WORKLIST ENTRIES (1):

BETAAMYLASE View alignment      Beta-amylase (glycosyl hydrolase family 14) signature
 Type of fingerprint: COMPOUND with 9  elements
Links:
   PRINTS; PR00131 GLHYDRLASE1; PR00132 GLHYDRLASE2; PR00133 GLHYDRLASE3
   PRINTS; PR00732 GLHYDRLASE4; PR00733 GLHYDRLASE6; PR00734 GLHYDRLASE7
   PRINTS; PR00735 GLHYDRLASE8; PR00134 GLHYDRLASE10; PR00911 GLHYDRLASE11
   PRINTS; PR00736 GLHYDRLASE15; PR00737 GLHYDRLASE16; PR00738 GLHYDRLASE20
   PRINTS; PR00739 GLHYDRLASE26; PR00740 GLHYDRLASE27; PR00741 GLHYDRLASE29
   PRINTS; PR00843 GLHYDRLASE30; PR00742 GLHYDRLASE35; PR00743 GLHYDRLASE36
   PRINTS; PR00744 GLHYDRLASE37; PR00745 GLHYDRLASE39; PR00746 GLHYDRLASE41
   PRINTS; PR00747 GLHYDRLASE47; PR00844 GLHYDRLASE48; PR00845 GLHYDRLASE52
   PRINTS; PR00846 GLHYDRLASE56; PR00849 GLHYDRLASE58; PR00850 GLHYDRLASE59
   PRINTS; PR00748 MELIBIASE; PR00137 LYSOZYME; PR00684 T4LYSOZYME
   PRINTS; PR00749 LYSOZYMEG; PR00110 ALPHAAMYLASE
   PRINTS; PR00841 GLHYDLASE14A; PR00842 GLHYDLASE14B; PR00847 HYALURONDASE
   PRINTS; PR00848 SPERMPH20
   INTERPRO; IPR001554
   PROSITE; PS00506 BETA_AMYLASE_1; PS00679 BETA_AMYLASE_2
   PFAM; PF01373 Glycosyl_hydr22
   PDB; 1BTC 3Dinfo
   SCOP; 1BTC
   CATH; 1BTC

 Creation date 04-JUN-1997; UPDATE 06-JUN-1999

   1. HENRISSAT, B. AND BAIROCH, A.
   New families in the classification of glycosyl hydrolases based on amino
   acid sequence similarities.
   BIOCHEM.J. 293 781-788 (1993).

   2. HENRISSAT, B.
   A classification of glycosyl hydrolases based on amino acid sequence
   similarities.
   BIOCHEM.J. 280 309-316 (1991).

   3. DAVIES, G. AND HENRISSAT, B.
   Structures and mechanisms of glycosyl hydrolases.
   STRUCTURE 3 853-859 (1995).

   4. HENRISSAT, B. AND BAIROCH, A.
   Updating the sequence-based classification of glycosyl hydrolases.
   BIOCHEM.J. 316 695-696 (1996).

   5. NITTA, Y., ISODA, Y., TODA, H. AND SAKIYAMA, F.
   Identification of glutamic acid-186 affinity-labeled by 2,3-epoxypropyl
   alpha-D-glucopyranoside in soybean beta-amylase.
   J.BIOCHEM. 105(4) 573-576 (1989).

   6. MIKAMI, B., SATO, M., SHIBATA, T., HIROSE, M., AIBARA, S., KATSUBE, Y.
   AND MORITA, Y.
   Three-dimensional structure of soybean beta-amylase determined at 3.0 A 
   resolution: preliminary chain tracing of the complex with alpha-cyclodextrin. 
   J.BIOCHEM. 112 541-546 (1992). 

   O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that
   hydrolyse the glycosidic bond between two or more carbohydrates, or between
   a carbohydrate and a non-carbohydrate moiety. A classification system for
   glycosyl hydrolases, based on sequence similarity, has led to the definition
   of up to 60 different families [1-4] (http://expasy.hcuge.ch/cgi-bin/lists?
   glycosid.txt).
   
   Family 14 encompasses the beta-amylases [5]. These are bacterial or plant
   enzymes that hydrolyse 1,4-alpha-glucosidic linkages in starch-type 
   polysaccharides, removing successive maltose units from the non-reducing
   ends of the chains. 
  
   The 3D structure of a complex of soybean beta-amylase with an inhibitor 
   (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray
   diffraction [6]. The enzyme folds into large and small domains: the large
   domain has a (beta alpha)8 super-secondary structural core, while the smaller
   is formed from two long loops extending from the beta-3 and beta-4 strands
   of the (beta alpha)8 fold [6]. The interface of the two domains, together
   with shorter loops from the (beta alpha)8 core, form a deep cleft, in which 
   the inhibitor binds [6]. Two maltose molecules also bind in the cleft,
   one sharing a binding site with alpha-cyclodextrin, and the other sitting
   more deeply in the cleft [6].
  
   BETAAMYLASE is a 9-element fingerprint that provides a signature for 
   beta-amylases. The fingerprint was derived from an initial alignment of
   7 sequences: the motifs were drawn from conserved regions spanning
   virtually the full alignment length - motif 1 spans beta-strand 2 and the
   third alpha-helix; motif 2 encodes helix 4; motif 3 spans the C-terminus of
   strand 3, together with strands 4 and 5, and includes the region encoded by
   PROSITE patterns BETA_AMYLASE_1 (PS00506), which contains a catalytically-
   important aspartate [5]; motif 4 spans helices 10 and 11, and includes the
   the region encoded by PROSITE patterns BETA_AMYLASE_2 (PS00679), which
   contains a catalytically-important glutamate [2]; motif 5 spans helix 14 and
   the N-terminus of helix 15; motifs 6 and 7 include strand 9 and helix 16
   respectively; motif 8 spans helix 17 and strand 10; and motif 9 includes
   helix 20 and strand 11. Two iterations on OWL29.3 were required to reach
   convergence, at which point a true set comprising 21 sequences was
   identified. A single partial match was found, AMYB_SECCE, a beta-amylase
   fragment that matches the final 3 motifs.
  
   An update on SPTR37_9f identified a true set of 20 sequences.

  SUMMARY INFORMATION
     20 codes involving  9 elements
      0 codes involving  8 elements
      0 codes involving  7 elements
      0 codes involving  6 elements
      0 codes involving  5 elements
      0 codes involving  4 elements
      0 codes involving  3 elements
      0 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    9|  20   20   20   20   20   20   20   20   20  
    8|   0    0    0    0    0    0    0    0    0  
    7|   0    0    0    0    0    0    0    0    0  
    6|   0    0    0    0    0    0    0    0    0  
    5|   0    0    0    0    0    0    0    0    0  
    4|   0    0    0    0    0    0    0    0    0  
    3|   0    0    0    0    0    0    0    0    0  
    2|   0    0    0    0    0    0    0    0    0  
   --+----------------------------------------------
     |   1    2    3    4    5    6    7    8    9  

True positives..
 Q42989         AMYB_VIGUN     Q42990         AMYB_WHEAT     
 Q42795         AMYB_TRIRP     Q08335         AMYB_SOYBN     
 AMYB_MEDSA     AMYB_HORVU     AMYB_MAIZE     AMYB_ARATH     
 AMYB_IPOBA     O65258         O23553         AMYB_THETU     
 O80831         AMYB_BACCI     AMYB_PAEPO     AMYB_BACCE     


  PROTEIN TITLES
   Q42989           BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_VIGUN       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   Q42990           BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_WHEAT       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   Q42795           BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_TRIRP       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   Q08335           BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_SOYBN       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_MEDSA       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_HORVU       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_MAIZE       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_ARATH       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   AMYB_IPOBA       BETA-AMYLASE (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALTOHYDROLASE
   O65258           F6N23.1 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
   O23553           BETA-AMYLASE - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
   AMYB_THETU       BETA-AMYLASE, THERMOPHILIC PRECURSOR (EC 3.2.1.2) (1,4-ALPHA
   O80831           PUTATIVE BETA-AMYLASE - ARABIDOPSIS THALIANA (MOUSE-EAR CRES
   AMYB_BACCI       BETA-AMYLASE PRECURSOR (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALT
   AMYB_PAEPO       BETA/ALPHA-AMYLASE PRECURSOR [INCLUDES: BETA-AMYLASE (EC 3.2
   AMYB_BACCE       BETA-AMYLASE PRECURSOR (EC 3.2.1.2) (1,4-ALPHA-D-GLUCAN MALT

SCAN HISTORY OWL29_3 2 100 NSINGLE SPTR37_9f 2 21 NSINGLE INITIAL MOTIF SETS BETAAMYLASE1 Length of motif = 15 Motif number = 1 Beta amylase motif I - 1 PCODE ST INT GVDGVMVDVWWGLVE AMYB_HORVU 44 44 GVDGVMVDVWWGIIE AMYB_ARATH 49 49 GVDGVMVDVWWGIIE AMYB_SOYBN 46 46 GCDGVMVDVWWGIIE AMYB_IPOBA 47 47 GADGVMIDVWWGLVE AMYB_MAIZE 44 44 GVYAITTDVWWGYVE AMYB_BACCI 70 70 GVYAITTDVWWGYVE AMYB_BACPO 69 69 GVYGITTDIWWGYVE AMYB_THETU 66 66 GFYAITVDFWWGDME AMYB_BACCE 72 72 BETAAMYLASE2 Length of motif = 19 Motif number = 2 Beta amylase motif II - 1 PCODE ST INT YDWSAYKQLFELVQKAGLK AMYB_HORVU 65 6 YDWTAYKTLFQLIARLGLK AMYB_ARATH 70 6 YDWRAYRSLFQLVQECGLT AMYB_SOYBN 67 6 YDWSAYRELFQLVKKCGLK AMYB_IPOBA 68 6 YDWSAYRQVFKLVQEAGLK AMYB_MAIZE 65 6 FDWSYYKTYADTVKQAGLK AMYB_BACCI 91 6 FDWSYYKTYANAVKEAGLK AMYB_BACPO 90 6 FDWSYYKTYADTVRAAGLK AMYB_THETU 87 6 FDFSYAQRFAQSVKNAGMK AMYB_BACCE 93 6 BETAAMYLASE3 Length of motif = 22 Motif number = 3 Beta amylase motif III - 1 PCODE ST INT IMSFHQCGGNVGDAVNIPIPQW AMYB_HORVU 87 3 IMSFHQCGGNVGDIVTIPIPQW AMYB_ARATH 92 3 IMSFHQCGGNVGDIVNIPIPQW AMYB_SOYBN 89 3 IMSFHQCGGNVGDAVFIPIPQW AMYB_IPOBA 90 3 IMSCHQCGGNVGDVVNIPIPQW AMYB_MAIZE 87 3 IISTHRCGGNVGDDCNIPLPSW AMYB_BACCI 113 3 IISTHKCGGNVGDDCNIPLPSW AMYB_BACPO 112 3 IMSTHACGGNVGDTVNIPIPSW AMYB_THETU 109 3 IISTHQCGGNVGDDCNVPIPSW AMYB_BACCE 115 3 BETAAMYLASE4 Length of motif = 23 Motif number = 4 Beta amylase motif IV - 1 PCODE ST INT GPAGEMRYPSYPQSHGWSFPGIG AMYB_HORVU 180 71 GPAGELRYPSYPQSQGWVFPGIG AMYB_ARATH 185 71 GPAGELRYPSYPQSQGWEFPRIG AMYB_SOYBN 182 71 GAAGELRYPSYPETQGWVFPGIG AMYB_IPOBA 183 71 GPAGEMRYPSYPQSQGWVFPGVG AMYB_MAIZE 180 71 GPSGELRYPSYYPAAGWSYPARG AMYB_BACCI 195 60 GPSGELRYPSYYPAAGWSYPGRG AMYB_BACPO 194 60 GPSGELRYPSYNPSHGWTYPGRG AMYB_THETU 191 60 GPAGELRYPSYTTSDGTGYPSRG AMYB_BACCE 198 61 BETAAMYLASE5 Length of motif = 20 Motif number = 5 Beta amylase motif V - 1 PCODE ST INT YLSEKGRFFLAWYSNNLIKH AMYB_HORVU 252 49 YVSEKGKFFMTWYSNKLIFH AMYB_ARATH 257 49 YVTEKGKFFLTWYSNKLLNH AMYB_SOYBN 254 49 YKTDMGKFFLTWYSNKLIIH AMYB_IPOBA 256 50 YQTDKGKFFLTWYSNKLIKH AMYB_MAIZE 252 49 YNITYGKDFLSWYQSVLENH AMYB_BACCI 273 55 YNSAYGKDFLSWYQSVLEKH AMYB_BACPO 272 55 YKTTYGNDFLTWYQSVLTNE AMYB_THETU 268 54 YLSMYGKDYLEWYQGILENH AMYB_BACCE 275 54 BETAAMYLASE6 Length of motif = 17 Motif number = 6 Beta amylase motif VI - 1 PCODE ST INT VQLAIKISGIHWWYKVP AMYB_HORVU 288 16 VNLAAKVSGIHWLYNHH AMYB_ARATH 293 16 VKLAIKVSGIHWWYKVE AMYB_SOYBN 290 16 VNIAAKVSGIHWWYNHV AMYB_IPOBA 292 16 VQLAIKVSGIHWWYNVP AMYB_MAIZE 288 16 VRIGAKISGIHWQMNNP AMYB_BACCI 310 17 VRIGAKISGLHWQMNNP AMYB_BACPO 309 17 VPIGAKIAGVHWLYNSP AMYB_THETU 305 17 VPIGAKIAGVHWQYNNP AMYB_BACCE 312 17 BETAAMYLASE7 Length of motif = 12 Motif number = 7 Beta amylase motif VII - 1 PCODE ST INT SHAAELTAGYYN AMYB_HORVU 305 0 SHAAELTAGYYN AMYB_ARATH 310 0 NHAAELTAGYYN AMYB_SOYBN 307 0 SHAAELTAGFYN AMYB_IPOBA 309 0 NHAAELTAGYYN AMYB_MAIZE 305 0 PHSAEHAGGYYD AMYB_BACCI 329 2 PHGTEQAGGYYD AMYB_BACPO 328 2 PHAAEYCAGYYN AMYB_THETU 324 2 PHGAEKPAGYND AMYB_BACCE 331 2 BETAAMYLASE8 Length of motif = 24 Motif number = 8 Beta amylase motif VIII - 1 PCODE ST INT YRTIARMLKRHRASINFTCAEMRD AMYB_HORVU 323 6 YRPIARMLSKHYGILNFTCLEMKD AMYB_ARATH 328 6 YRPIARMLSRHHAILNFTCLEMRD AMYB_SOYBN 325 6 YRPIARMLARHHATLNFTCLEMRD AMYB_IPOBA 327 6 YRTIAHMLTRHRASMNFTCAEMRD AMYB_MAIZE 323 6 YNRLIQKFKDTDLDLTFTALEMYD AMYB_BACCI 341 0 YNRLIQKFKDADLDLTFTCLEMSD AMYB_BACPO 340 0 YSTLLDQFKASNLAMTFTCLEMDD AMYB_THETU 336 0 YSHLLDAFKSAKLDVTFTCLEMTD AMYB_BACCE 343 0 BETAAMYLASE9 Length of motif = 23 Motif number = 9 Beta amylase motif IX - 1 PCODE ST INT LVQQVLSAGWREGLNVACENALP AMYB_HORVU 360 13 LVQEVLSKAWKEGIEVAGENALE AMYB_ARATH 365 13 LVQQVLSGGWREDIRVAGENALP AMYB_SOYBN 362 13 LVQQVLSSGWKEYIDVAGENALP AMYB_IPOBA 364 13 LVQQVLSAGWREGLNLACENALN AMYB_MAIZE 360 13 LVDTVSSIANSKGVRLNGENALP AMYB_BACCI 377 12 LVDTVSSIANAKGVRLNGENALP AMYB_BACPO 376 12 LVHYVANLANNKGIVHNGENALA AMYB_THETU 374 14 LVQNIATLANEKGIVLNGENALS AMYB_BACCE 379 12 FINAL MOTIF SETS BETAAMYLASE1 Length of motif = 15 Motif number = 1 Beta amylase motif I - 2 PCODE ST INT GVDGVMVDVWWGLVE Q42989 44 44 GVDGVMVDVWWGIIE AMYB_VIGUN 47 47 GVDGIMVDVWWGLVE Q42990 44 44 GVDGVMIDVWWGLVE AMYB_WHEAT 44 44 GVDGVMVDVWWGIIE Q42795 47 47 GVDGVMVDVWWGIIE AMYB_TRIRP 47 47 GVDGVMIDVWWGLVE Q08335 44 44 GVDGVMVDVWWGIIE AMYB_SOYBN 46 46 GVDGVMIDVWWGIIE AMYB_MEDSA 47 47 GVDGVMVDVWWGLVE AMYB_HORVU 44 44 GADGVMIDVWWGLVE AMYB_MAIZE 44 44 GVDGVMVDVWWGIIE AMYB_ARATH 49 49 GCDGVMVDVWWGIIE AMYB_IPOBA 47 47 NVDGVMVDCWWGIVE O65258 114 114 GVEGVMVDAWWGLVE O23553 70 70 GVYGITTDIWWGYVE AMYB_THETU 66 66 HVDGVKVDCWWGIVE O80831 282 282 GVYAITTDVWWGYVE AMYB_BACCI 70 70 GVYAITTDVWWGYVE AMYB_PAEPO 69 69 GFYAITVDFWWGDME AMYB_BACCE 72 72 BETAAMYLASE2 Length of motif = 19 Motif number = 2 Beta amylase motif II - 2 PCODE ST INT YDWEAYKQLFRLVQEAGLK Q42989 65 6 YDWSAYKSLFQLVQECGLK AMYB_VIGUN 68 6 YDWEAYKQLFRLVQEAGLK Q42990 65 6 YDWSAYKQVFDLVHEAGLK AMYB_WHEAT 65 6 YDWRAYRSLFQLVQECGLT Q42795 68 6 YDWSAYKSLFQLVQECGLK AMYB_TRIRP 68 6 YDWSAYKQVFDLVHEAGLK Q08335 65 6 YDWRAYRSLFQLVQECGLT AMYB_SOYBN 67 6 YDWSAYKSLFQLVQKCGLK AMYB_MEDSA 68 6 YDWSAYKQLFELVQKAGLK AMYB_HORVU 65 6 YDWSAYRQVFKLVQEAGLK AMYB_MAIZE 65 6 YDWTAYKTLFQLIARLGLK AMYB_ARATH 70 6 YDWSAYRELFQLVKKCGLK AMYB_IPOBA 68 6 YNWSGYKKLFQMIRELGLK O65258 135 6 YNWEGYAELIQMVQKHGLK O23553 91 6 FDWSYYKTYADTVRAAGLK AMYB_THETU 87 6 YNWTGYRQLFQMVRDLNLK O80831 303 6 FDWSYYKTYADTVKQAGLK AMYB_BACCI 91 6 FDWSYYKTYANAVKEAGLK AMYB_PAEPO 90 6 FDFSYAQRFAQSVKNAGMK AMYB_BACCE 93 6 BETAAMYLASE3 Length of motif = 22 Motif number = 3 Beta amylase motif III - 2 PCODE ST INT IMSFHQCGGNVGDIVNIPIPQW Q42989 87 3 IMSFHQCGGNVGDVVNIPIPQW AMYB_VIGUN 90 3 IMSFHQCGGNVGDIVNIPIPQW Q42990 87 3 IMSFHQCGGNVGDVVNIPIPQW AMYB_WHEAT 87 3 IMSFHQCGGNVGDIVNIPIPQW Q42795 90 3 IMSFHQCGGNVGDVVTIPIPQW AMYB_TRIRP 90 3 IMSFHQCGGNVGDVVNIPIPQW Q08335 87 3 IMSFHQCGGNVGDIVNIPIPQW AMYB_SOYBN 89 3 IMSFHQCGGNVGDVVNIPLPKW AMYB_MEDSA 90 3 IMSFHQCGGNVGDAVNIPIPQW AMYB_HORVU 87 3 IMSCHQCGGNVGDVVNIPIPQW AMYB_MAIZE 87 3 IMSFHQCGGNVGDIVTIPIPQW AMYB_ARATH 92 3 IMSFHQCGGNVGDAVFIPIPQW AMYB_IPOBA 90 3 VMSFHECGGNVGDDVHIQIPEW O65258 157 3 VMSFHQCGGNVGDSCSIPLPPW O23553 113 3 IMSTHACGGNVGDTVNIPIPSW AMYB_THETU 109 3 LMSFHECGGNVGDDVCIPLPHW O80831 325 3 IISTHRCGGNVGDDCNIPLPSW AMYB_BACCI 113 3 IISTHKCGGNVGDDCNIPLPSW AMYB_PAEPO 112 3 IISTHQCGGNVGDDCNVPIPSW AMYB_BACCE 115 3 BETAAMYLASE4 Length of motif = 23 Motif number = 4 Beta amylase motif IV - 2 PCODE ST INT GPAGEMRYPSYPESQGWVFPGIG Q42989 180 71 GPAGELRYPSYPQNQGWVFPGIG AMYB_VIGUN 183 71 GPAGEMRYPSYPQSQGWVFPGIG Q42990 180 71 GPAGEMRYPSYPQSQGWVFPGIG AMYB_WHEAT 180 71 GPAGELRYPSYPQSQGWEFPGIG Q42795 183 71 GPAGELRYPSYPQNQGWVFPGIG AMYB_TRIRP 183 71 GPAGEMRYPSYPQSQGWVFPGIG Q08335 180 71 GPAGELRYPSYPQSQGWEFPRIG AMYB_SOYBN 182 71 GPAGELRYPSYPQNQGWQFPGIG AMYB_MEDSA 183 71 GPAGEMRYPSYPQSHGWSFPGIG AMYB_HORVU 180 71 GPAGEMRYPSYPQSQGWVFPGVG AMYB_MAIZE 180 71 GPAGELRYPSYPQSQGWVFPGIG AMYB_ARATH 185 71 GAAGELRYPSYPETQGWVFPGIG AMYB_IPOBA 183 71 GPCGELRYPSYPAQFGWKYPGIG O65258 250 71 GPCGELRYPSYPESNGTWRFPGI O23553 205 70 GPSGELRYPSYNPSHGWTYPGRG AMYB_THETU 191 60 GPCGELRYPSCPIKHGWRYPGVG O80831 418 71 GPSGELRYPSYYPAAGWSYPARG AMYB_BACCI 195 60 GPSGELRYPSYYPAAGWSYPGRG AMYB_PAEPO 194 60 GPAGELRYPSYTTSDGTGYPSRG AMYB_BACCE 198 61 BETAAMYLASE5 Length of motif = 20 Motif number = 5 Beta amylase motif V - 2 PCODE ST INT YVTEKGKFFLTWYSNKLIKH Q42989 252 49 YLTEKGKFFLTWYSNQLLNH AMYB_VIGUN 255 49 YVTEKGKFFLTWYSNKLIKH Q42990 252 49 YLTEKGKFFLSWYSNKLIKH AMYB_WHEAT 252 49 YVTEKGKFFLTWYSNKLLNH Q42795 255 49 YLTEKGKFFLTWYSNQLLNH AMYB_TRIRP 255 49 YLTEKGKFFLSWYSNKLIKH Q08335 252 49 YVTEKGKFFLTWYSNKLLNH AMYB_SOYBN 254 49 YLTEKGKFFLTWYSNQLLNH AMYB_MEDSA 255 49 YLSEKGRFFLAWYSNNLIKH AMYB_HORVU 252 49 YQTDKGKFFLTWYSNKLIKH AMYB_MAIZE 252 49 YVSEKGKFFMTWYSNKLIFH AMYB_ARATH 257 49 YKTDMGKFFLTWYSNKLIIH AMYB_IPOBA 256 50 YDSYYGRFFLNWYSRVLIDH O65258 323 50 WNSEYGKFFMEWYSGKLLEH O23553 280 52 YKTTYGNDFLTWYQSVLTNE AMYB_THETU 268 54 YDGLYGRFFLKWYSQVLIDH O80831 491 50 YNITYGKDFLSWYQSVLENH AMYB_BACCI 273 55 YNSAYGKDFLSWYQSVLEKH AMYB_PAEPO 272 55 YLSMYGKDYLEWYQGILENH AMYB_BACCE 275 54 BETAAMYLASE6 Length of motif = 17 Motif number = 6 Beta amylase motif VI - 2 PCODE ST INT VQLAIKISGIHWWYRVP Q42989 288 16 VNLAIKVSGIHWWYKAQ AMYB_VIGUN 291 16 VQLAIKISGIHWWYRVP Q42990 288 16 VQLAIKISGIHWWYRVP AMYB_WHEAT 288 16 VKLAIKVSGIHWWYKVE Q42795 291 16 VKLAIKVSGIHWWYKAQ AMYB_TRIRP 291 16 VQLAIKVSGIHWWYRVP Q08335 288 16 VKLAIKVSGIHWWYKVE AMYB_SOYBN 290 16 VKLAIKVSGIHWWYKAP AMYB_MEDSA 291 16 VQLAIKISGIHWWYKVP AMYB_HORVU 288 16 VQLAIKVSGIHWWYNVP AMYB_MAIZE 288 16 VNLAAKVSGIHWLYNHH AMYB_ARATH 293 16 VNIAAKVSGIHWWYNHV AMYB_IPOBA 292 16 TCIAAKLSGIHWWYKTA O65258 357 14 RKLSGKVAGIHWHYNTR O23553 301 1 VPIGAKIAGVHWLYNSP AMYB_THETU 305 17 SCIAAKLPDVHWWYRTA O80831 525 14 VRIGAKISGIHWQMNNP AMYB_BACCI 310 17 VRIGAKISGLHWQMNNP AMYB_PAEPO 309 17 VPIGAKIAGVHWQYNNP AMYB_BACCE 312 17 BETAAMYLASE7 Length of motif = 12 Motif number = 7 Beta amylase motif VII - 2 PCODE ST INT NHAAELTAGYYN Q42989 305 0 NHAAELTAGYYN AMYB_VIGUN 308 0 NHAAELTAGYYN Q42990 305 0 NHAAELTAGYYN AMYB_WHEAT 305 0 NHAAELTAGYYN Q42795 308 0 NHAAELTAGYYN AMYB_TRIRP 308 0 NHAAELTAGYYN Q08335 305 0 NHAAELTAGYYN AMYB_SOYBN 307 0 NHAAELTAGYYN AMYB_MEDSA 308 0 SHAAELTAGYYN AMYB_HORVU 305 0 NHAAELTAGYYN AMYB_MAIZE 305 0 SHAAELTAGYYN AMYB_ARATH 310 0 SHAAELTAGFYN AMYB_IPOBA 309 0 SHAAELTAGFYN O65258 374 0 SHAAELTAGYYN O23553 318 0 PHAAEYCAGYYN AMYB_THETU 324 2 SHAAELTAGFYN O80831 542 0 PHSAEHAGGYYD AMYB_BACCI 329 2 PHGTEQAGGYYD AMYB_PAEPO 328 2 PHGAEKPAGYND AMYB_BACCE 331 2 BETAAMYLASE8 Length of motif = 24 Motif number = 8 Beta amylase motif VIII - 2 PCODE ST INT YRTIARMLTRHRACVNFTCAEMRD Q42989 323 6 YRPIAKMVSRHHASLNFTCLEMRD AMYB_VIGUN 326 6 YRTIARMLTRHRACVNFTCAEMRD Q42990 323 6 YRTIARMLTRHHASMNFTCAEMRD AMYB_WHEAT 323 6 YRPIARMLSRHHAILNFTCLEMRD Q42795 326 6 YRPIAKMVSRHHGILNFTCLEMRD AMYB_TRIRP 326 6 YRTIARMLTRHHASMNFTCAEMRH Q08335 323 6 YRPIARMLSRHHAILNFTCLEMRD AMYB_SOYBN 325 6 YRPIAKIVSRHHAILNFTCLEMRD AMYB_MEDSA 326 6 YRTIARMLKRHRASINFTCAEMRD AMYB_HORVU 323 6 YRTIAHMLTRHRASMNFTCAEMRD AMYB_MAIZE 323 6 YRPIARMLSKHYGILNFTCLEMKD AMYB_ARATH 328 6 YRPIARMLARHHATLNFTCLEMRD AMYB_IPOBA 327 6 YGPIAAMFKKHDAALNFTCVELRT O65258 392 6 YLPIAKMFNKHGVVLNFTCMEMKD O23553 336 6 YSTLLDQFKASNLAMTFTCLEMDD AMYB_THETU 336 0 YSAIASTLKKHGATLSFVSGEVQV O80831 560 6 YNRLIQKFKDTDLDLTFTALEMYD AMYB_BACCI 341 0 YNRLIQKFKDADLDLTFTCLEMSD AMYB_PAEPO 340 0 YSHLLDAFKSAKLDVTFTCLEMTD AMYB_BACCE 343 0 BETAAMYLASE9 Length of motif = 23 Motif number = 9 Beta amylase motif IX - 2 PCODE ST INT LVQQVLSAGWREGLHVACENALG Q42989 360 13 LVQQVLSGGWRENIEVAGENALS AMYB_VIGUN 363 13 LVQQVLSAGWREGLHVACENALG Q42990 360 13 LVQQVLSAGWREGLHVACENALG AMYB_WHEAT 360 13 LVQQVLSGGWREDIRVAGENALP Q42795 363 13 LVQQVLSGGWRENIEVAGENALS AMYB_TRIRP 363 13 LVQQVLSAGWREGLHVACENALG Q08335 360 13 LVQQVLSGGWREDIRVAGENALP AMYB_SOYBN 362 13 LVQQVLSGGWRENIEVAGENALS AMYB_MEDSA 363 13 LVQQVLSAGWREGLNVACENALP AMYB_HORVU 360 13 LVQQVLSAGWREGLNLACENALN AMYB_MAIZE 360 13 LVQEVLSKAWKEGIEVAGENALE AMYB_ARATH 365 13 LVQQVLSSGWKEYIDVAGENALP AMYB_IPOBA 364 13 LVWQVLNAAWDASIPVASENALP O65258 432 16 LVKQVQNATRQAGTELAGENALE O23553 373 13 LVHYVANLANNKGIVHNGENALA AMYB_THETU 374 14 VAWQVLNAAWDSGTPVARENSLA O80831 600 16 LVDTVSSIANSKGVRLNGENALP AMYB_BACCI 377 12 LVDTVSSIANAKGVRLNGENALP AMYB_PAEPO 376 12 LVQNIATLANEKGIVLNGENALS AMYB_BACCE 379 12

User query: Display/Full Code "BETAAMYLASE"