| Identifier | TRNASYNTHTRP [View Relations] [View Alignment]
|
| Accession | PR01039 |
| No. of Motifs | 4 |
| Creation Date | 18-DEC-1998 (UPDATE 16-JUN-1999) |
| Title | Tryptophanyl-tRNA synthetase signature |
| Database References | PRINTS; PR90000 TRNASYNTH; PR90001 TRNASYNTHCLI
PROSITE; PS00178 AA_TRNA_LIGASE_I
BLOCKS; BL00178
PFAM; PF00579 tRNA-synt_1b
INTERPRO; IPR002306 |
| Literature References | 1. LODISH, H., BALTIMORE, D., BERK, A., ZIPURSKY, S.L., MATSUDAIRA, P.
AND DARNELL, J.
Nucleic Acids, the Genetic Code, and Protein Synthesis.
IN MOLECULAR CELL BIOLOGY, SCIENTIFIC AMERICAN BOOKS (NEW YORK), 1995,
PP.126-128
2. DELARUE, M.
Aminoacyl-tRNA synthetases.
CURR.OPIN.STRUCT.BIOL. 5 48-55 (1995).
3. PERONA, J.J., ROULD, M. AND STEITZ, T.A.
Structural Basis for Transfer RNA Aminoacylation by Escherichia coli
Glutaminyl-tRNA Synthetase.
BIOCHEMISTRY 32 8758-8771 (1993).
|
| Documentation | Appropriate attachment of an amino acid to its cognate tRNA is the key to
faithful translation of the genetic code. The family of enzymes responsible
for this is the aminoacyl-tRNA synthetases (AATRSs) (EC 6.1.1.-).
AATRSs catalyse a two-step reaction:
(1) Enzyme + amino acid + ATP ---> Enzyme(aminoacyl-AMP) + PPi
(2) tRNA + Enzyme(aminoacyl-AMP) ---> aminoacyl-tRNA + AMP + Enzyme
In the first step, they form an aminoacyl-adenylate, in which the carboxyl
of the amino acid is linked to the alpha-phosphate of ATP, by displacing
the pyrophosphate. When the correct tRNA is bound, the aminoacyl group is
transferred to the 2'- or 3'-terminal OH of the tRNA at the expense of AMP
[1].
Based on structural and sequence comparisons, this group of at least 20
proteins (in prokaryotes there are approximately 20, but in eukaryotes
there are usually 2 forms for each amino acid; namely, the cytosolic and
mitochondrial forms) can be divided into two classes.
Class I AATRSs contain a characteristic Rossman fold and are mostly
monomeric. At the primary structure level, two highly-conserved motifs
are observed, `HIGH' and `KMSKS' [2,3]; these are associated with the ATP-
binding site.
Class II AATRSs share an anti-parallel beta-sheet formation, flanked by
alpha-helices [3], and are mostly dimeric or multimeric.
Further distinction between the two classes is evident when the reaction
mechanisms are investigated. In reactions catalysed by the class I AATRSs,
the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in
class II reactions, the 3'-hydroxyl site is preferred.
Tryptophanyl-tRNA synthetase (EC 6.1.1.2 ) is specific to tryptophan and
belongs to class I.
TRNASYNTHTRP is a 4-element fingerprint that provides a signature for the
tryptophanyl-tRNA synthetase. The fingerprint was derived from an initial
alignment of 23 sequences: the motifs were drawn from conserved regions
within the N-terminal portion of the alignment - motifs 1 and 4 contain the
characteristic HIGH and KMSKS regions respectively. Two iterations on
OWL31.1 were required to reach convergence, at which point a true set
comprising 33 sequences was identified. Several partial matches were also
found, all of which are tyrosyl-tRNA synthetases.
An update on SPTR37_9f identified a true set of 29 sequences, and 4
partial matches all of which are tyrosyl-tRNA synthetases.
|
| Summary Information | 29 codes involving 4 elements
0 codes involving 3 elements
4 codes involving 2 elements
|
| Composite Feature Index | |
| True Positives | O42875 O53386 O59584 O67115
O82313 O84589 SYWC_YEAST SYWM_CAEEL
SYWM_YEAST SYW_ARCFU SYW_BACST SYW_BACSU
SYW_BORBU SYW_BOVIN SYW_CLOLO SYW_ECOLI
SYW_HAEIN SYW_HELPY SYW_HUMAN SYW_METJA
SYW_METTH SYW_MOUSE SYW_MYCGE SYW_MYCLE
SYW_MYCPN SYW_RABIT SYW_SCHPO SYW_SYNY3
SYW_TREPA |
| True Positive Partials | |
| Sequence Titles | O42875 PROBABLE TRYPTOPHANYL-TRNA SYNTHETASE, MITOCHONDRIAL (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST).
O53386 TRYPTOPHANYL TRNA SYNTHETASE - MYCOBACTERIUM TUBERCULOSIS.
O59584 301AA LONG HYPOTHETICAL TRYPTOPHANYL-TRNA SYNTHETASE - PYROCOCCUS HORIKOSHII.
O67115 TRYPTOPHANYL-TRNA SYNTHETASE - AQUIFEX AEOLICUS.
O82313 PUTATIVE TRYTOPHANYL-TRNA SYNTHETASE - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O84589 TRYPTOPHANYL TRNA SYNTHETASE - CHLAMYDIA TRACHOMATIS.
SYWC_YEAST TRYPTOPHANYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.2) (TRYPTOPHAN-- TRNA LIGASE) (TRPRS) - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
SYWM_CAEEL PROBABLE TRYPTOPHANYL-TRNA SYNTHETASE, MITOCHONDRIAL (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - CAENORHABDITIS ELEGANS.
SYWM_YEAST TRYPTOPHANYL-TRNA SYNTHETASE, MITOCHONDRIAL (EC 6.1.1.2) (TRYPTOPHAN-- TRNA LIGASE) (TRPRS) - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
SYW_ARCFU TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - ARCHAEOGLOBUS FULGIDUS.
SYW_BACST TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - BACILLUS STEAROTHERMOPHILUS.
SYW_BACSU TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - BACILLUS SUBTILIS.
SYW_BORBU TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
SYW_BOVIN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - BOS TAURUS (BOVINE).
SYW_CLOLO TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - CLOSTRIDIUM LONGISPORUM.
SYW_ECOLI TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - ESCHERICHIA COLI.
SYW_HAEIN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - HAEMOPHILUS INFLUENZAE.
SYW_HELPY TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
SYW_HUMAN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) (IFP53) - HOMO SAPIENS (HUMAN).
SYW_METJA TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - METHANOCOCCUS JANNASCHII.
SYW_METTH TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - METHANOBACTERIUM THERMOAUTOTROPHICUM.
SYW_MOUSE TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - MUS MUSCULUS (MOUSE).
SYW_MYCGE TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - MYCOPLASMA GENITALIUM.
SYW_MYCLE TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - MYCOBACTERIUM LEPRAE.
SYW_MYCPN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - MYCOPLASMA PNEUMONIAE.
SYW_RABIT TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - ORYCTOLAGUS CUNICULUS (RABBIT).
SYW_SCHPO PUTATIVE TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST).
SYW_SYNY3 TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
SYW_TREPA TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) - TREPONEMA PALLIDUM.
SYY_ARCFU TYROSYL-TRNA SYNTHETASE (EC 6.1.1.1) (TYROSINE--TRNA LIGASE) (TYRRS) - ARCHAEOGLOBUS FULGIDUS.
SYY_METTH TYROSYL-TRNA SYNTHETASE (EC 6.1.1.1) (TYROSINE--TRNA LIGASE) (TYRRS) - METHANOBACTERIUM THERMOAUTOTROPHICUM.
SYY_SULSO TYROSYL-TRNA SYNTHETASE (EC 6.1.1.1) (TYROSINE--TRNA LIGASE) (TYRRS) - SULFOLOBUS SOLFATARICUS.
SYY_SYNY3 TYROSYL-TRNA SYNTHETASE (EC 6.1.1.1) (TYROSINE--TRNA LIGASE) (TYRRS) - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
|
| Scan History | OWL31_1 2 100 NSINGLE
SPTR37_9f 3 100 NSINGLE
|
| Initial Motifs | Motif 1 width=17
Element Seqn Id St Int Rpt
ITIGNYIGALRQFVELQ SYW_BACST 14 14 -
LHLGNALGAITQWVALQ SYW_MYCLE 21 21 -
IHLGNYLGAIKHWVEMQ SYW_HELPY 29 29 -
FHLGNYLGATRVWTDLC SYWM_YEAST 47 47 -
LHIGHYVGSLKNRVQLQ SYW_CLOLO 16 16 -
MHVGHLIPFIFTKWLQD SYW_HUMAN 169 169 -
CNVGHLIPFIFTKWLQD RABERFX 173 173 -
MHVGHLIPFIFTKWLQD AB012222 3 3 -
MHIGHIIPFFATKWLQE G71206 1 1 -
LTIGNYMGALRQWVKMQ ECDAMOPRA6 16 16 -
LHLGHYVGSVVNRLKFQ E70100 18 18 -
PHFGHKMTMDEIVWHQS SYW_ARCFU 76 76 -
MHIGHKMIVDQLRWYDR SYW_METTH 74 74 -
MHLGHMIPFVFTKWLQE SYWC_YEAST 116 116 -
MHFGHKMVVDLLKFYQK SYW_METJA 79 79 -
PHLGNFFGSIEPWTELQ SYWM_CAEEL 33 33 -
MHVGHLIPFIFTKWLQD SYW_BOVIN 174 174 -
MHLGHMIPFMFCKWLQD SYW_SCHPO 96 96 -
QHLGNFLGVMQGLKQLQ SYW_MYCGE 15 15 -
MHVGHLIPFIFTKWLQD SYW_RABIT 173 173 -
VTLGNYIGAMKQFVELQ SYW_BACSU 15 15 -
LTIGNYMGALRQWVNMQ SYW_ECOLI 16 16 -
LHLGNYLGAIRSWVEQQ SYW_SYNY3 56 56 -
Motif 2 width=20
Element Seqn Id St Int Rpt
DIIACGFDINKTFIFSDLDY SYW_HUMAN 221 35 -
DYLACGINPDKVSIYLQSAI E70100 71 36 -
LYLACGIDPEKSTIFVQSHV ECDAMOPRA6 66 33 -
DIMPCGFDVNKTFIFSDLDY RABERFX 225 35 -
DIIACGFDINKTFIFSDLEY AB012222 55 35 -
DIIAVGFDPDKTFIFQNSEF G71206 54 36 -
LYLAVGLDPEKATLFIQSEV SYW_BACSU 65 33 -
LYLACGIDPEKSTIFVQSHV SYW_ECOLI 66 33 -
LYLACGIDLQYSTIFVQSHV SYW_SYNY3 106 33 -
KYLAVGIDPTQATLFIQSEV SYW_BACST 64 33 -
QYLALGIDPGRAVVFVQSHV SYW_MYCLE 75 37 -
LLLACGIDPKQSGLFIQSEV SYW_HELPY 79 33 -
SILAVGVDPEKASVIYQSAI SYWM_YEAST 102 38 -
DYLAVGIDPLKSTILVQSQI SYW_CLOLO 69 36 -
DIIACGFDVNKTFIFSDLDY SYW_RABIT 225 35 -
TLLALGLDYGKVNLFLQSDL SYW_MYCGE 65 33 -
DIIAVGFDPKKTFIFMNSTY SYW_SCHPO 149 36 -
KDITCGFDINKTFIFSDLDY SYW_BOVIN 225 34 -
SLIACGVDPNRTLLFRQSDV SYWM_CAEEL 88 38 -
NYIALGLDPEKINVYLQSKY SYW_METJA 131 35 -
DIIAVGFDPKNTFIFSDLQY SYWC_YEAST 169 36 -
GYIALGLDLEKDNIHVYLQS SYW_METTH 126 35 -
SIIALGLREDAVIYFQSKSS SYW_ARCFU 127 34 -
Motif 3 width=22
Element Seqn Id St Int Rpt
NLVPVGRDNESHIEFARELARR E70100 148 57 -
DLVPVGEDQKQHLELTRNLAER SYW_BACSU 140 55 -
NLVPVGEDQKQHLELSRDIAQR SYW_ECOLI 142 56 -
DKVPVGEDQKQHLELTRDIVIR SYW_SYNY3 182 56 -
DIVPVGEDQKQHIELTRDLAER SYW_BACST 139 55 -
DLVPVGEDQRQHLELARDLAQR SYW_MYCLE 152 57 -
DLVPVGEDQKQHLELTRNIAEK SYW_HELPY 155 56 -
THVPVGDDQSQHLELTRHLAEK SYWM_YEAST 191 69 -
TTVPVGEDQLPMIEQAREIVRS SYW_CLOLO 147 58 -
CLIPCAIDQDPYFRMTRDVAPR SYW_HUMAN 305 64 -
CLIPCAIDQDPYFRMTRDVAPR SYW_RABIT 309 64 -
DIVPVGNDQKQHLELTNDLAKR SYW_MYCGE 147 62 -
CLIPCAIDQDPYFRLTRDVSGR SYW_SCHPO 231 62 -
CLIPCAIDQDPYFRMTRDVAPR SYW_BOVIN 309 64 -
TTVPVGEDQSQHLNLLGGLAYA SYWM_CAEEL 165 57 -
VVVPVGIDQDPHIRLTRDIANR SYW_METJA 210 59 -
CLIPCAIDQDPYFRVCRDVADK SYWC_YEAST 251 62 -
VIVPVGPDQDPHIRLTRDIAAR SYW_METTH 205 59 -
VVVPVGADQDPHMRLTRDLAAR SYW_ARCFU 203 56 -
CLIPAAIDQDPYWRLQRDFAES G71206 124 50 -
CLIPCAIDQDPYFRMTRDVAPR AB012222 139 64 -
CLIPCAIDQDPYFRMTRDVAPR RABERFX 309 64 -
NLVPVGEDQKQHLELSRDIAQR ECDAMOPRA6 142 56 -
Motif 4 width=11
Element Seqn Id St Int Rpt
KMSASDPNSSI SYW_HUMAN 349 22 -
KMSASDPNSSI SYW_RABIT 353 22 -
KMSKSNPDQNG SYW_MYCGE 200 31 -
KMSASKDSSAI SYW_SCHPO 275 22 -
KMSASDPNSSI SYW_BOVIN 353 22 -
KMSKSSGGPRS SYWM_CAEEL 219 32 -
KMSSSKPETAI SYW_METJA 255 23 -
KMSASDDTTAI SYWC_YEAST 295 22 -
KMSSNRPKSAI SYW_METTH 251 24 -
KMSSSKPESYI SYW_ARCFU 308 83 -
KMSKSDDNRNN SYW_ECOLI 195 31 -
KMSKSDESELS SYW_SYNY3 239 35 -
KMSKSDPNPKA SYW_BACST 192 31 -
KMSKSASSDAG SYW_MYCLE 205 31 -
KMSKSDPNQKA SYW_BACSU 193 31 -
KMSASKPETAI G71206 168 22 -
KMSASDPNSSI AB012222 183 22 -
KMSASDPNSSI RABERFX 353 22 -
KMSKSDDNRNN ECDAMOPRA6 195 31 -
KMSKSLDNAIF E70100 200 30 -
KMSKSHQGANH SYW_HELPY 208 31 -
KMSKSDPNHDS SYWM_YEAST 244 31 -
KMSKSIGNAIY SYW_CLOLO 201 32 -
|
| Final Motifs | Motif 1 width=17
Element Seqn Id St Int Rpt
VTLGNYIGAMKQFVELQ SYW_BACSU 15 15 -
LTIGNYMGALRQWVNMQ SYW_ECOLI 16 16 -
LTIGNYLGALRNWVKMQ SYW_HAEIN 16 16 -
LHLGNYLGAIRSWVEQQ SYW_SYNY3 56 56 -
VHLGNYLGAIKNWVALQ O82313 15 15 -
LHLGNALGAVAQWVGLQ O53386 21 21 -
ITIGNYIGALRQFVELQ SYW_BACST 14 14 -
LHLGNALGAITQWVALQ SYW_MYCLE 21 21 -
LHLGHYFGVIRNWVKLQ O67115 13 13 -
QHLGNYLGVMQSLIELQ SYW_MYCPN 15 15 -
IHLGNYLGAIKHWVEMQ SYW_HELPY 29 29 -
PHIGNYLGSLKQWVQLQ O42875 26 26 -
FHLGNYLGATRVWTDLC SYWM_YEAST 47 47 -
LHLGHYAGSLGTRLRIQ SYW_TREPA 14 14 -
LHIGHYVGSLKNRVQLQ SYW_CLOLO 16 16 -
LHLGHWIGSIMNRLQLQ O84589 16 16 -
MHVGHLIPFIFTKWLQD SYW_HUMAN 169 169 -
MHVGHLIPFIFTKWLQD SYW_RABIT 173 173 -
MHLGHLVPFIFTKWLED SYW_MOUSE 173 173 -
QHLGNFLGVMQGLKQLQ SYW_MYCGE 15 15 -
LHLGHYVGSVVNRLKFQ SYW_BORBU 18 18 -
MHLGHMIPFMFCKWLQD SYW_SCHPO 96 96 -
MHVGHLIPFIFTKWLQD SYW_BOVIN 174 174 -
PHLGNFFGSIEPWTELQ SYWM_CAEEL 33 33 -
MHFGHKMVVDLLKFYQK SYW_METJA 79 79 -
MHIGHIIPFFATKWLQE O59584 1 1 -
MHLGHMIPFVFTKWLQE SYWC_YEAST 116 116 -
MHIGHKMIVDQLRWYDR SYW_METTH 74 74 -
PHFGHKMTMDEIVWHQS SYW_ARCFU 76 76 -
Motif 2 width=20
Element Seqn Id St Int Rpt
LYLAVGLDPEKATLFIQSEV SYW_BACSU 65 33 -
LYLACGIDPEKSTIFVQSHV SYW_ECOLI 66 33 -
LYLACGIDPNKSTIFVQSHV SYW_HAEIN 66 33 -
LYLACGIDLQYSTIFVQSHV SYW_SYNY3 106 33 -
LYLACGIDVSKASVFVQSHV O82313 65 33 -
QYLALGIDPGRATIFVQSQV O53386 71 33 -
KYLAVGIDPTQATLFIQSEV SYW_BACST 64 33 -
QYLALGIDPGRAVVFVQSHV SYW_MYCLE 75 37 -
DWLALGLDPQKSVLFIQSLV O67115 64 34 -
TLLAVGLDPQKACLFLQSDL SYW_MYCPN 65 33 -
LLLACGIDPKQSGLFIQSEV SYW_HELPY 79 33 -
ALLAIGINPQKSTLFFQSDV O42875 82 39 -
SILAVGVDPEKASVIYQSAI SYWM_YEAST 102 38 -
DYLACGIDAQRAVIYLQSAV SYW_TREPA 67 36 -
DYLAVGIDPLKSTILVQSQI SYW_CLOLO 69 36 -
DWLSVGIDPEKSAIYLQSAI O84589 71 38 -
DIIACGFDINKTFIFSDLDY SYW_HUMAN 221 35 -
DIIACGFDVNKTFIFSDLDY SYW_RABIT 225 35 -
DIIACGFDINKTFIFSDLEY SYW_MOUSE 225 35 -
TLLALGLDYGKVNLFLQSDL SYW_MYCGE 65 33 -
DYLACGINPDKVSIYLQSAI SYW_BORBU 71 36 -
DIIAVGFDPKKTFIFMNSTY SYW_SCHPO 149 36 -
KDITCGFDINKTFIFSDLDY SYW_BOVIN 225 34 -
SLIACGVDPNRTLLFRQSDV SYWM_CAEEL 88 38 -
NYIALGLDPEKINVYLQSKY SYW_METJA 131 35 -
DIIAVGFDPDKTFIFQNSEF O59584 54 36 -
DIIAVGFDPKNTFIFSDLQY SYWC_YEAST 169 36 -
GYIALGLDLEKDNIHVYLQS SYW_METTH 126 35 -
SIIALGLREDAVIYFQSKSS SYW_ARCFU 127 34 -
Motif 3 width=22
Element Seqn Id St Int Rpt
DLVPVGEDQKQHLELTRNLAER SYW_BACSU 140 55 -
NLVPVGEDQKQHLELSRDIAQR SYW_ECOLI 142 56 -
KSVPVGDDQKQHLEITRDIANR SYW_HAEIN 142 56 -
DKVPVGEDQKQHLELTRDIVIR SYW_SYNY3 182 56 -
DFVPVGEDQKQHIELAREIAQR O82313 142 57 -
ELVPVGEDQRQHLELARDVAQR O53386 148 57 -
DIVPVGEDQKQHIELTRDLAER SYW_BACST 139 55 -
DLVPVGEDQRQHLELARDLAQR SYW_MYCLE 152 57 -
EGVPVGEDQLPHIELSREIARR O67115 211 127 -
DIVPVGNDQKQHLELTRDLAQR SYW_MYCPN 147 62 -
DLVPVGEDQKQHLELTRNIAEK SYW_HELPY 155 56 -
THIPVGKDQSQHVELTRSIARS O42875 172 70 -
THVPVGDDQSQHLELTRHLAEK SYWM_YEAST 191 69 -
HLVPVGKDNESHVELTREVAKR SYW_TREPA 144 57 -
TTVPVGEDQLPMIEQAREIVRS SYW_CLOLO 147 58 -
HLVPVGKDNEAHVELTRDIAKT O84589 150 59 -
CLIPCAIDQDPYFRMTRDVAPR SYW_HUMAN 305 64 -
CLIPCAIDQDPYFRMTRDVAPR SYW_RABIT 309 64 -
CLIPCAIDQDPYFRMTRDVAPR SYW_MOUSE 309 64 -
DIVPVGNDQKQHLELTNDLAKR SYW_MYCGE 147 62 -
NLVPVGRDNESHIEFARELARR SYW_BORBU 148 57 -
CLIPCAIDQDPYFRLTRDVSGR SYW_SCHPO 231 62 -
CLIPCAIDQDPYFRMTRDVAPR SYW_BOVIN 309 64 -
TTVPVGEDQSQHLNLLGGLAYA SYWM_CAEEL 165 57 -
VVVPVGIDQDPHIRLTRDIANR SYW_METJA 210 59 -
CLIPAAIDQDPYWRLQRDFAES O59584 124 50 -
CLIPCAIDQDPYFRVCRDVADK SYWC_YEAST 251 62 -
VIVPVGPDQDPHIRLTRDIAAR SYW_METTH 205 59 -
VVVPVGADQDPHMRLTRDLAAR SYW_ARCFU 203 56 -
Motif 4 width=11
Element Seqn Id St Int Rpt
KMSKSDPNQKA SYW_BACSU 193 31 -
KMSKSDDNRNN SYW_ECOLI 195 31 -
KMSKSDDNRNN SYW_HAEIN 195 31 -
KMSKSDESELS SYW_SYNY3 239 35 -
KMSKSAPSDQS O82313 208 44 -
KMSKSAGTDAG O53386 201 31 -
KMSKSDPNPKA SYW_BACST 192 31 -
KMSKSASSDAG SYW_MYCLE 205 31 -
KMSKSYGNAVF O67115 261 28 -
KMSKSSKNQNG SYW_MYCPN 200 31 -
KMSKSHQGANH SYW_HELPY 208 31 -
KMSKSDINSKN O42875 225 31 -
KMSKSDPNHDS SYWM_YEAST 244 31 -
KMSKSLGNAIF SYW_TREPA 195 29 -
KMSKSIGNAIY SYW_CLOLO 201 32 -
KMSKSANNAIY O84589 201 29 -
KMSASDPNSSI SYW_HUMAN 349 22 -
KMSASDPNSSI SYW_RABIT 353 22 -
KMSASDPNSSI SYW_MOUSE 353 22 -
KMSKSNPDQNG SYW_MYCGE 200 31 -
KMSKSLDNAIF SYW_BORBU 200 30 -
KMSASKDSSAI SYW_SCHPO 275 22 -
KMSASDPNSSI SYW_BOVIN 353 22 -
KMSKSSGGPRS SYWM_CAEEL 219 32 -
KMSSSKPETAI SYW_METJA 255 23 -
KMSASKPETAI O59584 168 22 -
KMSASDDTTAI SYWC_YEAST 295 22 -
KMSSNRPKSAI SYW_METTH 251 24 -
KMSSSKPESYI SYW_ARCFU 308 83 -
|