01731 13 13 -
NYFLTYPRCPLRKEDA O91597 13 13 -
NYFLTYPQCSITKESA Q67574 13 13 -
NFFLTYPQCSVTKEDA Q65438 9 9 -
NFFLTYPQCSVTKEDA O72692 9 9 -
NIFLTYPRCSVIKEDA Q65418 13 13 -
NTFLTYPKCPENPEIA VAL1_MSVN 16 16 -
NTFLTYPKCPENPEIA O36264 16 16 -
NTFLTYPKCPENPEIA VAL1_MSVS 16 16 -
NTFLTYPKCPENPEIA VAL1_MSVK 16 16 -
NTFLTYPKCPENPEIA O73478 16 16 -
NTFLTYPKCPENPEIA O73558 16 16 -
NTFLTYPKCPENPEIA Q83479 16 16 -
NTFLTYPKCPENPEIA O56968 16 16 -
NIFLTYPRCDVPKEEV VAL1_SLCV 14 14 -
NIFLTYPKCPIPKEQM O56990 13 13 -
NIFLTFPKCPIPKEQM O73577 13 13 -
NIFLTYPQCDIPKDEA Q88885 14 14 -
NIFLTYPQCTIPKDEM Q68543 14 14 -
NTFLTYPQCPEQPEII O40987 16 16 -
YVFLTYPRCSSSAENL VAL1_TYDVA 17 17 -
NTFLTYSKCDHSPQLI Q67568 13 13 -
YLFLTYPQCTLEPQYA Q89239 15 15 -
NTFLTYSKCHLEPEAV O56313 22 22 -
YLFLTYPECTLEPQYA VAL1_WDV 15 15 -
NIFLTHLRCDIPKDEA Q96704 14 14 -
HVFLTYPRCPISPEEA VAL1_CSMV 40 40 -
NTFLTYSKCPLEPEFI Q84370 24 24 -
NTFLTYSRCPLEPEAV Q89822 22 22 -
YVFLTYPKCSSQRDDL O39521 14 14 -
YVFLTYPKCSSQRDDL O39522 14 14 -
NTFLTYSKCPLEPEFI VAL1_PASVK 23 23 -
QFFLTYPHCNLTPSEL O72916 27 27 -
QFFLTYPHCNLTPSEL Q67591 27 27 -

Motif 2 width=18
Element Seqn Id St Int Rpt
REFHEDGEPHLHVLIQFE O73500 47 19 -
RELHEDGTPHLHVLIQFE O72707 47 19 -
RELHEDGTPHLHVLIQFE O72710 47 19 -
RELHEDGSPHLHVLIQFE O72705 48 19 -
RELHEDGSPHLHVLIQFE O72719 48 19 -
RELHQNGEPHLHVLIQFE O72723 46 19 -
RELHEDGTPHLHVLIQFE Q98743 48 19 -
RELHENGEPHLHVLIQFE Q82676 48 19 -
RELHENGEPHLHVLIQFE VAL1_TYLCA 48 19 -
RELHEDGEPHLHVLIQFE Q67558 48 19 -
RELHENGEPHLHVLIQFE Q88888 49 19 -
RELHENGEPHLHVLVQFE VAL1_TMOV 48 19 -
RELHEDGQPHLHALIQFE O56816 48 19 -
RELHENGEPHLHVLIQFE P89127 48 19 -
RELHENGEPHLHVLVQFE O71205 47 19 -
RELHENGEPHLHILIQFE VAL1_TYLCM 48 19 -
RELHENGEPHLHVLVQFE Q67614 48 19 -
REFHENGEPHLHVLIQFE O38544 46 19 -
RELHENGEPHLHVLIQFE VAL1_ABMVW 48 19 -
RELHEDGAPHLHILIQFE O12280 48 19 -
RELHEDGQPHLHVLIQFE O41339 48 19 -
KELHENGEPHLHVLIQFE VAL1_TYLCV 46 19 -
REFHENGEPHLHVLIQFE O57036 46 19 -
RELHEDGQPHLHVLIQFE VAL1_TGMV 49 19 -
REFHENGEPHLHVLIQFE O73494 48 19 -
RELHEDGQPHLHMLIQFE Q67620 48 19 -
RELHDDGSPHIHVLIQFE Q88549 48 19 -
RELHEDGQPHLHMLIQFE VAL1_TYLCU 48 19 -
RELHEDGSPHIHVLIQFE Q88539 48 19 -
RELHEDGQPHLHVLLQLE O39485 75 19 -
RELHEDGQPHLHVLLQLE VAL1_BCTV 48 19 -
RELHENGEPHLHVLVQFE O36624 48 19 -
RELHEDGEPHLHVLLQFE O55379 48 19 -
RELHQNGEPHLHALIQFE VAL1_CLVK 47 19 -
RELHVDGEPHLHVLIQFE Q88557 48 19 -
RELHENGEPHLHVLLQFE O71963 48 19 -
RELHENGEPHLHVLIQFE Q96612 48 19 -
RELHQNGEPHLHALIQFE VAL1_CLVN 47 19 -
RDKHENGEPHQHVLIQFE P89122 48 19 -
KESHEDGQPHLHVLIQFE VAL1_PHUV 48 19 -
RELHENGEPHLHVLIQFE VAL1_PYMVV 48 19 -
RELHEDGQPHLHILMQFE Q88949 48 19 -
RELHEDGTPHIHVLIQFE O91272 48 19 -
EERHDNGEPHLHALIQFE P87726 48 19 -
EERHDNGEPHLHALIQFE VAL1_BGMV 48 19 -
EERHENGEPHLHALIQFE Q01731 48 19 -
RELHEDGEPHLHVLLQFE O91597 48 19 -
REIHENGEPHLHALIQFE Q67574 48 19 -
RELHENGEPHLHALIQFE Q65438 44 19 -
RELHDNGEPHLHALIQFE O72692 44 19 -
QEKHQDGSLHLHALIQFK Q65418 48 19 -
REAHKDGSLHLHALLQTE VAL1_MSVN 51 19 -
REAHKDGSLHLHALLQPE O36264 51 19 -
REAHKDGSLHLHALLQTE VAL1_MSVS 51 19 -
REAHKDGSLHLHALLQTE VAL1_MSVK 51 19 -
REAHKDGSLHLHALLQTE O73478 51 19 -
REAHKDGSLHLHALLQTE O73558 51 19 -
REAHKDGSLHLHALLQTE Q83479 51 19 -
REEHKDGSLHLHALLQTE O56968 51 19 -
REEHSDGSPHLHCLIQLS VAL1_SLCV 50 20 -
QEKHQDGSLHIHALIQFK O56990 48 19 -
QEKHQDGSLHIHALIQFK O73577 48 19 -
REEHSDGFPHLHCLIQLT Q88885 50 20 -
AERHADGTPHLHCLIQLS Q68543 50 20 -
REAHRDGNQCLHALIQTE O40987 51 19 -
TELHQDGTPHLHCLIQLD VAL1_TYDVA 52 19 -
SEHHADGSLHSHALVQTE Q67568 48 19 -
RELHEDGSPHLHVLVQNK Q89239 50 19 -
REAHADGSWHIHALAQSV O56313 57 19 -
RELHEDGSPHLHVLVQNK VAL1_WDV 50 19 -
REEHSDGSPFTHCLIQLS Q96704 50 20 -
REFHADGEPHLHAFVQLE VAL1_CSMV 75 19 -
RETHQDGTWHCHALLQCI Q84370 59 19 -
RETHEDGGYHIHVLAQSA Q89822 57 19 -
SELHQDGTTHYHALIQLD O39521 49 19 -
SELHQDGTTHYHALIQLD O39522 49 19 -
RETHTDGTWHCHALLQCI VAL1_PASVK 58 19 -
QEFHKDGDPHLHVLIQLN O72916 62 19 -
QEFHKDGDPHLHVLIQLN Q67591 62 19 -

Motif 3 width=20
Element Seqn Id St Int Rpt
FHPNIQGAKSSSDVKSYLEK O73500 86 21 -
FHPNIQGAKSSSDVKSYIEK O72707 86 21 -
FHPNIQGAKSSSDVKSYIEK O72710 86 21 -
FHPNIQGAKSSSDVKAYIDK O72705 87 21 -
FHPNIQGAKSSSDVKAYIDK O72719 87 21 -
FHPNIQGAKSSSDVKAYIDK O72723 85 21 -
FHPNIQGAKSSSDVKTYMEK Q98743 87 21 -
FHPNIQGAKSSSDVKSYIDK Q82676 87 21 -
FHPNIQGAKSSSDVKSYLEK VAL1_TYLCA 87 21 -
FHPNIQGAKSSSDVKSYIDK Q67558 87 21 -
FHPNIQGAKSSSDVNSYVDK Q88888 88 21 -
FHPNIQGAKSSSDVKSYIDK VAL1_TMOV 87 21 -
FHPNVQGAKSCSDVKSYIEK O56816 87 21 -
FHPNIQGAKSSSDVKSYIDK P89127 87 21 -
FHPNIQGAKSSSDVKSYIDK O71205 86 21 -
FHPNIQGAKSSSDVKSYIDK VAL1_TYLCM 87 21 -
FHPNIQGAKSSSDVKSYIDK Q67614 87 21 -
FHPNIQAAKSSTDVKTYVEK O38544 85 21 -
FHPNIQGAKSSSDVKSYIDK VAL1_ABMVW 87 21 -
FHPNIQGAKSSTDVKTYMEK O12280 87 21 -
FHPNIQRAKSSSDVKTYVEK O41339 87 21 -
FHPNIQAAKSSTDVKTYVEK VAL1_TYLCV 85 21 -
FHPNIQAAKSSTDVKTYVEK O57036 85 21 -
FHPNIQRAKSSSDVKTYIDK VAL1_TGMV 88 21 -
FHPNIQGVKSSSDVKSYIAK O73494 87 21 -
FHPNIQGAKSSSDVKSYIDK Q67620 87 21 -
FHPNIQGAKSASDVKAYIDK Q88549 87 21 -
FHPNIQGAKSSSDVKSYIDK VAL1_TYLCU 87 21 -
FHPNIQGAKSASDVKNYIAK Q88539 87 21 -
FHPNIQRAKSSSDVKSYVDK O39485 114 21 -
FHPNIQRAKSSSDVKSYVDK VAL1_BCTV 87 21 -
FHPNIQGAKSSSDVKTYITK O36624 87 21 -
FHPNIQGAKSSSDVKSYIEK O55379 87 21 -
FHPNIQGAKSSSDVKSYLDK VAL1_CLVK 86 21 -
FHPNIQKAKSSSDVKAYVEK Q88557 87 21 -
FHPNIQGAKSSSDVKSYIDK O71963 87 21 -
FHPNIQGAKSSSDVKSYIDK Q96612 87 21 -
FHPNIQGAKSSSDVKSYLDK VAL1_CLVN 86 21 -
FHPNIQGAKSSSDVKSYIDK P89122 87 21 -
FHPNIQGAKSSSDVKTYIDK VAL1_PHUV 87 21 -
FHPNIQGAKSSSDVKSYVEK VAL1_PYMVV 87 21 -
FHPNIQGAKSSSDVKSYIDK Q88949 87 21 -
FHPNIQGAKSASDCKAYIDK O91272 87 21 -
FHPNIQGAKSSSDVKEYIDK P87726 87 21 -
FHPNIQGAKSSSDVKEYIDK VAL1_BGMV 87 21 -
FHPNIQGAKSSSDVKAYIDK Q01731 87 21 -
YHPNVQAAKSASDVKSYMDK O91597 87 21 -
SHANIQSAKSSSDVKSYIEK Q67574 87 21 -
FHCNIQGAKSSSDVKSYVSK Q65438 83 21 -
FHCNIQGAKSSSDVKSYVSK O72692 83 21 -
FHPNFQGAKSASDVKQYIEK Q65418 87 21 -
FHPNIQSAKSVNRVRDYILK VAL1_MSVN 84 15 -
FHPNIQSAKSVNRVRDYILK O36264 84 15 -
FHPNIQSAKSVNRVRDYILK VAL1_MSVS 84 15 -
FHPNIQSAKSVNRVRDYILK VAL1_MSVK 84 15 -
FHPNIQSAKSVNRVRDYILK O73478 84 15 -
FHPNIQSAKSVNRVRDYILK O73558 84 15 -
FHPNIQSAKSVNRVRDYILK Q83479 84 15 -
FHPNIQSAKSVNRVRDYILK O56968 84 15 -
FHPNIQAAKDTNAVKNYITK VAL1_SLCV 89 21 -
FNPNFQGAKSSSDVKSYIEE O56990 87 21 -
FHPNFQGAKSSSDVKSYIEK O73577 87 21 -
FHPNVQASKDANAVKNYITK Q88885 89 21 -
FHPNVQSAKDTNAVKNYITK Q68543 89 21 -
FHPNIQSAISPNKVRDYITK O40987 84 15 -
NHPNIQPAKNSEQVLEYISK VAL1_TYDVA 85 15 -
FHPNIQSAKSVNKVRTYILK Q67568 81 15 -
FHPNIQAAKDCNQVRDYITK Q89239 90 22 -
FHPNIQSAKSADRVKEYVLK O56313 90 15 -
FHPNIQAAKDCNQVRDYITK VAL1_WDV 90 22 -
FHPNIQAAKDTNAVKNYITK Q96704 89 21 -
FHPNIQAARQPASTLKYCMK VAL1_CSMV 108 15 -
YHPNIQSAKSTDKVREYILK Q84370 92 15 -
FHPNIQSAKSANKVRAYAMK Q89822 90 15 -
NHPNIQPARNSKQVLDYISK O39521 82 15 -
NHPNIQPARNSKQVLDYISK O39522 82 15 -
YHGNIQSAKSTDKVREYILK VAL1_PASVK 91 15 -
FHPNIQPVRDAEKVFGYISK O72916 95 15 -
FHPNIQPVRDAEKVFGYISK Q67591 95 15 -

Motif 4 width=20
Element Seqn Id St Int Rpt
NAGSKSEALRVIKELAPKDY O73500 138 32 -
NAGSKSEALRVIKELAPKDF O72707 138 32 -
NAGSKSEALRVIKELAPKDF O72710 138 32 -
NAGSKSEALRVIKELAPKDF O72705 139 32 -
NAGSKSEALRVIKELAPKDF O72719 139 32 -
NAGSKSEALRVIKELAPKDF O72723 137 32 -
NAGSKIEALNILREKAPKDY Q98743 139 32 -
NSGSKSEALKILRELAPRDY Q82676 139 32 -
NTGSKSEALNVLRELAPKDY VAL1_TYLCA 139 32 -
NAGSAEQALRIIKEEQPQHF Q67558 139 32 -
NRSSKEEALQIIKEKLPKDF Q88888 140 32 -
NAGSVQSALAVLREEQPKDF VAL1_TMOV 139 32 -
NAGSAEAALAIIKEKLPKDY O56816 139 32 -
NAGSVLGAMTVLKEEQPKDF P89127 139 32 -
NAASAAEALQIIKEEQPQHF O71205 138 32 -
NAGSKSQALDVIKELAPRDY VAL1_TYLCM 139 32 -
NASSVQSALAVLREEQPKDF Q67614 139 32 -
NSGSKSEALNILKEKAPKDY O38544 137 32 -
NAGDVQSALNILKEEQPKDY VAL1_ABMVW 139 32 -
NSGSKAEALNILREKAPKDF O12280 139 32 -
NSGTVSEALNILREEQPKDF O41339 139 32 -
NSGSKSEALNILKEKAPKDY VAL1_TYLCV 137 32 -
NSSSKSEALNILKEKAPKDY O57036 137 32 -
NASSKEEALQIIREKIPEKY VAL1_TGMV 140 32 -
NAGSKSEALRVIKELAPKDF O73494 139 32 -
NAGRKSEALDVIKELAPRDY Q67620 139 32 -
NTGNKEDALKVLKELAPKDY Q88549 139 32 -
NAGSKSEALDVIKELAPRDY VAL1_TYLCU 139 32 -
NTGNKDDALRVLKELAPKDY Q88539 139 32 -
NATSLDQALQILKEEQPKDY O39485 166 32 -
NATSLDQALQILKEEQPKDY VAL1_BCTV 139 32 -
NAGNVQSAMAVLKEEQPKDF O36624 139 32 -
NSGSPTKALNIVKELAPKDF O55379 139 32 -
NSGSKSEALNVIRELVPKDF VAL1_CLVK 138 32 -
NSGSKAAALDILREKAPKDF Q88557 139 32 -
NADSVQSALAVLREEQPKDF O71963 139 32 -
NAIDVQSALNILKEEQPKDY Q96612 139 32 -
NSGSKSEALNVIRELVPKDF VAL1_CLVN 138 32 -
NATCAEEALRIIREEQPQHF P89122 139 32 -
NSASAEEALQIIKEEQPQHF VAL1_PHUV 139 32 -
NSGTKEAAMKIIKEKLPEKF VAL1_PYMVV 139 32 -
NARSKSEALDVIKQLAPRDY Q88949 139 32 -
NTGNKEDAMKVLKELAPKDY O91272 139 32 -
NADSIESALTILKEEQPKDY P87726 139 32 -
NADSIESALTILKEEQPKDY VAL1_BGMV 139 32 -
NADSIESALTILKEEQPKDY Q01731 139 32 -
NSGSKLQALNILREKAPKDY O91597 139 32 -
NASSKEEAMQIIKEKLPEKF Q67574 139 32 -
NAGNALEALQIIREKLPEKY Q65438 135 32 -
NAGNALEALQIIREKLPEKY O72692 135 32 -
NAGNAAEALQIIREKLPEKY Q65418 139 32 -
HATSKEEYLSMIQKELPFDW VAL1_MSVN 146 42 -
HATSKEEYLSMIQKELPFDW O36264 146 42 -
HATSKAEYLSMIQKELPFDW VAL1_MSVS 146 42 -
HSTSKEEYLSMIQKELPFDW VAL1_MSVK 146 42 -
HSTSKEEYLSMIQKEFPYDW O73478 146 42 -
HSTSKEEYLSMIQKEFPYDW O73558 146 42 -
HSTSKEEYLSMIQKEFPYDW Q83479 146 42 -
HSTSKEEYLSMIQKEFPYDW O56968 146 42 -
NAGSAGEALDIIKAGDPKTF VAL1_SLCV 137 28 -
NAGSADAALAINREKLPKDF O56990 139 32 -
NAGSKEAAMAIIREKLPEKF O73577 139 32 -
NAASAGEALDIIKAGDPKTF Q88885 137 28 -
NAGGVREALDIIKAGDPKTF Q68543 137 28 -
HATSKQEYLSMVQKSLPYDW O40987 146 42 -
TATSKEEYLDMIKDEFPHEW VAL1_TYDVA 134 29 -
HATSKEEYLSMVQKALPYDW Q67568 141 40 -
SSSSREEFLSMVCNRFPFEW Q89239 144 34 -
HSTSKQEYLSMLQKALPYEW O56313 151 41 -
SSSSREEFLSMVCNRFPFEW VAL1_WDV 144 34 -
NAGCVEERLAIIRAGVPKTF Q96704 137 28 -
NATSRDEYLSMVRKSFPFEW VAL1_CSMV 163 35 -
HATSRAEYLSLVQTSLPYDW Q84370 153 41 -
HSTNKQEYLSMIQKALPYEW Q89822 151 41 -
TATSKEEYLDMIKEEFPHEW O39521 131 29 -
TATSKEEYLDMIKEEFPHEW O39522 131 29 -
HATSREEYLSLVQSSLPYDW VAL1_PASVK 152 41 -
SSTNRNEYLSMVRKEFPFDW O72916 147 32 -
SSTNRNEYLSMVRKEFPFDW Q67591 147 32 -