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PR00234

Identifier
HIV1MATRIX  [View Relations]  [View Alignment]  
Accession
PR00234
No. of Motifs
5
Creation Date
03-FEB-1995  (UPDATE 07-JUN-1999)
Title
HIV-1 matrix protein signature
Database References

PFAM; PF00540 gag_p17; PF00607 gag_p24
INTERPRO; IPR000071
Literature References
1. MASSIAH, M.A., STARICH, M.R., PASCHALL, C., SUMMERS, M.F.,
CHRISTENSEN, A.M. AND SUNDQUIST, W.I.
Three dimensional structure of the human immunodeficiency virus
type 1 matrix protein.
J.MOL.BIOL. 244 198-223 (1994).

Documentation
The HIV-1 matrix protein forms an icosahedral shell associated with
the inner membrane of the mature virus [1]. The functions of the protein
include anchoring the transmembrane envelope protein on the surface
of the virus; assisting in viral penetration; transporting the pro-
viral integration complex across the nuclear envelope; and localising
the assembling virion to the cell membrane.
 
The structure of the protein comprises 5 alpha-helices, a short 3.10
helix and a 3-stranded mixed beta-sheet [1]. The first 3 helices and the
3.10 region pack around the fourth helix to form a compact globular
domain that is capped by the beta-sheet. The C-terminal helix projects
away from the sheet to expose C-terminal residues essential for early
steps in the HIV-1 infectious cycle. Basic residues, implicated in
membrane binding and nuclear localisation functions, cluster around
an extruded cationic loop that connects strands 1 and 2.
 
HIV1MATRIX is a 5-element fingerprint that provides a signature for
HIV-1 matrix proteins. The fingerprint was derived from an initial
alignment of 7 sequences: the motifs were drawn from highly-conserved
regions spanning the full length of the mature protein, motif 2
including the basic residues implicated in membrane binding. Three
iterations of OWL25.1 were required to reach convergence, at which
point a true set comprising 70 sequences was identified. A single
partial match was also found, a matrix protein fragment lacking the
final 2 motifs.
 
An update on SPTR37_9f identified a true set of 206 sequences, and 38
partial matches.
Summary Information
 206 codes involving  5 elements
37 codes involving 4 elements
1 codes involving 3 elements
0 codes involving 2 elements
Composite Feature Index
5206206206206206
4137373736
311100
200000
12345
True Positives
GAG_HV1A2     GAG_HV1B1     GAG_HV1B5     GAG_HV1BR     
GAG_HV1C4 GAG_HV1EL GAG_HV1H2 GAG_HV1J3
GAG_HV1JR GAG_HV1LW GAG_HV1MA GAG_HV1MN
GAG_HV1N5 GAG_HV1ND GAG_HV1OY GAG_HV1PV
GAG_HV1RH GAG_HV1U4 GAG_HV1Y2 GAG_HV1Z2
GAG_HV2BE GAG_HV2CA GAG_HV2D1 GAG_HV2D2
GAG_HV2G1 GAG_HV2KR GAG_HV2NZ GAG_HV2RO
GAG_HV2SB GAG_HV2ST GAG_SIVA1 GAG_SIVAG
GAG_SIVAI GAG_SIVAT GAG_SIVCZ GAG_SIVGB
GAG_SIVM1 GAG_SIVMK GAG_SIVMS GAG_SIVS4
GAG_SIVSP O12157 O40215 O41414
O41782 O41783 O41791 O41792
O41911 O42039 O57058 O71261
O71271 O71965 O71970 O89290
O89291 O89926 O89933 O89939
O89958 O89962 O90056 O90064
O90072 O90081 O90090 O90098
O90157 O90158 O90172 O90272
O90288 O90316 O91079 O91080
O92294 O92651 O92652 O92878
O92879 O92883 O92884 O92888
O92891 O92892 O92894 O92897
O92898 O92900 O92901 O93020
O93085 O93112 O93182 O93215
P88141 P88150 P89153 P89692
P89903 P89971 P90071 P90072
P90073 P90239 P90248 P90255
P90256 P90257 P90258 P90259
Q03259 Q03859 Q07386 Q71812
Q72489 Q72497 Q72596 Q72604
Q72616 Q72628 Q72631 Q72978
Q72986 Q73329 Q73367 Q74084
Q74230 Q74452 Q74806 Q74834
Q75001 Q75754 Q76580 Q76621
Q76633 Q77372 Q77602 Q77603
Q77604 Q77690 Q77697 Q77698
Q77699 Q77700 Q77701 Q77804
Q77805 Q78240 Q78565 Q78566
Q79070 Q79350 Q79351 Q79354
Q79356 Q79360 Q79361 Q79362
Q79448 Q79449 Q79450 Q79451
Q79665 Q79791 Q79898 Q79899
Q80181 Q80193 Q80306 Q80307
Q80363 Q80364 Q80365 Q80366
Q80621 Q80622 Q80623 Q80624
Q80625 Q80626 Q80627 Q80628
Q80629 Q80630 Q80631 Q80632
Q80634 Q87107 Q87621 Q87705
Q87763 Q87955 Q87964 Q88000
Q88001 Q88003 Q88015 Q88092
Q88098 Q88134 Q88142 Q89464
Q89503 Q97058
True Positive Partials
Codes involving 4 elements
O40523 O40524 O40525 O40526
O40527 O40528 O40529 O40530
O40531 O40532 O40533 O40534
O40535 O40536 O40537 O40538
O40539 O40540 O40541 O40542
O40543 O40544 O40545 O40546
O40547 O40548 O40549 O40550
O40551 O40552 O40553 O40554
O42030 O42057 O42079 O42088
Q72597
Codes involving 3 elements
Q77601
Sequence Titles
GAG_HV1A2   GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE) (HIV-1). 
GAG_HV1B1 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) (HIV-1).
GAG_HV1B5 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) (HIV-1).
GAG_HV1BR GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) (HIV-1).
GAG_HV1C4 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE) (HIV-1).
GAG_HV1EL GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) (HIV-1).
GAG_HV1H2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) (HIV-1).
GAG_HV1J3 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) (HIV-1).
GAG_HV1JR GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) (HIV-1).
GAG_HV1LW GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (LW12.3 ISOLATE) (HIV-1).
GAG_HV1MA GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) (HIV-1).
GAG_HV1MN GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) (HIV-1).
GAG_HV1N5 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 ISOLATE) (HIV-1).
GAG_HV1ND GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) (HIV-1).
GAG_HV1OY GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) (HIV-1).
GAG_HV1PV GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) (HIV-1).
GAG_HV1RH GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) (HIV-1).
GAG_HV1U4 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN UGANDAN / ISOLATE U455) (HIV-1).
GAG_HV1Y2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (YU-2 ISOLATE) (HIV-1).
GAG_HV1Z2 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, P2, P7, P1, P6] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 ISOLATE) (HIV-1).
GAG_HV2BE GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) (HIV-2).
GAG_HV2CA GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) (HIV-2).
GAG_HV2D1 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) (HIV-2).
GAG_HV2D2 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) (HIV-2).
GAG_HV2G1 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE GHANA-1) (HIV-2).
GAG_HV2KR GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE KR) (HIV-2).
GAG_HV2NZ GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) (HIV-2).
GAG_HV2RO GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) (HIV-2).
GAG_HV2SB GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) (HIV-2).
GAG_HV2ST GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P16; CORE PROTEIN P26] - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) (HIV-2).
GAG_SIVA1 GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) (SIV-AGM).
GAG_SIVAG GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) (SIV-AGM).
GAG_SIVAI GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM / CLONE GRI-1) (SIV-AGM).
GAG_SIVAT GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) (SIV-AGM).
GAG_SIVCZ GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P18, P25, AND P16] - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
GAG_SIVGB GAG POLYPROTEIN [CONTAINS: CORE PROTEINS P17, P24, AND P15] - SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1).
GAG_SIVM1 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) (SIV-MAC).
GAG_SIVMK GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) (SIV-MAC).
GAG_SIVMS GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (STM ISOLATE) (SIV-MAC).
GAG_SIVS4 GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) (SOOTY MANGABEY).
GAG_SIVSP GAG POLYPROTEIN [CONTAINS: CORE PROTEIN P17; CORE PROTEIN P24] - SIMIAN IMMUNODEFICIENCY VIRUS (PBJ14/BCL-3 ISOLATE) (SOOTY MANGABEY).
O12157 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40215 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41414 MATRIX PROTEIN P17 (GAG) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41782 GAG-POL FUSION - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41783 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41791 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41792 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O41911 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O42039 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O57058 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O71261 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O71271 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O71965 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O71970 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89290 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89291 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89926 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89933 TRUNCATED GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89939 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89958 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O89962 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90056 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90064 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90072 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90081 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90090 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90098 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90157 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90158 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90172 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90272 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O90288 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O90316 GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
O91079 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O91080 GAG-POL FUSION POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92294 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92651 GAG-POL POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92652 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92878 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92879 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92883 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92884 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92888 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92891 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92892 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92894 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92897 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92898 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92900 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O92901 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93020 GAG POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93085 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93112 CORE PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93182 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O93215 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P88141 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
P88150 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P89153 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
P89692 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P89903 FROM AFRICAN GREEN MONKEY, TANTALUS SPECIES (SIVTAN) PROVIRAL DNA, COMPLETE GENOME - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
P89971 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90071 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90072 GAG-POL FUSION POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90073 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90239 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90248 GAG-POL POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90255 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90256 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90257 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90258 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
P90259 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q03259 GAG POLYPROTEIN (CORE PROTEINS P17, P24, AND P15) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q03859 GAG POLYPROTEIN (CORE PROTEINS P17, P24, AND P15) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q07386 GAG POLYPROTEIN (CORE PROTEINS P17 AND P24) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q71812 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72489 CLADE B, PROVIRAL CLONE - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72497 GAG POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72596 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72604 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72616 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72628 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72631 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72978 IMMUNODEFICIENCY VIRUS HIV-1, CLONE ACH320.2A.1.2, COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72986 IMMUNODEFICIENCY VIRUS HIV-1, CLONE ACH320.2A.2.1, COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q73329 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q73367 GAG POLYPROTEIN PRECURSOR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74084 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74230 CORE PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
Q74452 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74806 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q74834 COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q75001 GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q75754 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q76580 CORE PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q76621 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
Q76633 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
Q77372 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77602 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77603 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77604 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77690 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77697 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77698 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77699 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77700 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77701 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77804 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q77805 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q78240 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q78565 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q78566 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79070 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79350 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79351 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79354 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79356 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79360 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79361 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79362 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79448 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79449 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79450 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79451 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79665 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79791 ISOLATE NY5, COMPLETE GENOME. INFECTIOUS SINGLE LTR MOLECULAR PROVIRAL GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79898 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q79899 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80181 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80193 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80306 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80307 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80363 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80364 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80365 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80366 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80621 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80622 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80623 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80624 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80625 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80626 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80627 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80628 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80629 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80630 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80631 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80632 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q80634 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q87107 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87621 GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87705 CLONE 1A11 SEQUENCE - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87763 (SIV) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87955 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q87964 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88000 (32H RE-ISOLATE OF SIVMAC 251, CLONE J12) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88001 (32H RE-ISOLATE OF SIVMAC 251, CLONE J2) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88003 (32H RE-ISOLATE OF SIVMAC 251, CLONE J8) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88015 GAG POLYPROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV), AND SIMIAN-HUMAN IMMUNODEFICIENCY VIRUS.
Q88092 (32H RE-ISOLATE OF SIVMAC 251, CLONE J3) GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88098 (CLONE 2) (ENV) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88134 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q88142 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q89464 GAG PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
Q89503 GABONESE ISOLATE VI354, GAG - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q97058 STRAIN CM240, COMPLETE PROVIRAL GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.

O40523 P17-GAG GENE (ID GAG-A11) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40524 P17-GAG GENE (ID GAG-A13) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40525 P17-GAG GENE (ID GAG-A14) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40526 P17-GAG GENE (ID GAG-A15) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40527 P17-GAG GENE (ID GAG-A16) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40528 P17-GAG GENE (ID GAG-A19) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40529 P17-GAG GENE (ID GAG-A21) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40530 P17-GAG GENE (ID GAG-A22) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40531 P17-GAG GENE (ID GAG-A23) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40532 P17-GAG GENE (ID GAG-A24) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40533 P17-GAG GENE (ID GAG-A25) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40534 P17-GAG GENE (ID GAG-A27) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40535 P17-GAG GENE (ID GAG-A28) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40536 P17-GAG GENE (ID GAG-A31) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40537 P17-GAG GENE (ID GAG-A35) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40538 P17-GAG GENE (ID GAG-A36) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40539 P17-GAG GENE (ID GAG-A37) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40540 P17-GAG GENE (ID GAG-A38) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40541 P17-GAG GENE (ID GAG-B11) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40542 P17-GAG GENE (ID GAG-B12) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40543 P17-GAG GENE (ID GAG-B14) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40544 P17-GAG GENE (ID GAG-B15) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40545 P17-GAG GENE (ID GAG-B18) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40546 P17-GAG GENE (ID GAG-B22) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40547 P17-GAG GENE (ID GAG-B26) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40548 P17-GAG GENE (ID GAG-B27) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40549 P17-GAG GENE (ID GAG-B29) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40550 P17-GAG GENE (ID GAG-B38) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40551 P17-GAG GENE (ID GAG-B39) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40552 P17-GAG GENE (ID GAG-B41) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40553 P17-GAG GENE (ID GAG-B46) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O40554 P17-GAG GENE (ID GAG-B49) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O42030 P17-GAG GENE (ID GAG-A18) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O42057 P17-GAG GENE (ID GAG-B48) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O42079 P17-GAG GENE (ID GAG-B17) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
O42088 P17-GAG GENE (ID GAG-B28) - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Q72597 GAG POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.

Q77601 GAG PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
Scan History
OWL25_1    3  100  NSINGLE    
SPTR37_9f 2 246 NSINGLE
Initial Motifs
Motif 1  width=17
Element Seqn Id St Int Rpt
RASVLSAGELDKWEKIR GAG_HV1Y2 3 3 -
RASVLSGGELDRWEKIR GAG_HV1B5 3 3 -
RASVLSGGELDKWEKIR GAG_HV1A2 3 3 -
RASVLSGGELDKWEKIR GAG_HV1W2 3 3 -
RASVLSGGKLDEWEKIR HIVUG270 4 4 -
RASVLTGGKLDRWEKVR GAG_SIVCZ 4 4 -
RASVLSGGKLDTWERIR GAG_HV1ND 3 3 -

Motif 2 width=19
Element Seqn Id St Int Rpt
RPGGKKQYRLKHIVWASRE GAG_HV1Y2 21 1 -
RPGGNKKYKLKHLVWASRE HIVUG270 22 1 -
RPGGKKKYRLKHIVWASRE GAG_HV1W2 21 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1A2 21 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1B5 21 1 -
RPGGKKKYALKHLIWASRE GAG_HV1ND 21 1 -
RPGGRKRYMMKHLVWASRE GAG_SIVCZ 22 1 -

Motif 3 width=16
Element Seqn Id St Int Rpt
ERFAVNPGLLETSEGC GAG_HV1W2 41 1 -
ERFALNPGLLETSEGC HIVUG270 42 1 -
ERFAVNPGLLETSEGC GAG_HV1A2 41 1 -
ERFAVNPGLLETSEGC GAG_HV1B5 41 1 -
ERFAVDPGLLETSEGC GAG_HV1Y2 41 1 -
ERFTLNPGLLETSEGC GAG_HV1ND 41 1 -
ERFACDPGLMESKEGC GAG_SIVCZ 42 1 -

Motif 4 width=20
Element Seqn Id St Int Rpt
TGSEEIRSLYNTVATLYCVH GAG_HV1ND 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1W2 69 12 -
TGSEEVKSLFNTVATLYCVH HIVUG270 70 12 -
TGSEGLRSLFNTLAVLWCIH GAG_SIVCZ 70 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1A2 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1B5 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1Y2 69 12 -

Motif 5 width=14
Element Seqn Id St Int Rpt
HQRIDVKDTKEALE GAG_HV1A2 88 -1 -
HERIKVADTKEALD HIVUG270 89 -1 -
HQRIEIKDTKEALD GAG_HV1B5 88 -1 -
HQKIEVKDTKEALE GAG_HV1Y2 88 -1 -
HERIEVKDTKEAVE GAG_HV1ND 88 -1 -
HSDITVEDTQKALE GAG_SIVCZ 89 -1 -
HQRIEKKDTKEALD GAG_HV1W2 88 -1 -
Final Motifs
Motif 1  width=17
Element Seqn Id St Int Rpt
RASVLSGGELDRWEKIR Q74806 4 4 -
RASVLSGGKLDAWEKIR P89692 4 4 -
RASVLSGGKLDAWEKIR P90248 4 4 -
RASVLSGGELDRWEKIR Q73367 4 4 -
RASVLSGGKLDAWEKIR GAG_HV1MA 3 3 -
RASVLSGGELDRWEKIR Q80366 4 4 -
RASVLSGGKLDSWEKIR O90157 4 4 -
RASVLSGGKLDSWEKIR O90158 4 4 -
RASVLTGGKLDSWEKIR Q80623 4 4 -
RASVLSGGKLDKWEKIR Q75754 4 4 -
RASVLSGGELDRWEKIR GAG_HV1J3 3 3 -
RASVLSGGKLDSWEKIR Q79451 4 4 -
RASVLSGGKLDAWEKIR P90072 4 4 -
RASVLSGGKLDAWEKIR P90073 4 4 -
RASVLSGGELDKWEKIR GAG_HV1A2 3 3 -
RASVLSGGELDKWEKIR Q74834 4 4 -
RASVLSGGELDRWEKIR GAG_HV1B1 3 3 -
RASVLSGGELDRWEKIR GAG_HV1B5 3 3 -
RASVLSGGELDRWEKIR GAG_HV1BR 3 3 -
RASVLSGGELDRWEKIR GAG_HV1H2 3 3 -
RASVLSGGELDRWEKIR GAG_HV1PV 3 3 -
RASVLSGGKLDAWEKIR O41414 4 4 -
RASVLSGGELDRWEKIR O42039 4 4 -
RASVLSGGKLDRWEKIR Q74084 4 4 -
RASVLSGGKLDRWEKIR Q78240 4 4 -
RASVLSGGKLDRWEKIR GAG_HV1LW 3 3 -
RASVLSGGKLDRWEKIR Q79899 4 4 -
RASVLSGGKLDAWEKIR GAG_HV1Z2 3 3 -
RASVLSGGELDKWEKIR Q72986 4 4 -
RASVLSGGKLDAWEKIR Q74452 4 4 -
RASVLSGGELDKWEKIR Q77690 4 4 -
RASVLSGGELDRWEKIR P89971 4 4 -
RASVLSGGKLDRWEKIR O40215 4 4 -
RASVLSGGKLDAWEKIR Q80632 4 4 -
RASVLSGGKLDAWEKIR Q79360 4 4 -
RASILSGGGLDRWEKIR O93020 4 4 -
RASVLSGGQLDAWEKIR Q72604 4 4 -
RASVLSGGKLDAWEKIR Q80306 4 4 -
RASVLSGGELDKWEKIR GAG_HV1OY 3 3 -
RASVLSGGELDRWEKIR Q72628 4 4 -
RASVLSGGELDRWEKIR Q72631 4 4 -
RASVLSGGKLDAWEKIR Q79351 4 4 -
RASVLSGGELDKWEKIR GAG_HV1N5 3 3 -
RASVLSGGELDKWEKIR Q72497 4 4 -
RASVLSGGKLDKWEKIR Q80625 4 4 -
RASVLSGGELDRWEKIR O92878 4 4 -
RASVLSGGELDRWEKIR O92879 4 4 -
RASVLSGGKLDAWERIR Q79450 4 4 -
RASVLSGGKLDRWEKIR Q71812 4 4 -
RASVLSGGELDKWEKIR Q79791 4 4 -
RASILSGGELDRWEKIR O92891 4 4 -
RASILSGGELDRWEKIR O92892 4 4 -
RASVLSGGDLDRWEKIR O71970 4 4 -
RASVLSGGKLDAWEKIR O41791 4 4 -
RASVLSGGKLDAWEKIR O41792 4 4 -
RASVLSGGQLDRWEKIR O93085 4 4 -
RASVLSGGKLDKWEKIR Q77603 4 4 -
RASVLSGGKLDAWEKIR O89926 4 4 -
RASMLSGGELDKWEKIR Q72489 4 4 -
RASVLSGGKLDSWEKIR O89962 4 4 -
RASVLSGGELDRWEKIR GAG_HV1JR 3 3 -
RASVLSGGKLDAWEKIR Q79350 4 4 -
RASVLSGGKLDAWEKIR Q79354 4 4 -
RASVLSGGDLDRWEKIR O71965 4 4 -
RASVLSGGKLDAWEKIR O93182 4 4 -
RASVLSGGKLDAWEKIR O93215 4 4 -
RASILSGGKLDAWEKIR P88150 4 4 -
RASILSGGKLDAWEKIR P90071 4 4 -
RASVLSGGKLDKWEKIR P90239 4 4 -
RASVLSGGKLDAWEKIR Q80629 4 4 -
RASVLSGGKLDTWEKIR Q79361 4 4 -
RASVLSGGELDKWEKIR Q77604 4 4 -
RASVLSGGKLDAWEKIR Q97058 4 4 -
RASVLSGGKLDSWEKIR O89958 4 4 -
RTSVLSGGKLDAWEKIR Q79362 4 4 -
RASVLSGGKLDAWEKIR Q77699 4 4 -
RASVLSGGKLDAWEKIR Q77697 4 4 -
RASVLSGGKLDAWEKIR Q80627 4 4 -
RASVLSGGRLDAWEKIR Q77698 4 4 -
RASVLSGGKLDAWEKIR Q80307 4 4 -
RASVLSGGKLDKWEKIR GAG_HV1EL 3 3 -
RASVLSGGKLDEWEKIR Q80364 4 4 -
RASVLSGEELDRWEKIR O92897 4 4 -
RASVLSGEELDRWEKIR O92898 4 4 -
RASVLSGGKLDAWEKIR O89290 4 4 -
RASVLSGGKLDAWEKIR O89291 4 4 -
RASVLSGGELDKWEKIR O90172 4 4 -
RASVLSGGQLDRWEKIR Q80181 4 4 -
RASVLSGGKLDAWEKIR Q77701 4 4 -
RASVLSGGELDRWEKIR Q72616 4 4 -
RASVLSGGQLDAWEKIR Q72596 4 4 -
RASVLSGGELDRWEKIR GAG_HV1MN 3 3 -
RASVLSGGKLDEWEKIR Q79449 4 4 -
RASVLSGGKLDTWEKIR Q80628 4 4 -
RASVLSGGKLDSWEKIR Q77804 4 4 -
RASVLSAGELDKWEKIR GAG_HV1Y2 3 3 -
RASVLSGGELDRWERIR Q79898 4 4 -
RASILSGGKLDSWEKIR Q77700 4 4 -
RASVLSGGELDRWEKIR GAG_HV1C4 3 3 -
RASVLSGGKLDTWEKIR Q79448 4 4 -
RASVLSGGKLDEWEKIR Q80365 4 4 -
RASVLSGGQLDAWERIR Q78565 4 4 -
RASVLSGGKLDEWEKIR O41782 4 4 -
RASVLSGGKLDEWEKIR O41783 4 4 -
RASVLSGGELDRWEKIR Q77602 4 4 -
RASVLSGGELDRWEKIR O90288 4 4 -
RASXLSGGKLDAWEKIR O89933 4 4 -
RASILSGGELDRWEKIR O71271 4 4 -
RASILSGGELDRWEKIR O92894 4 4 -
RASVLSGGELDRWEKIQ Q72978 4 4 -
RASVLSGGKLDAWEKIR P90256 4 4 -
RASVLSGGKLDKWEKIR GAG_HV1RH 3 3 -
RASILSGGKLDRWEKIR O71261 4 4 -
RASILSGGKLDRWEKIR O92888 4 4 -
RASILSGGKLDRWEKIR O92900 4 4 -
RASILSGGKLDRWEKIR O92901 4 4 -
RASILSGGKLDRWEKIR Q73329 4 4 -
RASILRGGKLDKWEKIR O90090 4 4 -
RASVLSGGKLDAWEKIR Q80631 4 4 -
RASVLSGGKLDTWEKIR O93112 4 4 -
RASVLRGGKLDAWEKIR P90258 4 4 -
RASVLSGGKLDDWEKIQ Q78566 4 4 -
RASVLSGKKLDSWEKIR GAG_HV1U4 3 3 -
RASVLSGGKLDAWEKIR Q79070 4 4 -
RASVLSGGELDRWERIR O92883 4 4 -
RASVLSGGELDRWERIR O92884 4 4 -
RASVLSGGKLDAWEKIR P90259 4 4 -
RASVLSGGKLDQWEKIR Q80624 4 4 -
RASVLSGGKLDAWEKIR P90257 4 4 -
RASVLSGGRLDAWEKIR Q80630 4 4 -
RASVLSGGKFDAWEKIR O92651 4 4 -
RASVLSGGKFDAWEKIR O92652 4 4 -
RASVLSGGKLDTWERIR GAG_HV1ND 3 3 -
RASVLSGGKLDAWEKIR Q80634 4 4 -
RASVLTGGKLDAWEKIR O89939 4 4 -
RASILRGGKLDKWEKIR O90098 4 4 -
RASILRGGKLDKWEKIR O90064 4 4 -
RASVLSGGKLDAWEKIR Q80622 4 4 -
RASILRGGKLDAWERIR Q80193 4 4 -
RASILRGGKLDKWEKIR Q76580 4 4 -
RASILRGGKLDKWEKIR O90072 4 4 -
RASILRGGKLDTWEKIR P90255 4 4 -
RASILRGEKLDKWEKIR O90081 4 4 -
RASVLSGGKLDEWEKIQ Q79356 4 4 -
RASILSGGKLDAWKRIR Q89503 4 4 -
RASILSAGELDKWERVR O92294 4 4 -
RASVLSGGKLDAWEKIQ Q80621 4 4 -
RASVLRGGKLDTWEKIK Q80363 4 4 -
RASILRGEKLDAWEKIK Q77805 4 4 -
RASILRGEKLDKWERIR O90056 4 4 -
RASILRGEKLDAWEKIK Q75001 4 4 -
RASILRGGKLDAWERIK O12157 4 4 -
RASILRGGKLDTWERIK Q80626 4 4 -
RASVLTGGKLDQWESIY O91079 4 4 -
RASVLTGGKLDQWESIY O91080 4 4 -
RNSVLSGKKADELEKIR Q87955 4 4 -
RNSVLSGKKADELEKIR Q87964 4 4 -
RNSVLSGKKADELEKIR Q88134 4 4 -
RNSVLSGKKADELEKIR Q89464 4 4 -
RNSVLSGKKADELEKIR GAG_SIVSP 4 4 -
RNSVLSGKKADELEKIR GAG_SIVM1 4 4 -
RNSVLSGKKADELEKIR Q88092 4 4 -
RNSVLSGKKADELEKIR Q88003 4 4 -
RNSVLSGKKADELEKIR Q88001 4 4 -
RNSVLSGKKADELEKIR Q88000 4 4 -
RNSVLSGKKADELEKIR Q07386 4 4 -
RNSVLSGKKADELEKIR Q03859 4 4 -
RNSVLSGKKADELEKIR O41911 4 4 -
RNSVLRGKKADELEKIR P88141 4 4 -
RNSVLSGKKADELEKIR O57058 4 4 -
RNSVLRGKKADELEKIR GAG_HV2ST 4 4 -
RASVLTGGKLDRWEKVR GAG_SIVCZ 4 4 -
RNSVLRGKKADELEKVR GAG_HV2CA 4 4 -
RSSVLRGKKADELEKVR Q76621 4 4 -
RNSVLRGKKADELEKIR GAG_HV2NZ 4 4 -
RNSVLSGKKADELEKIR Q87705 4 4 -
RNSVLSGKKADELEKIR Q88015 4 4 -
RNSVLSGKKADELEKIR O90316 4 4 -
RNAVLSGKKADELEKIR GAG_SIVMK 4 4 -
RSSVLSGKKADELEKVR GAG_SIVMS 4 4 -
RSSVLSGKKADELEKVR Q88142 4 4 -
RNSVLRGKKADELEKIR GAG_HV2G1 4 4 -
KNSVLRGKKADELEKIR GAG_HV2SB 4 4 -
RNSVLRGKKADELEKVR GAG_HV2BE 4 4 -
RSSVLSGKKTDELEKVR Q76633 4 4 -
RGSVLSGKKTDELEKVR GAG_HV2D2 4 4 -
RNSVLRGKKADELEKVR GAG_HV2D1 4 4 -
RASVLTGSKLDAWERIR Q79665 4 4 -
RSSVLRGKKVDELEKIR GAG_HV2KR 4 4 -
RNSVLRGKKADELERIR GAG_HV2RO 4 4 -
RGSVLSGKKTDELEKVR Q74230 4 4 -
RNSVLSGKEADELEKVR GAG_SIVS4 4 4 -
RNSVLSGKEADELEKVR P89153 4 4 -
GSSALSGRKLDQFEHIR Q87763 4 4 -
SASVLTGSKLDAWEQIR Q77372 4 4 -
GHSALSGRNLDTFEKIR P89903 4 4 -
GASVLRGEKLDTWESIR Q87621 4 4 -
SNSVLSGRKLDAFESVR Q87107 4 4 -
ATSALNRRQLDQFEKIR GAG_SIVAT 4 4 -
ATSALKGRQLDQFEKIR Q88098 4 4 -
GHSALSGRSLDTFEKIR GAG_SIVAI 4 4 -
ATSALNRRQLDEFEHIR GAG_SIVA1 4 4 -
ATSALNRRQLDKFEHIR GAG_SIVAG 4 4 -
GNSALLGTDLDKFEKIR GAG_SIVGB 4 4 -
GSAILTGRELDRYEKIR Q03259 5 5 -
GNSVLSRQIEKDFCSVR O90272 4 4 -

Motif 2 width=19
Element Seqn Id St Int Rpt
RPGGKKKYRLKHIVWASRE Q74806 22 1 -
RPGGKKKYRLKHLVWASRE P89692 22 1 -
RPGGKKKYRLKHLVWASRE P90248 22 1 -
RPGGKKKYKLKHIVWASRE Q73367 22 1 -
RPGGKKKYRLKHLVWASRE GAG_HV1MA 21 1 -
RPGGKKKYKLKHIVWASRE Q80366 22 1 -
RPGGKKKYKLKHIVWASRE O90157 22 1 -
RPGGKKKYKLKHIVWASRE O90158 22 1 -
RPGGKKKYRLKHIVWASRE Q80623 22 1 -
RPGGKKKYRLKHIVWASRE Q75754 22 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1J3 21 1 -
RPGGKKKYRLKHLVWASRE Q79451 22 1 -
RPGGKKKYKMKHLVWASRE P90072 22 1 -
RPGGKKKYKMKHLVWASRE P90073 22 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1A2 21 1 -
RPGGKKKYQLKHIVWASRE Q74834 22 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1B1 21 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1B5 21 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1BR 21 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1H2 21 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1PV 21 1 -
RPGGKKKYRLKHLVWASRE O41414 22 1 -
RPGGKKKYKLKHIVWASRE O42039 22 1 -
RPGGKKKYKLKHIVWASRE Q74084 22 1 -
RPGGKKKYKLKHIVWASRE Q78240 22 1 -
RPGGKKKYKLKHIVWASRE GAG_HV1LW 21 1 -
RPGGKKKYQLKHIVWASRE Q79899 22 1 -
RPGGKKKYRLKHLVWASRE GAG_HV1Z2 21 1 -
RPGGKKRYKLKHIVWASRE Q72986 22 1 -
RPGGKKKYRLKHLVWASRE Q74452 22 1 -
RPGGKKKYKLKHIVWASRE Q77690 22 1 -
RPGGNKKYKLKHIVWASRE P89971 22 1 -
RPGGKKKYKLKHIVWASRE O40215 22 1 -
RPGGKKKYRLKHLVWASRE Q80632 22 1 -
RPGGKKKYRMKHLVWASRE Q79360 22 1 -
RPGGKKKYRLKHLVWASRE O93020 22 1 -
RPGGKKKYRLKHIVWASRE Q72604 22 1 -
RPGGRKKYRLKHLVWASRE Q80306 22 1 -
RPGGKKKYQLKHIVWASRE GAG_HV1OY 21 1 -
RPEGKKRYKLKHIVWASRE Q72628 22 1 -
RPEGKKRYKLKHIVWASRE Q72631 22 1 -
RPGGKKKYRLKHLVWASRE Q79351 22 1 -
RPGGKKQYKLKHIVWASRE GAG_HV1N5 21 1 -
RPGGKKQYKLKHIVWASRE Q72497 22 1 -
RPGGKKQYRLKHLVWASRE Q80625 22 1 -
RPGGKKQYRLKHIVWASRE O92878 22 1 -
RPGGKKQYRLKHIVWASRE O92879 22 1 -
RPGGKKKYRMKHLVWASRE Q79450 22 1 -
RPGGKKKYKLKHIVWASRE Q71812 22 1 -
RPGGKKQYRLKHIVWASRE Q79791 22 1 -
RPGGKKKYQLKHIVWASRE O92891 22 1 -
RPGGKKKYQLKHIVWASRE O92892 22 1 -
RPGGKKKYMLKHIVWASRE O71970 22 1 -
RPGGKKKYRMKHLVWASRE O41791 22 1 -
RPGGKKKYRMKHLVWASRE O41792 22 1 -
RPGGKKKYRLKHLVWASRE O93085 22 1 -
RPGGKKRYQLKHIVWASRE Q77603 22 1 -
RPGGKKKYRLKHLVWASRE O89926 22 1 -
RPGGKKKYRLKHLVWASRE Q72489 22 1 -
RPAGKKKYRLKHLVWASRE O89962 22 1 -
RPGGKKKYRLKHIVWASRE GAG_HV1JR 21 1 -
RPGGKKKYRIKHLVWASRE Q79350 22 1 -
RPGGKKKYRMKHLVWASRE Q79354 22 1 -
RPGGKKKYMLKHIVWASRE O71965 22 1 -
RPGGKKKYRLKHLVWASRE O93182 22 1 -
RPGGKKKYRLKHLVWASRE O93215 22 1 -
RPGGKKQYRMKHLVWASRE P88150 22 1 -
RPGGKKQYRMKHLVWASRE P90071 22 1 -
RPGGKKQYKLKHIVWASRE P90239 22 1 -
RPGGRKKYRMKHLVWASRE Q80629 22 1 -
RPGGKKKYKLKHLVWASRE Q79361 22 1 -
RPGGKKAYKLKHIVWASRE Q77604 22 1 -
RPGGRKKYRLKHLVWASRE Q97058 22 1 -
RPGGKKKYRLKHLVWASRE O89958 22 1 -
RPGGNKRYKLKHIVWASRE Q79362 22 1 -
RPGGKKKYRMKHLIWAGRE Q77699 22 1 -
RPGGKKKYRLKHLVWASRE Q77697 22 1 -
RPGGKKKYRMKHLVWASRE Q80627 22 1 -
RPGGKKKYKLKHLVWASRE Q77698 22 1 -
RPGGRKKYKMKHLVWASRE Q80307 22 1 -
RPGGKKKYRLKHIVWASRE GAG_HV1EL 21 1 -
RPGGNKKYKLKHLVWASRE Q80364 22 1 -
RPGGRKKYQLKHIVWASRE O92897 22 1 -
RPGGRKKYQLKHIVWASRE O92898 22 1 -
RPGGKKKYRLKHLVWASRE O89290 22 1 -
RPGGKKKYRLKHLVWASRE O89291 22 1 -
RPGGKKLYKLKHIIWASRE O90172 22 1 -
RPGGKKKYKLKHIVWASRE Q80181 22 1 -
RPGGKKKYRLKHLVWASRE Q77701 22 1 -
RPGGKKKYQLKHIVLASRE Q72616 22 1 -
RPGGKKKYRLKHIVWASME Q72596 22 1 -
RPGGKKKYKLKHVVWASRE GAG_HV1MN 21 1 -
RPGGKKKYRMKHLVWASRE Q79449 22 1 -
RPGGSKKYRLKHLVWASRE Q80628 22 1 -
RPGGKKKYRLKHLVWASRE Q77804 22 1 -
RPGGKKQYRLKHIVWASRE GAG_HV1Y2 21 1 -
RPGGKKKYKLKHIVWASRE Q79898 22 1 -
RPGGRKQYRLKHLVWASRE Q77700 22 1 -
RPGGKKQYRLKHIVWASRK GAG_HV1C4 21 1 -
RPGGKKKYRMKHLVWASRE Q79448 22 1 -
RPGGNKKYKLKHIVWASRE Q80365 22 1 -
RPGGKKKYQLKHIVWASRE Q78565 22 1 -
RPGGKKKYRLKHLVWASRE O41782 22 1 -
RPGGKKKYRLKHLVWASRE O41783 22 1 -
RPGGKKKYRLKHVVWASRE Q77602 22 1 -
RPGGKKKYKLKHVIWASRE O90288 22 1 -
TPGGKKKYRLKHLVWASRE O89933 22 1 -
RPGGKKKYQLKHIVWASRE O71271 22 1 -
RPGGKKKYQLKHIVWASRE O92894 22 1 -
RPGGSQRYKLKHIVWASRE Q72978 22 1 -
RPGGKKQYRMKHLVWASRE P90256 22 1 -
RPRGKKRYKLKHIVWASRE GAG_HV1RH 21 1 -
RPGGKKKYKLKHIVWASRE O71261 22 1 -
RPGGKKKYKLKHIVWASRE O92888 22 1 -
RPGGKKKYKLKHIVWASRE O92900 22 1 -
RPGGKKKYKLKHIVWASRE O92901 22 1 -
RPGGKKKYKLKHIVWASRE Q73329 22 1 -
RPGGKKHYMLKHLVWASRE O90090 22 1 -
RPGGKKKYRLKHLVWASRE Q80631 22 1 -
RPGGNKKYRLKHLVWASRE O93112 22 1 -
RPGGKKQYRIKHLVWASRE P90258 22 1 -
RPGGTKRYKLKHIVWASRE Q78566 22 1 -
RPGGNKKYRLKHLVWASRE GAG_HV1U4 21 1 -
RPGGKKKYRLKHLVWASRE Q79070 22 1 -
RPRGKKKYQLKHIVWASRE O92883 22 1 -
RPRGKKKYQLKHIVWASRE O92884 22 1 -
RPGGKKQYRMKHLVWASRE P90259 22 1 -
RPGKSKKYRLKHIVWASRE Q80624 22 1 -
RPGGKKQYRMKHLVWASRE P90257 22 1 -
RPGGKKQYRLKHLVWASRE Q80630 22 1 -
RPGGKKKYRMKHLIWASRE O92651 22 1 -
RPGGKKKYRMKHLIWASRE O92652 22 1 -
RPGGKKKYALKHLIWASRE GAG_HV1ND 21 1 -
RPGGRKKYKMKHLIWASRE Q80634 22 1 -
RPGGRKSYKIKHLVWASRE O89939 22 1 -
RPGGKKHYMLKHLVWASRE O90098 22 1 -
RPGGKKRYMLKHLVWASRE O90064 22 1 -
RPGGKKQYRIKHLVWASRE Q80622 22 1 -
RPGGKKHYMIKHLVWASRE Q80193 22 1 -
RPGGKKHYMIKHLVWASRE Q76580 22 1 -
RPGGKKHYMIKHLVWASRE O90072 22 1 -
RPGGSKRYMIKHLVWASRE P90255 22 1 -
RPGGKKHYMLKHLVWASRE O90081 22 1 -
RPGGHKKYKLKHIVWASRE Q79356 22 1 -
RPGGKKKYQIKHIVWASRK Q89503 22 1 -
RPGGKKKYRLKHLVWASRE O92294 22 1 -
RPGGKKKYRMKHLVWASRE Q80621 22 1 -
RPGGKKCYMMKHLVWASRE Q80363 22 1 -
RPGGRKRYMLKHLVWASRE Q77805 22 1 -
RPGGKKHYMLKHLVWASRE O90056 22 1 -
RPGGKKHYMLKHLVWANRE Q75001 22 1 -
KPGGKKHYMMKHLVWASRE O12157 22 1 -
KPGGKKHYMMKHLVWASRE Q80626 22 1 -
RPGGKKKYRMKHLVWASRE O91079 22 1 -
RPGGKKKYRMKHLVWASRE O91080 22 1 -
RPGGKKKYMLKHIVWAANE Q87955 22 1 -
RPGGKKKYMLKHIVWAANE Q87964 22 1 -
RPGGKKRYKLKHIVWAANE Q88134 22 1 -
RPGGKKRYKLKHIVWAANE Q89464 22 1 -
RPGGKKRYQLKHIVWAANE GAG_SIVSP 22 1 -
RPGGKKKYMLKHVVWAANE GAG_SIVM1 22 1 -
RPGGKKKYMLKHVVWAANE Q88092 22 1 -
RPGGKKKYMLKHVVWAANE Q88003 22 1 -
RPGGKKKYMLKHVVWAANE Q88001 22 1 -
RPGGKKKYMLKHVVWAANE Q88000 22 1 -
RPGGKKKYMLKHVVWAANE Q07386 22 1 -
RPGGKKKYMLKHVVWAANE Q03859 22 1 -
RPGGKKKYMLKHVVWAANE O41911 22 1 -
RPGGKKKYRLKHIVWAANE P88141 22 1 -
RPGGKKKYMLKHVVWAANE O57058 22 1 -
RPGGKKKYRLKHIVWAANE GAG_HV2ST 22 1 -
RPGGRKRYMMKHLVWASRE GAG_SIVCZ 22 1 -
RPGGKKKYKLKHIVWAANE GAG_HV2CA 22 1 -
RPGGKKKYRLKHIVWAANE Q76621 22 1 -
RPGGKKKYKLKHIVWAANE GAG_HV2NZ 22 1 -
RPNGKKKYMLKHVVWAANE Q87705 22 1 -
RPNGKKKYMLKHVVWAANE Q88015 22 1 -
RPNGKKKYMLKHVVWAANE O90316 22 1 -
RPGGKKKYMLKHVVWAANE GAG_SIVMK 22 1 -
RPGGKKKYMLKHVVWAANE GAG_SIVMS 22 1 -
RPGGKKKYMLKHVVWAANE Q88142 22 1 -
RPSGKKKYRLKHIVWAANE GAG_HV2G1 22 1 -
RPGGKKKYRLKHIVWAANE GAG_HV2SB 22 1 -
RPGGKKKYRLKHIVWAANE GAG_HV2BE 22 1 -
RPGGKKRYCLKHIIWAVNE Q76633 22 1 -
RPGGKKKYMLKHVVWAVNE GAG_HV2D2 22 1 -
RPNGKKRYRLKHVVWAANE GAG_HV2D1 22 1 -
RPGSKKAYRLKHLVWASRE Q79665 22 1 -
RPGGKKKYRLKHIVWAANE GAG_HV2KR 22 1 -
RPGGKKKYRLKHIVWAANK GAG_HV2RO 22 1 -
RPGGKKRYMLKHIVWAVNE Q74230 22 1 -
RPNGKKKYMLKHVVWAANE GAG_SIVS4 22 1 -
RPNGKKKYMLKHVVWAANE P89153 22 1 -
RPNGKKKYQLKHLIWAGKE Q87763 22 1 -
KPGSKKKYRLKHLVWASRE Q77372 22 1 -
RPNGKKKYQLKHLIWAGKK P89903 22 1 -
RPGGKKKYMIKHLVWARSE Q87621 22 1 -
RPNGKKKYKLRHLVWASKE Q87107 22 1 -
RPNGKKKYQIKHLIWAGKE GAG_SIVAT 22 1 -
RPNGKKKYQIKHLIWAGKE Q88098 22 1 -
RPNGKKKYQIKHLIWAGKE GAG_SIVAI 22 1 -
RPNGKKKYQIKHLIWAGKK GAG_SIVA1 22 1 -
RPTGKKKYQIKHLIWAGKE GAG_SIVAG 22 1 -
KRGGKKCYRLKHLCWCKGE GAG_SIVGB 22 1 -
RPKGKKRYLVRHLVWAKKE Q03259 23 1 -
RPGSKKTYQKRHVEWATKE O90272 22 1 -

Motif 3 width=16
Element Seqn Id St Int Rpt
ERFAVNPGLLETSEGC Q74806 42 1 -
ERFALNPSLLETTEGC P89692 42 1 -
ERFALNPSLLETTEGC P90248 42 1 -
ERFAVNPSLLETSEGC Q73367 42 1 -
ERFALNPGLLETGEGC GAG_HV1MA 41 1 -
ERFAVNPGLLETSEGC Q80366 42 1 -
ERFAVNPGLLETSEGC O90157 42 1 -
ERFAVNPGLLETSEGC O90158 42 1 -
ERFALNPGLLETSEGC Q80623 42 1 -
ERFAVNPGLLESSEGC Q75754 42 1 -
ERFAVNPSLLETSEGC GAG_HV1J3 41 1 -
ERFALNPGLLETAEGC Q79451 42 1 -
ERFALNPGLLETAEGC P90072 42 1 -
ERFALNPGLLETAEGC P90073 42 1 -
ERFAVNPGLLETSEGC GAG_HV1A2 41 1 -
ERFAVNPGLLETSEGC Q74834 42 1 -
ERFAVNPGLLETSEGC GAG_HV1B1 41 1 -
ERFAVNPGLLETSEGC GAG_HV1B5 41 1 -
ERFAVNPGLLETSEGC GAG_HV1BR 41 1 -
ERFAVNPGLLETSEGC GAG_HV1H2 41 1 -
ERFAVNPGLLETSEGC GAG_HV1PV 41 1 -
DRFALNPGLLETTEGC O41414 42 1 -
ERFAVNPGLLETSEGC O42039 42 1 -
ERFAVNPGLLETSEGC Q74084 42 1 -
ERFAVNPGLLETSEGC Q78240 42 1 -
ERFAVNPGLLETSEGC GAG_HV1LW 41 1 -
ERFAVNPGLLETSEGC Q79899 42 1 -
ERFALNPGLLETSDGC GAG_HV1Z2 41 1 -
ERFAVNPGLLETAEGC Q72986 42 1 -
ERFALNPGLLETAEGC Q74452 42 1 -
ERFAVNPGLLETSEGC Q77690 42 1 -
ERFAVNPGLLETSEGC P89971 42 1 -
ERFAVNPGLLETSEGC O40215 42 1 -
ERFALNPSLLETTEGC Q80632 42 1 -
DRFALNPSLLETAEGC Q79360 42 1 -
ERFAVNPGLLETSEGC O93020 42 1 -
ERFAVNPGLLETAAGC Q72604 42 1 -
ERFALNPSFLETAEGC Q80306 42 1 -
ERFAINPGLLETSEGC GAG_HV1OY 41 1 -
ERFAVNPGLLETSEGC Q72628 42 1 -
ERFAVNPGLLETSEGC Q72631 42 1 -
ERFALNPSLLETTEGC Q79351 42 1 -
ERFAVNPGLLETSEGC GAG_HV1N5 41 1 -
ERFAVNPGLLETSEGC Q72497 42 1 -
ERFALNPSLLETTEGC Q80625 42 1 -
ERFAVNPGLLETSEGC O92878 42 1 -
ERFAVNPGLLETSEGC O92879 42 1 -
ERFALNPGLLETAEGC Q79450 42 1 -
ERFTVNLGLLETSEGC Q71812 42 1 -
ERFAVNPGLLETSEGC Q79791 42 1 -
ERFAVNPGLLETSEGC O92891 42 1 -
ERFAVNPGLLETSEGC O92892 42 1 -
ERFAVNPGLLETAEGC O71970 42 1 -
ERFALNPDLLETTEGC O41791 42 1 -
ERFALNPDLLETTEGC O41792 42 1 -
ERFAVNPGLLETSEGC O93085 42 1 -
ERFAVNPGLLETAEGC Q77603 42 1 -
ERFALNPGLLETAEGC O89926 42 1 -
ERFAVNPGLLETAEGC Q72489 42 1 -
ERFALNPGLLETAEGC O89962 42 1 -
ERFAVNPGLLESSEGC GAG_HV1JR 41 1 -
EKFALNPSLLETTEGC Q79350 42 1 -
ERFALNPSLLETTEGC Q79354 42 1 -
ERFAVNPGLLETSEGC O71965 42 1 -
ERFALNPGLLETPEGC O93182 42 1 -
ERFALNPGLLETPEGC O93215 42 1 -
ERFALNPGLLETAEGC P88150 42 1 -
ERFALNPGLLETAEGC P90071 42 1 -
ERFALNPGLLETTEGC P90239 42 1 -
DRFALNPGLLETAEGC Q80629 42 1 -
ERFALNPSLLETTEGC Q79361 42 1 -
ERFAVNPGLLETSEGC Q77604 42 1 -
ERFALNPSFLETAEGC Q97058 42 1 -
ERFALNPGLLETAEGC O89958 42 1 -
ERFALNPGLLETTEGC Q79362 42 1 -
ERFALNPSLLETTEGC Q77699 42 1 -
ERFALNPSLLETAGGC Q77697 42 1 -
DRFALNPSLLETKEGC Q80627 42 1 -
ERFALNPSLLETSEGC Q77698 42 1 -
ERFALNPGLLETAEGR Q80307 42 1 -
ERYALNPGLLETSEGC GAG_HV1EL 41 1 -
ERFALNPGLLETSEGC Q80364 42 1 -
ERFAVNPGLLETSEGC O92897 42 1 -
ERFAVNPGLLETSEGC O92898 42 1 -
ERFALDPGLLETSEGC O89290 42 1 -
ERFALDPGLLETSEGC O89291 42 1 -
ERFAVNPGLLETSEGC O90172 42 1 -
ERFALNPGLLETSEGC Q80181 42 1 -
ERFALNPGLLETADGC Q77701 42 1 -
ERFAVNPGLLETSDGC Q72616 42 1 -
ERFAVNPGLLETAAGC Q72596 42 1 -
ERFAINPGLLETSEGC GAG_HV1MN 41 1 -
ERFALNPGLLETTEGC Q79449 42 1 -
ERFALNPSLLETTEGC Q80628 42 1 -
ERFALNPGLLETAEGC Q77804 42 1 -
ERFAVDPGLLETSEGC GAG_HV1Y2 41 1 -
ERFAVNPGLLETSGGC Q79898 42 1 -
ERFALNPSLLETAEGC Q77700 42 1 -
ERFAVNPGLLETSKGC GAG_HV1C4 41 1 -
ERFALNPGLLETAEGC Q79448 42 1 -
ERFAINPGLLETSEGC Q80365 42 1 -
ERFALNPGLLETAEGC Q78565 42 1 -
ERFALNPGLLETSEGC O41782 42 1 -
ERFALNPGLLETSEGC O41783 42 1 -
ERFAVNPGLLETAAGC Q77602 42 1 -
ERFAVNPGLLETSEGC O90288 42 1 -
ERFALNPGLLETAEGC O89933 42 1 -
ERFAVNPGLLETSEGC O71271 42 1 -
ERFAVNPGLLETSEGC O92894 42 1 -
ERFAVNPGLLETAEGC Q72978 42 1 -
EKFALNPSLLETAEGC P90256 42 1 -
ERFAVNPSLLETAEGC GAG_HV1RH 41 1 -
ERFAVNPGLLETSEGC O71261 42 1 -
ERFAVNPGLLETSEGC O92888 42 1 -
ERFAVNPGLLETSEGC O92900 42 1 -
ERFAVNPGLLETSEGC O92901 42 1 -
ERFAVNPGLLETSEGC Q73329 42 1 -
ERFALNPGLLETSEGC O90090 42 1 -
ERFALNPDLLDTAEGC Q80631 42 1 -
ERFAINPGLLETAAGC O93112 42 1 -
ERFALNPGLLETSDGC P90258 42 1 -
ERFALDPSLLETSEGC Q78566 42 1 -
EKFTLNPGLLETAEGC GAG_HV1U4 41 1 -
ERFALNPGFLETAEGC Q79070 42 1 -
ERFSVNPGLLETSEGC O92883 42 1 -
ERFSVNPGLLETSEGC O92884 42 1 -
EKFALNPSLLETAEGC P90259 42 1 -
KRFALNPGLLETSEGC Q80624 42 1 -
EKFALNPSLLETAEGC P90257 42 1 -
ERFALNPGLLETSEGC Q80630 42 1 -
DRFALNPSLLETADGC O92651 42 1 -
DRFALNPSLLETADGC O92652 42 1 -
ERFTLNPGLLETSEGC GAG_HV1ND 41 1 -
ERFALDPGLLETSEGC Q80634 42 1 -
ERFALNPDLLETAEGC O89939 42 1 -
EKFALNPGLLETSEGC O90098 42 1 -
DRFAVNPGLLETAEGC O90064 42 1 -
EKFALNPGLLETTEGC Q80622 42 1 -
ERFALNPGLLETSEGC Q80193 42 1 -
ERFALNPGLLETADGC Q76580 42 1 -
ERFALNPGLLETSEGC O90072 42 1 -
ERFALNPGLLETSEGC P90255 42 1 -
DRFALNPGLLETSEGC O90081 42 1 -
ERFAINPGLLETPEGC Q79356 42 1 -
EKFALNPGLLKTAEGC Q89503 42 1 -
ERFAVNPGLLETSEGC O92294 42 1 -
ERFAIDPGLLETPEGC Q80621 42 1 -
GRFALNSGLLETSEGC Q80363 42 1 -
EKFALNPSLLETSEGC Q77805 42 1 -
DRFALNPGLLEAAEGC O90056 42 1 -
EKFALNPDLLDTSAGC Q75001 42 1 -
ERFALDPGLLETSEGC O12157 42 1 -
ERFALDPGLLETSQGC Q80626 42 1 -
ERFACNPGLMDTADGC O91079 42 1 -
ERFACNPGLMDTADGC O91080 42 1 -
DRFGLAESLLENKEGC Q87955 42 1 -
DRFGLAESLLENKEGC Q87964 42 1 -
DRFGLAESLLENKEGC Q88134 42 1 -
DRFGLAESLLENKEGC Q89464 42 1 -
DRFGLAESLLENKEGC GAG_SIVSP 42 1 -
DRFGLAESLLENKEGC GAG_SIVM1 42 1 -
DRFGLAESLLENKEGC Q88092 42 1 -
DRFGLAESLLENKEGC Q88003 42 1 -
DRFGLAESLLENKEGC Q88001 42 1 -
DRFGLAESLLENKEGC Q88000 42 1 -
DRFGLAESLLENKEGC Q07386 42 1 -
DRFGLAESLLENKEGC Q03859 42 1 -
DRFGLAESLLENKEGC O41911 42 1 -
DRFRLAENLLESKEGC P88141 42 1 -
DRFGLADSLLENKEGC O57058 42 1 -
DRFGLAESLLESKEGC GAG_HV2ST 42 1 -
ERFACDPGLMESKEGC GAG_SIVCZ 42 1 -
DRFGLAESLLESKEGC GAG_HV2CA 42 1 -
DRFGLAESLLESKEGC Q76621 42 1 -
DRFGLAESLLESKEGC GAG_HV2NZ 42 1 -
DRFGLAESLLENKEGC Q87705 42 1 -
DRFGLAESLLENKEGC Q88015 42 1 -
DRFGLAESLLETKEGC O90316 42 1 -
DRFGLAESLLENKEGC GAG_SIVMK 42 1 -
DRFGLAESLLESKEGC GAG_SIVMS 42 1 -
DRFGLAESLLESKEGC Q88142 42 1 -
DKFGLAESLLESKEGC GAG_HV2G1 42 1 -
DRFGLTESLLESKEGC GAG_HV2SB 42 1 -
DKFGLAESLLESKEGC GAG_HV2BE 42 1 -
DRFGLAESLLESKEGC Q76633 42 1 -
DRFGLAESLLESKEGC GAG_HV2D2 42 1 -
DRFGLAESLLESKEGC GAG_HV2D1 42 1 -
ERYACNPGLLETAEGT Q79665 42 1 -
GKFGLAESLLESKEGC GAG_HV2KR 42 1 -
DRFGLAESLLESKEGC GAG_HV2RO 42 1 -
ERFGLAESRLGSKEGC Q74230 42 1 -
DRFGLAESLLDNKEGC GAG_SIVS4 42 1 -
DRFGLAESLLDNKEGC P89153 42 1 -
ERFGLHEKLLETEEGC Q87763 42 1 -
ERFACNPELLETAEGN Q77372 42 1 -
ERFGLHEKLLETKEGC P89903 42 1 -
QRFALSSSLLETSEGC Q87621 42 1 -
DRFSLSANLLETKEGV Q87107 42 1 -
ERFGLHERLLETEEGC GAG_SIVAT 42 1 -
ERFGLHDRLLETEDGC Q88098 42 1 -
ERFGLHEKLLETKEGC GAG_SIVAI 42 1 -
DRFGLHEKLLETEEGC GAG_SIVA1 42 1 -
ERFGLHERLLESEEGC GAG_SIVAG 42 1 -
DRFGLSDKLLETQQGC GAG_SIVGB 42 1 -
DRFGLSDQLMESKEGC Q03259 43 1 -
DRFGLGSQLLETAEGC O90272 42 1 -

Motif 4 width=20
Element Seqn Id St Int Rpt
TGSEELRSLFNTVATLYCVH Q74806 70 12 -
TGTEELRSLYNTVATLYCVH P89692 70 12 -
TGTEELRSLYNTVATLYCVH P90248 70 12 -
TGSEELKSLYNTVATLYCVH Q73367 70 12 -
TGSEEIKSLYNTVATLYCVH GAG_HV1MA 69 12 -
TGSEELRSLFNTVATLYCVH Q80366 70 12 -
TGSEELRSLYNTVATLYCVH O90157 70 12 -
TGSEELRSLYNTVATLYCVH O90158 70 12 -
TGTEELKSLFNTVATLYCVH Q80623 70 12 -
TGSEELRSLYNTVATLYCVH Q75754 70 12 -
TGSEELKSLFNTVATLYCVH GAG_HV1J3 69 12 -
TGSEELKSLFNTIATLWCVH Q79451 70 12 -
TGSEELKSLYNTIATLWCVH P90072 70 12 -
TGSEELKSLYNTIATLWCVH P90073 70 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1A2 69 12 -
TGSEELRSLYNTVATLYCVH Q74834 70 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1B1 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1B5 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1BR 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1H2 69 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1PV 69 12 -
TGTEEIKSLYNTVATLYCVH O41414 70 12 -
TGSEELRSLHNTVAVLYCVH O42039 70 12 -
TGSEERRSLYNTVATLYCVH Q74084 70 12 -
TGSEERRSLYNTVATLYCVH Q78240 70 12 -
TGSEECRSLYNTVATLYCVH GAG_HV1LW 69 12 -
TGTEELRSLYNTVATLYCVH Q79899 70 12 -
TGSEELRSLFNTVATLYCVH GAG_HV1Z2 69 12 -
TGSEELRSLFNTVAVLYCVH Q72986 70 12 -
TGSEELKSLFNTIATLWCVH Q74452 70 12 -
TGSEELRSLYNTVATLYCVH Q77690 70 12 -
TGSEELRSLYNTVAVLYCVH P89971 70 12 -
TGSEELKSLFNTVATLYCVH O40215 70 12 -
TGTEELKSLFNTVAVLYCVH Q80632 70 12 -
TGTEELRSLFNTVATLYCVH Q79360 70 12 -
TGSEELRSLYNTVATLYCVH O93020 70 12 -
TGSEELKSLFNTVAVLYCVH Q72604 70 12 -
TGSEELKSLFNTVATLWCVH Q80306 70 12 -
TGSEEIRSLYNTVATLYCVH GAG_HV1OY 69 12 -
TGSEELRSLYNTVATLYCVH Q72628 70 12 -
TGSEELRSLYNTVATLYCVH Q72631 70 12 -
TGTEEIRSLFNAVAVLYCVH Q79351 70 12 -
TGSEELRSLYNTIAVLYCVH GAG_HV1N5 69 12 -
TGSEELRSLYNTIAVLYCVH Q72497 70 12 -
TGTEELRSLFNTIAVLYCVH Q80625 70 12 -
TGSEEIKSLYNTVATLYCVH O92878 70 12 -
TGSEEIKSLYNTVATLYCVH O92879 70 12 -
TGTEELKSLHNTVAVLYCVH Q79450 70 12 -
TGSEELKSLYNTVAVLYCVH Q71812 70 12 -
TGSEERRSLFNTVAVLYCVH Q79791 70 12 -
TGSEELRSLYNTVATLYCVH O92891 70 12 -
TGSEELRSLYNTVATLYCVH O92892 70 12 -
TGSEELRSLYNTIATLYCVH O71970 70 12 -
TGTEEIKSLFNTVATLYCVH O41791 70 12 -
TGTEEIKSLFNTVATLYCVH O41792 70 12 -
TGSEELRSLFNTVATLYCVH O93085 70 12 -
TGSEELKSLFNAVAVLYCVH Q77603 70 12 -
TGTEEIKSLFNTVATLYCVH O89926 70 12 -
TGSEELRSLFNTVATLYCVH Q72489 70 12 -
TGSEELKSLYNTIATLWCVH O89962 70 12 -
TGSEELTSLYNTVATLYCVH GAG_HV1JR 69 12 -
TGTEELRSLFNTVATLYCVH Q79350 70 12 -
TGTEELRSLFNTVATLYCVH Q79354 70 12 -
TGSEELRSLYNTIATLYGVH O71965 70 12 -
TGTEELKSLFNLVAVLYCVH O93182 70 12 -
TGTEELKSLFNLVAVLYCVH O93215 70 12 -
TGSEELKSLFNTIATLWCVH P88150 70 12 -
TGSEELKSLFNTIATLWCVH P90071 70 12 -
TGTEEIISLYNTVATLYCVH P90239 70 12 -
TGTEEIKSLYNTVATLYCVH Q80629 70 12 -
TGTEELRSLFNTVATLWCVH Q79361 70 12 -
TGSEELRSLYNTVAVLYCAH Q77604 70 12 -
TGLEELKSLFNTVATLWCVH Q97058 70 12 -
TGSEELKSLYNTIATLWCVH O89958 70 12 -
TGTEELRSLYNTVATLYCVH Q79362 70 12 -
TGTEELRSLYNTVATLYCVH Q77699 70 12 -
TGSEELKSLFNTIATLWCVH Q77697 70 12 -
TGTEEIKSLYNTVAVLFCVH Q80627 70 12 -
TGSEELRSLYNTIATLWCVH Q77698 70 12 -
TGSEELKSLFNTVVTLWCVH Q80307 70 12 -
TGTEELRSLYNTVATLYCVH GAG_HV1EL 69 12 -
TGSEEVKSLFNTVATLYCVH Q80364 70 12 -
TGSEELKSLYNTVAVLYCVH O92897 70 12 -
TGSEELKSLYNTVAVLYCVH O92898 70 12 -
TGSEELKSLYNTIAVLYYVH O89290 70 12 -
TGSEELKSLYNTIAVLYYVH O89291 70 12 -
TGSEELRSLYNTIAALYCVH O90172 70 12 -
TGSEELRSLYNTIATLYCVH Q80181 70 12 -
TGSEELKSLFNAIAVLWCVH Q77701 70 12 -
TGSEELKSLYNTVATLYCVH Q72616 70 12 -
TGSEELKSLFNTVAVHYCVH Q72596 70 12 -
TGSEERKSLYNTVATLYCVH GAG_HV1MN 69 12 -
TGTEELKSLFNAVAVLWCIH Q79449 70 12 -
TGSEELKSLFNTVVTLYCVH Q80628 70 12 -
TESKELKSLYNTIAVLWCVH Q77804 70 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1Y2 69 12 -
TGSEELKSLHNTVATLYCVH Q79898 70 12 -
TGSEELRSLFNTVATLWCVH Q77700 70 12 -
TGSEELRSLYNTVATLYCVH GAG_HV1C4 69 12 -
TGSEELRSLFNTVVTLLCVH Q79448 70 12 -
TGSEEIKSLFNTVATLYCVH Q80365 70 12 -
SGSEDLKSLYNTVATLYCVH Q78565 70 12 -
TGSEEIKSLYNTVVTLYCVH O41782 70 12 -
TGSEEIKSLYNTVVTLYCVH O41783 70 12 -
TGSEELRSLYNTVATLYCVH Q77602 70 12 -
TGSEERKSLYNTVATLYCVH O90288 70 12 -
TGTEEIKSLFNTVATLYCVH O89933 70 12 -
TGSEDLRSVYNTVATLYCVH O71271 70 12 -
TGSEDLRSVYNTVATLYCVH O92894 70 12 -
TGSEELRSLFNTVAVLYCVH Q72978 70 12 -
TGTEEIRSLYNTVAVLYYVH P90256 70 12 -
TGSEELKSLYNAVATLYCVH GAG_HV1RH 69 12 -
TGSEELKSVYNAVAVLYCVH O71261 70 12 -
TGSEELKSVYNAVAVLYCVH O92888 70 12 -
TGSEELKSVYNAVAVLYCVH O92900 70 12 -
TGSEELKSVYNAVAVLYCVH O92901 70 12 -
TGSEELKSVYNAVAVLYCVH Q73329 70 12 -
TGTEELRSLFNTVATLYCVH O90090 70 12 -
TGTEELQSLFNLLATLYCVH Q80631 70 12 -
TGSEELKSLYNTVATLYCVH O93112 70 12 -
TGTEELRSLFNTVATLYCVH P90258 70 12 -
TGSEELKSLYNTVATLYCVH Q78566 70 12 -
TGTEELRSLYNTVAVLYCVH GAG_HV1U4 69 12 -
TGSEEVKSLFNTIATLYCIH Q79070 70 12 -
TGSEDFRSLYNTVATLYCVH O92883 70 12 -
TGSEDFRSLYNTVATLYCVH O92884 70 12 -
TGTEDIRSLYNTVAVLYYVH P90259 70 12 -
TGSKEIKSLFNTVATLYCVH Q80624 70 12 -
TGTEEIRSLYNTVAVLYYAH P90257 70 12 -
TGTEELQSLFNLLAVLYCVH Q80630 70 12 -
TGTEEIKSLFNTVATLYCVH O92651 70 12 -
TGTEEIKSLFNTVATLYCVH O92652 70 12 -
TGSEEIRSLYNTVATLYCVH GAG_HV1ND 69 12 -
TGSEELRSLYNTVAVLYFVH Q80634 70 12 -
TGTEEIKSLYNAVATLYCVH O89939 70 12 -
TGTEELRSLFNTVATLYCVH O90098 70 12 -
TGTEELRSLFNTVATLYCVH O90064 70 12 -
TGTEEIKSLYNTIATLYCVH Q80622 70 12 -
TGTEELRSLFNTVATLYCVH Q80193 70 12 -
TGTEELRSLYNTVATLYCVH Q76580 70 12 -
TGTEELRSLHNTVATLYCVH O90072 70 12 -
TGTEELRSLFNTAATLYCVH P90255 70 12 -
TGTEELRSLHNTVVTLYCVH O90081 70 12 -
TGSEEIKSLYNTVATLYCVH Q79356 70 12 -
TGSEELKSLFNTVATLYCVH Q89503 70 12 -
TGSEELRSLYNTVATLYCIH O92294 70 12 -
TGSEELRSLFNTIVVLYYVH Q80621 70 12 -
TGTDELRSLYNTVATLYCVH Q80363 70 12 -
TGTEELRSLYNTVATLYCVH Q77805 70 12 -
TGTEELRSLHNTVATLYCVH O90056 70 12 -
TGTEELKSLFNTVATLYCVH Q75001 70 12 -
TGTKELISLHNTVATLYCVH O12157 70 12 -
TGTKELISLHNTVATLYCVH Q80626 70 12 -
TGSEELRSLYNALAVLYCVH O91079 70 12 -
TGSEELRSLYNALAVLYCVH O91080 70 12 -
TGSENLKSLYNTVRVLWCIH Q87955 70 12 -
TGSENLKSLYNTVRVLWCIH Q87964 70 12 -
TGSENLKSLYNTVCVLWCIH Q88134 70 12 -
TGSENLKSLYNTVCVLWCIH Q89464 70 12 -
TGSENLKSLYNTVCVLWCIH GAG_SIVSP 70 12 -
TGSENLKSLYNTVCVIWCIH GAG_SIVM1 70 12 -
TGSENLKSLYNTVCVIWCIH Q88092 70 12 -
TGSENLKSLYNTVCVIWCIH Q88003 70 12 -
TGSENLKSLYNTVCVIWCIH Q88001 70 12 -
TGSENLKSLYNTVCVIWCIH Q88000 70 12 -
TGSENLKSLYNTVCVIWCIH Q07386 70 12 -
TGSENLKSLYNTVCVIWCIH Q03859 70 12 -
TGSENLKSLYNTVCVIWCIH O41911 70 12 -
TGSENLKSLFNTVCVIWCLH P88141 70 12 -
TGSENLKSLYNTVCVIWCIH O57058 70 12 -
TGSENLKSLFNTVCVIWCIH GAG_HV2ST 70 12 -
TGSEGLRSLFNTLAVLWCIH GAG_SIVCZ 70 12 -
TGSENLKSLFNTVCVIWCIH GAG_HV2CA 70 12 -
TGSENLKSLFNTVCVIFCIH Q76621 70 12 -
TGSENLKSLFNTVCVIWCIH GAG_HV2NZ 70 12 -
TGSENLKSLYNTVCVIWCIH Q87705 70 12 -
TGSENLKSLYNTVCVIWCIH Q88015 70 12 -
AGSENLKSLYNTVCVIWCIH O90316 70 12 -
TGSENLKSLYNTVCVIWCIH GAG_SIVMK 70 12 -
TGSENLKSLFNTVCVIWCIH GAG_SIVMS 70 12 -
TGSENLKSLFNTVCVIWCIH Q88142 70 12 -
TGSENLKSLFNTVCVIWCLH GAG_HV2G1 70 12 -
TGSENLKSLYNTTCVIWCLH GAG_HV2SB 70 12 -
TGSENLKSLFNTVCVIWCLH GAG_HV2BE 70 12 -
TGSENLKSLFNTVCVIYCLH Q76633 70 12 -
TGSENLKSLFNIVCVIFCLH GAG_HV2D2 70 12 -
TGSENLKSLFNTVCVIWCLH GAG_HV2D1 70 12 -
TGSEDLKSLWNAIAVLWCVH Q79665 70 12 -
TGSENLKSLFNTVCVIWCLH GAG_HV2KR 70 12 -
TGSENLKSLFNTVCVIWCIH GAG_HV2RO 70 12 -
TGSENLKSLYNTVCVIFCLH Q74230 70 12 -
TGSENLKSLYNTVCVIWCIH GAG_SIVS4 70 12 -
TGSENLKSLYNTVCVIWCIH P89153 70 12 -
TGSEGLKSLFNLTCVICCIH Q87763 70 12 -
TGSDSLQSLWNAIVVLWCVH Q77372 70 12 -
TGSEGLKSLFNLCCVIWCIH P89903 70 12 -
IRSPEIISLFNTICVLWCVH Q87621 70 12 -
TGSENLIALFNLCCVLACIH Q87107 70 12 -
TGSEGLKSLFNLVCVLYCLH GAG_SIVAT 70 12 -
TGSEGLKSLFNLVCVLYCIH Q88098 70 12 -
TGSEGLKALFNLCCVIWCIH GAG_SIVAI 70 12 -
TGSEGMKSLYNLVCVLLCVH GAG_SIVA1 70 12 -
TGSEGLKSLFNLVCVLFCVH GAG_SIVAG 70 12 -
QGSDNLKALVGTVCVVACIH GAG_SIVGB 70 12 -
NGSENLKSLFGIISVVWAVH Q03259 71 12 -
TGSKNLKALVGTVCVICCCH O90272 70 12 -

Motif 5 width=14
Element Seqn Id St Int Rpt
HQRIEVKDTKEALD Q74806 89 -1 -
HQRIEVKDTKEALD P89692 89 -1 -
HQRIEVKDTKEALD P90248 89 -1 -
HQRIEVKDTKEALD Q73367 89 -1 -
HQRIDVKDTKEALD GAG_HV1MA 88 -1 -
HQRIDVKDTKEALD Q80366 89 -1 -
HERIEVKDTKEALD O90157 89 -1 -
HERIEVKDTKEALD O90158 89 -1 -
HQRIEVKDTKEALD Q80623 89 -1 -
HQRIEVKDTKEALE Q75754 89 -1 -
HQRIEVKDTKEALE GAG_HV1J3 88 -1 -
HQRIDVKDTKEALD Q79451 89 -1 -
HQRIEVKDTKEALD P90072 89 -1 -
HQRIEVKDTKEALD P90073 89 -1 -
HQRIDVKDTKEALE GAG_HV1A2 88 -1 -
HQKIEVKDTKEALD Q74834 89 -1 -
HQRIEIKDTKEALD GAG_HV1B1 88 -1 -
HQRIEIKDTKEALD GAG_HV1B5 88 -1 -
HQRIEIKDTKEALD GAG_HV1BR 88 -1 -
HQRIEIKDTKEALD GAG_HV1H2 88 -1 -
HQRIEIKDTKEALD GAG_HV1PV 88 -1 -
HQRIEVKDTKEALD O41414 89 -1 -
HQRIEVKDTKEALE O42039 89 -1 -
HQRIEIKDTKEALD Q74084 89 -1 -
HQRIEIKDTKEALD Q78240 89 -1 -
HQRIEIKDTKEALD GAG_HV1LW 88 -1 -
HQNIEVKDTKEALE Q79899 89 -1 -
HERIEVKDTKEALE GAG_HV1Z2 88 -1 -
HQRIEVKDTKEALD Q72986 89 -1 -
HQRIDIKDTKEALD Q74452 89 -1 -
HQKIDVKDTKEALE Q77690 89 -1 -
HQKIEVKDTKEALD P89971 89 -1 -
HQNIDVRDTKEALD O40215 89 -1 -
HQRIEVKDTKDALD Q80632 89 -1 -
HQRIDVKDTKEALD Q79360 89 -1 -
HQKIDVKDTKEALD O93020 89 -1 -
HQRIDVKDTKEALD Q72604 89 -1 -
HQRIEVKDTKEALD Q80306 89 -1 -
HQKIEVKDTKEALD GAG_HV1OY 88 -1 -
HQRIEVKDTKEALE Q72628 89 -1 -
HQRIEVKDTKEALE Q72631 89 -1 -
HQRIEVKDTKEALD Q79351 89 -1 -
HQRIDVKDTKEALD GAG_HV1N5 88 -1 -
HQRIDVKDTKEALD Q72497 89 -1 -
HQRIEVKDTKEALD Q80625 89 -1 -
HQKIEVKDTKEALE O92878 89 -1 -
HQKIEVKDTKEALE O92879 89 -1 -
HQRIDVKDTKEALD Q79450 89 -1 -
HQGIEVKDTKEALD Q71812 89 -1 -
HQRIDVKDTKEALD Q79791 89 -1 -
HQRIEIKDTKEALE O92891 89 -1 -
HQRIEIKDTKEALE O92892 89 -1 -
HQKIEVKDTKEALE O71970 89 -1 -
HQRIEVKDTKEALE O41791 89 -1 -
HQRIEVKDTKEALE O41792 89 -1 -
HLRIEIKDTKEALE O93085 89 -1 -
HQQIEVKDTKEALD Q77603 89 -1 -
HQKIEVKDTTEALE O89926 89 -1 -
HQRIGVKDTKEALE Q72489 89 -1 -
HQRIDIKDTKEALD O89962 89 -1 -
HQRIEIKDTKEALE GAG_HV1JR 88 -1 -
HQRIDVKDTKEALD Q79350 89 -1 -
HQRIEVKDAKEALD Q79354 89 -1 -
HQKIEVKDTKEALD O71965 89 -1 -
HRKIDVKDTKEALD O93182 89 -1 -
HRKIDVKDTKEALD O93215 89 -1 -
HQRIDVKDTKEALD P88150 89 -1 -
HQRIDVKDTKEALD P90071 89 -1 -
HQNIEVKDTKEALD P90239 89 -1 -
HQRIDVKDTKEALD Q80629 89 -1 -
HQQINVKDTKEALD Q79361 89 -1 -
HQKIDVKDTKEALD Q77604 89 -1 -
HQRIEVKDTKEALD Q97058 89 -1 -
HKRIDIKDTKEALE O89958 89 -1 -
HQRIDVKDTKEALD Q79362 89 -1 -
HQRIDVKDTKEALD Q77699 89 -1 -
HQRIDIKDTKEALD Q77697 89 -1 -
HQRIDVKDTKEALD Q80627 89 -1 -
HRRIEIKDTKEALD Q77698 89 -1 -
HQRIEVKDTKEALD Q80307 89 -1 -
HKGIDVKDTKEALE GAG_HV1EL 88 -1 -
HERIKVADTKEALD Q80364 89 -1 -
HQRLEVKDTKEALE O92897 89 -1 -
HQRLEVKDTKEALE O92898 89 -1 -
HQKVEVKDTKEALE O89290 89 -1 -
HQKVEVKDTKEALE O89291 89 -1 -
HQRIDVKDTKEALD O90172 89 -1 -
HEKIEVKDTKEAVE Q80181 89 -1 -
HQRIDIKDTKEALD Q77701 89 -1 -
HQKIDVKDTKEALE Q72616 89 -1 -
HQRIDVKDTKEALD Q72596 89 -1 -
HQKIKIKDTKEALE GAG_HV1MN 88 -1 -
HQRIGVKDTKEALE Q79449 89 -1 -
HQRIEIRDTKEALD Q80628 89 -1 -
HQRIDIKDTKEALD Q77804 89 -1 -
HQKIEVKDTKEALE GAG_HV1Y2 88 -1 -
HQKIDVKDTKEALE Q79898 89 -1 -
HQRIDIKDTKEALD Q77700 89 -1 -
HQRIEVRDTKEALD GAG_HV1C4 88 -1 -
HQRIEVRDTKEAID Q79448 89 -1 -
HERIKVTDTKEALD Q80365 89 -1 -
HNRIEVKDTKEALE Q78565 89 -1 -
HERIKVASTKEALD O41782 89 -1 -
HERIKVASTKEALD O41783 89 -1 -
HQKIDVRDTKEALE Q77602 89 -1 -
HQKIKIKDTKEALE O90288 89 -1 -
HPKIEVKDTKEALE O89933 89 -1 -
HQRIEVKDTKEAVE O71271 89 -1 -
HQRIEVKDTKEAVE O92894 89 -1 -
HQRIEVKDTKEALD Q72978 89 -1 -
HQRIEVKDTKEALD P90256 89 -1 -
HQNIEVRDTKEALD GAG_HV1RH 88 -1 -
HQNIDIKDTKEALE O71261 89 -1 -
HQNIDIKDTKEALE O92888 89 -1 -
HQNIDIKDTKEALE O92900 89 -1 -
HQNIDIKDTKEALE O92901 89 -1 -
HQNIDIKDTKEALE Q73329 89 -1 -
HAEIEVRDTKEALD O90090 89 -1 -
HQRIDVKDTKEALE Q80631 89 -1 -
HQRIDITDTKEALD O93112 89 -1 -
HARIEVRDTKEALD P90258 89 -1 -
HARIEIKDTKEALD Q78566 89 -1 -
HQRIDVKDTKEALN GAG_HV1U4 88 -1 -
HQRIDIRDTKEALD Q79070 89 -1 -
HQRIEVKDTKEALE O92883 89 -1 -
HQRIEVKDTKEALE O92884 89 -1 -
HQRIEVKDTKEALD P90259 89 -1 -
HKRIEVKDTKEALE Q80624 89 -1 -
HQRIEVKDTKEALD P90257 89 -1 -
HQRIDIKDTKEALS Q80630 89 -1 -
HQRIDVKDTKEALD O92651 89 -1 -
HQRIDVKDTKEALD O92652 89 -1 -
HERIEVKDTKEAVE GAG_HV1ND 88 -1 -
HQKVEVKDTKEALE Q80634 89 -1 -
HQRIEVKDTKEALE O89939 89 -1 -
HAEIEVRDTKEALD O90098 89 -1 -
HAGIEVRDTKEALD O90064 89 -1 -
HQRIEIKDTQEALQ Q80622 89 -1 -
HEKIEVRDTKEALD Q80193 89 -1 -
HAGIEVRDTKEALD Q76580 89 -1 -
HAGIEIRDTKEALD O90072 89 -1 -
HERIEVRDTKEALD P90255 89 -1 -
HAGIEVRDTKEALD O90081 89 -1 -
HAGIKVTNTKEALD Q79356 89 -1 -
HQKINVKDTKEALD Q89503 89 -1 -
HQKIEIKDTKDALE O92294 89 -1 -
HQRVEIKDTKEALE Q80621 89 -1 -
HKGIEVRDTKEALD Q80363 89 -1 -
HARIEIQDTKEALD Q77805 89 -1 -
HEGIEVRDTKEALD O90056 89 -1 -
HQKIEIKDTKEALD Q75001 89 -1 -
HEKIDVRDTKEALD O12157 89 -1 -
HEKIEIRDTKEALD Q80626 89 -1 -
HSRIQIHNTQEALD O91079 89 -1 -
HSRIQIHNTQEALD O91080 89 -1 -
HAEEKVKHTEEAKQ Q87955 89 -1 -
HAEEKVKHTEEAKQ Q87964 89 -1 -
HAEEKVKHTEEAKQ Q88134 89 -1 -
HAEEKVKHTEEAKQ Q89464 89 -1 -
HAEEKVKHTEEAKQ GAG_SIVSP 89 -1 -
HAEEKVKHTEEAKQ GAG_SIVM1 89 -1 -
HAEEKVKHTEEAKQ Q88092 89 -1 -
HAEEKVKHTEEAKQ Q88003 89 -1 -
HAEEKVKHTEEAKQ Q88001 89 -1 -
HAEEKVKHTEEAKQ Q88000 89 -1 -
HAEEKVKHTEEAKQ Q07386 89 -1 -
HAEEKVKHTEEAKQ Q03859 89 -1 -
HAEEKVKHTEEAKQ O41911 89 -1 -
HAEEKVKDTEEAKK P88141 89 -1 -
HAEEKVKHTEEAKQ O57058 89 -1 -
HAEEKAKDTEEAKQ GAG_HV2ST 89 -1 -
HSDITVEDTQKALE GAG_SIVCZ 89 -1 -
HAEEKVKDTEEAKR GAG_HV2CA 89 -1 -
HAEEKVKDTEEAKK Q76621 89 -1 -
HAEEKVKDTEGAKQ GAG_HV2NZ 89 -1 -
HAEEKVKHTEEAKQ Q87705 89 -1 -
HAEEKVKHTEEAKQ Q88015 89 -1 -
HAEEKVKHTEEAKQ O90316 89 -1 -
HAEEKVKHTEEAKQ GAG_SIVMK 89 -1 -
HAEEKVKHTEEAKQ GAG_SIVMS 89 -1 -
HAEEKVKHTEEAKQ Q88142 89 -1 -
HAEEKVKDTEEAKK GAG_HV2G1 89 -1 -
HAEEKVKDTEEAKR GAG_HV2SB 89 -1 -
HAEEKVKDTEEAKK GAG_HV2BE 89 -1 -
HAEEKVKDTEEAKK Q76633 89 -1 -
HAEEKVKDTEEAKK GAG_HV2D2 89 -1 -
HAEEKVKDTEEAKK GAG_HV2D1 89 -1 -
HNRFDIRDTQQAIQ Q79665 89 -1 -
HAEEKVKDTEGAKQ GAG_HV2KR 89 -1 -
HAEEKVKDTEGAKQ GAG_HV2RO 89 -1 -
HAEEKVKDTEEAKK Q74230 89 -1 -
HAEEKVKHTEEAKQ GAG_SIVS4 89 -1 -
HAEEKVKHTEEAKQ P89153 89 -1 -
HQEAKVKDTEEAVI Q87763 89 -1 -
HNRYKIGDTQQAIQ Q77372 89 -1 -
HAEQKVKDTEEAVV P89903 89 -1 -
HKGEKIKDTEQAVK Q87621 89 -1 -
HAEIKVKDTEEAKA Q87107 89 -1 -
HKEQKVKDTEEAVA GAG_SIVAT 89 -1 -
HREQKVKDTEEAVA Q88098 89 -1 -
HAEQKVKDTEEAVV GAG_SIVAI 89 -1 -
HQEKKVKDTEEALA GAG_SIVA1 89 -1 -
HKDKEVKDTEEAVA GAG_SIVAG 89 -1 -
HAGIEIKSTQDALK GAG_SIVGB 89 -1 -
HAKKEVEDTEQAKQ Q03259 90 -1 -
HLGVRISDTQEAIS O90272 89 -1 -