WORKLIST ENTRIES (1):

ALPHAAMYLASE View alignment     Alpha-amylase signature
 Type of fingerprint: COMPOUND with 5  elements
Links:
   PRINTS; PR00731 GLHYDRLASE1; PR00132 GLHYDRLASE2; PR00133 GLHYDRLASE3
   PRINTS; PR00732 GLHYDRLASE4; PR00733 GLHYDRLASE6; PR00734 GLHYDRLASE7
   PRINTS; PR00735 GLHYDRLASE8; PR00134 GLHYDRLASE10; PR00736 GLHYDRLASE15
   PRINTS; PR00737 GLHYDRLASE16; PR00738 GLHYDRLASE20; PR00739 GLHYDRLASE26
   PRINTS; PR00740 GLHYDRLASE27; PR00741 GLHYDRLASE29; PR00742 GLHYDRLASE35
   PRINTS; PR00743 GLHYDRLASE36; PR00744 GLHYDRLASE37; PR00745 GLHYDRLASE39
   PRINTS; PR00746 GLHYDRLASE41; PR00747 GLHYDRLASE48; PR00748 MELIBIASE
   PRINTS; PR00137 LYSOZYME; PR00684 T4LYSOZYME; PR00749 LYSOZYMEG
   PRINTS; PR00750 BETAAMYLASE
   INTERPRO; IPR000461
   PFAM; PF00128 alpha-amylase
   PDB; 2TAA 3Dinfo
   SCOP; 2TAA
   CATH; 2TAA

 Creation date 11-JUL-1991; UPDATE 13-JUN-1999

   1. HENRISSAT, B. AND BAIROCH, A.
   New families in the classification of glycosyl hydrolases based on amino
   acid sequence similarities.
   BIOCHEM.J. 293 781-788 (1993).

   2. HENRISSAT, B.
   A classification of glycosyl hydrolases based on amino acid sequence
   similarities.
   BIOCHEM.J. 280 309-316 (1991).

   3. DAVIES, G. AND HENRISSAT, B.
   Structures and mechanisms of glycosyl hydrolases.
   STRUCTURE 3 853-859 (1995).

   4. HENRISSAT, B. AND BAIROCH, A.
   Updating the sequence-based classification of glycosyl hydrolases.
   BIOCHEM.J. 316 695-696 (1996).

   5. ROGERS, J.C.
   Conserved amino-acid sequence domains in alpha-amylases from plants,
   mammals and bacteria.
   BIOCHEM.BIOPHYS.RES.COMMUN. 128 480-476 (1985).

   6. LONG, C.M., VIROLLE, J-J., CHANG, S-Y., CHANG, S. AND BIBB, M.J.
   Alpha-amylase gene of Streptomyces limosus: Nucleotide sequence, expression
   motifs, and amino-acid sequence homology to mammalian and invertebrate
   alpha-amylases.
   J.BACTERIOL. 169 5745-5754 (1987).

   7. MATSUURA, Y., KUSUNOKI, M., HARADA, W. AND KAKUDO, M.
   Structure and possible catalytic residues of taka-amylase A.
   J.BIOCHEM.(TOKYO) 95 697-702 (1984).

   8. BOEL, E., BRADY, L., BRZOZOWSKI, A.M., DEREWENDA, Z., DODSON, G.G.,
   JENSEN, V.J., PETERSEN, S.B., SWIFT, H., THIM, L. AND WOLDIKE, H.F.
   Calcium binding in alpha-amylases: An X-ray diffraction study at 2.1
   Angstroms resolution of two enzymes from Aspergillus.
   BIOCHEMISTRY 29(26) 6244-6249 (1990).

   O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that
   hydrolyse the glycosidic bond between two or more carbohydrates, or between
   a carbohydrate and a non-carbohydrate moiety. A classification system for
   glycosyl hydrolases, based on sequence similarity, has led to the definition
   of up to 60 different families [1-4] (http://expasy.hcuge.ch/cgi-bin/lists?
   glycosid.txt). Family 57 encompases the alpha-amylases (EC 3.2.1.1).
   
   Alpha-amylases are 1,4-alpha-D-glucan glucanohydrolases, which degrade 
   both the branched and unbranched forms of starch by cleaving the internal
   alpha-1,4 bonds connecting the glucose monomers. The products of these
   reactions are maltose and maltotriose, which are further degraded to glucose
   by maltases. One atom of calcium is required to bind to each protein
   molecule to allow it to function, but excess calcium can inhibit activity 
   by binding to amino acids that are required for the catalytic activity 
   of the enzyme.
   
   ALPHAAMYLASE is a 5-element fingerprint that provides a signature for alpha-
   amylase family. The fingerprint was derived from an initial alignment of 6
   sequences (after J.C. Rogers [5]): the motifs were drawn from conserved
   regions spanning the first two-thirds of the alignment. Three iterations
   on OWL11.0 were required to reach convergence, at which point a true set
   comprising 44 sequences was identified. Of these, all but 3 were alpha-
   amylases: AMT4_PSEST and AMT4_PSESA are maltotetrahydrolases, which cleave 
   the alpha-1,4 bonds between adjacent glucose monomers of maltotetrose, and 
   thus perform similar roles to alpha-amylases; and AMT6_BACS7 is a glucan-1,
   4-alpha-maltohexaosidase, which cleaves amylaceous polysaccharides in such 
   a way as to yield maltohexaose, a molecule consisting of 6 glucose monomers
   joined by alpha-1,4 bonds. 
   
   Motifs 2, 3 and 5 are good discriminators for all alpha-amylases and 
   related proteins, such as maltases and cyclomaltodextrin glucanotrans-
   ferases, which also digest alpha-1,4 bonds between connected glucose 
   monomers in either starch (CDGTases) or smaller molecules such as maltose 
   (maltases). Motifs 1 and 4 appear to discriminate between the alpha-amylases
   and the subfamily of related proteins that make only partial matches.
   
   Computer modelling studies have shown that the 5 motifs surround the active
   site, suggesting that they may be required for the activity of the protein
   (M.E.Beck, unpublished data). This hypothesis has been strengthened by 2
   studies: the first shows that of the 18 residues thought to be required for
   enzymic activity, 11 are contained within the 5 motifs [7]; the second
   shows that excess calcium acts as an inhibitor by binding to some of the
   residues contained in the motifs believed to have catalytic functions [8].
  
   An update on SPTR37_9f identified a true set of 102 sequences, and 99
   partial matches.

  SUMMARY INFORMATION
    102 codes involving  5 elements
     28 codes involving  4 elements
     17 codes involving  3 elements
     54 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    5| 102  102  102  102  102  
    4|  20   28   27    9   28  
    3|   2   17   17    0   15  
    2|   1   32   51    0   24  
   --+--------------------------
     |   1    2    3    4    5  

True positives..
 Q23834         O18345         Q23932         Q27923         
 Q27887         Q27584         Q27583         Q27582         
 Q24676         Q24675         Q24644         AMYA_DROYA     
 AMYA_DROME     Q24737         AMYA_DROMA     Q24643         
 Q24642         Q24611         Q24610         AMYP_MOUSE     
 O77017         O77016         O77014         O76265         
 O76261         O76260         Q27863         Q27611         
 O77018         O18344         Q24609         Q24613         
 Q27609         Q27610         Q27612         Q27891         
 O77015         O77019         O77020         O76262         
 O76459         O77013         O77022         O77021         
 O77407         O76263         O18408         AMYP_PIG       
 AMYS_MOUSE     O76264         AMY_TENMO      O77012         
 O77011         O76284         Q98942         O18420         
 AMYC_HUMAN     AMYP_HUMAN     AMYS_HUMAN     O18552         
 Q26855         Q26854         Q26193         Q16924         
 AMY1_AEDAE     O02413         O02652         P91778         
 AMY_ALTHA      P91982         Q52413         Q17059         
 Q53633         AMY_STRVL      AMY_STRGR      AMY_STRLM      
 AMY_STRHY      O65947         Q59964         AMY_STRTL      
 P97179         O86876         Q52516         AMYA_AERHY     
 Q56791         Q03651         AMY2_HORVU     AMY1_AERHY     
 Q40015         AM3D_ORYSA     O81699         Q40016         
 AMY6_HORVU     AMY1_ORYSA     Q42504         AMY1_HORVU     
 O04965         Q40017         Q52414         AM2A_ORYSA     
 AMC2_ORYSA     O04964         
Subfamily:  Codes involving 4 elements
 Subfamily True positives..
 Q17023         AMY_THECU      O24781         Q41770         
 AMY_BACAM      O82953         O81700         AMY_BACSU      
 Q45516         Q45520         AMY_BACLI      O82839         
 P71034         O31193         AMY_BACST      AM3A_ORYSA     
 AM3E_ORYSA     Q41442         O50582         Q53786         
 AMT4_PSESA     AM3B_ORYSA     AMYA_VIGMU     AMY_BUTFI      
 Q40018         AMY3_WHEAT     O06915         Q48502         
Subfamily:  Codes involving 3 elements
 Subfamily True positives..
 Q61297         AMT6_BACS7     Q59222         AMT4_PSEST     
 Q03657         AM3C_ORYSA     O08452         O33476         
 Q60224         AMY2_SALTY     AMY2_ECOLI     AMY_ASPSH      
 AMYB_ASPAW     AMYA_ASPOR     AMYA_ASPAW     Q44062         
 AMYM_BACST     
Subfamily:  Codes involving 2 elements
 Subfamily True positives..
 O46116         O68875         P96107         AMY1_ECOLI     
 Q45574         Q03658         O50200         P70983         
 Q45772         P96992         CDGT_BACS0     CDGT_BACS3     
 Q60102         CDGT_BACLI     CDGT_BACCI     MAL1_DROME     
 CDG1_PAEMA     O52766         CDG2_PAEMA     CDGT_BACSS     
 AMYR_BACS8     CDGU_BACCI     AMY1_SACFI     Q60051         
 AMY_THETU      CDGT_BACSP     AMYB_PAEPO     Q06812         
 CDGT_BACST     AMY_BACCI      O53198         Q60027         
 AMY2_SCHPO     Q59239         O82984         O30565         
 CDGT_BACS2     CDGT_BACOH     YDD2_SCHPO     GLGX_ECOLI     
 Q01117         O13296         O16099         O16098         
 MA1S_YEAST     MA3S_YEAST     MA6S_YEAST     P94451         
 O48541         Q41386         P93416         O81638         
 O64454         AMY1_SCHPO     


  PROTEIN TITLES
   Q23834           ALPHA-AMYLASE - DROSOPHILA ANANASSAE (FRUIT FLY).
   O18345           ALPHA-AMYLASE - DROSOPHILA ANANASSAE (FRUIT FLY).
   Q23932           ALPHA-AMYLASE - DROSOPHILA ERECTA (FRUIT FLY).
   Q27923           ALPHA-AMYLASE - DROSOPHILA ERECTA (FRUIT FLY).
   Q27887           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   Q27584           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   Q27583           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   Q27582           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   Q24676           ALPHA-AMYLASE - DROSOPHILA TEISSIERI (FRUIT FLY).
   Q24675           ALPHA-AMYLASE - DROSOPHILA TEISSIERI (FRUIT FLY).
   Q24644           ALPHA-AMYLASE - DROSOPHILA SIMULANS (FRUIT FLY).
   AMYA_DROYA       ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   AMYA_DROME       ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   Q24737           ALPHA-AMYLASE - DROSOPHILA VIRILIS (FRUIT FLY).
   AMYA_DROMA       ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   Q24643           ALPHA-AMYLASE - DROSOPHILA SIMULANS (FRUIT FLY).
   Q24642           ALPHA-AMYLASE - DROSOPHILA SECHELLIA (FRUIT FLY).
   Q24611           ALPHA-AMYLASE - DROSOPHILA ORENA (FRUIT FLY).
   Q24610           ALPHA-AMYLASE - DROSOPHILA ORENA (FRUIT FLY).
   AMYP_MOUSE       ALPHA-AMYLASE, PANCREATIC PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-
   O77017           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA SIMULANS (FRUI
   O77016           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA SIMULANS (FRUI
   O77014           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA MAURITIANA (FR
   O76265           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ERECTA (FRUIT 
   O76261           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA SECHELLIA (FRU
   O76260           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA TEISSIERI (FRU
   Q27863           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   Q27611           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   O77018           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA TAKAHASHII.
   O18344           ALPHA-AMYLASE (AMY C6) - DROSOPHILA ANANASSAE (FRUIT FLY).
   Q24609           ALPHA AMYLASE - DROSOPHILA PSEUDOOBSCURA (FRUIT FLY).
   Q24613           ALPHA AMYLASE - DROSOPHILA PSEUDOOBSCURA (FRUIT FLY).
   Q27609           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   Q27610           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   Q27612           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   Q27891           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   O77015           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ORENA (FRUIT F
   O77019           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA BAKOUE.
   O77020           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA AURARIA (FRUIT
   O76262           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA LINI.
   O76459           PUTATIVE AMYLASE-RELATED PROTEIN AMYREL - DROSOPHILA SERRATA
   O77013           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA KIKKAWAI.
   O77022           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA PUNJABIENSIS.
   O77021           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA DOSSOUI.
   O77407           AMYLASE - DROSOPHILA ANANASSAE (FRUIT FLY).
   O76263           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA WILLISTONI (FR
   O18408           AMYLASE-RELATED PROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY
   AMYP_PIG         ALPHA-AMYLASE, PANCREATIC (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   AMYS_MOUSE       ALPHA-AMYLASE, SALIVARY AND HEPATIC PRECURSOR (EC 3.2.1.1) (
   O76264           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA YAKUBA (FRUIT 
   AMY_TENMO        ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   O77012           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ERCEPEAE.
   O77011           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ATRIPEX.
   O76284           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA BOCQUETI.
   Q98942           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1.) - GALLUS GALLUS (CHICK
   O18420           AMYREL - DROSOPHILA SUBOBSCURA (FRUIT FLY).
   AMYC_HUMAN       ALPHA-AMYLASE 2B PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN 
   AMYP_HUMAN       ALPHA-AMYLASE, PANCREATIC PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-
   AMYS_HUMAN       ALPHA-AMYLASE, SALIVARY PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-
   O18552           PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA PSEUDOOBSCURA 
   Q26855           ALPHA-AMYLASE II - TRIBOLIUM CASTANEUM (RED FLOUR BEETLE).
   Q26854           ALPHA-AMYLASE I - TRIBOLIUM CASTANEUM (RED FLOUR BEETLE).
   Q26193           PREAMYLASE 1 PRECURSOR - PENAEUS VANNAMEI (PENOEID SHRIMP) (
   Q16924           ALPHA-AMYLASE - AEDES ATROPALPUS (ROCK-POOL MOSQUITO).
   AMY1_AEDAE       ALPHA-AMYLASE I PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   O02413           AMYLASE - AEDES AEGYPTI (YELLOWFEVER MOSQUITO).
   O02652           AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUCAN GLU
   P91778           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_ALTHA        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   P91982           C50B6.7 PROTEIN - CAENORHABDITIS ELEGANS.
   Q52413           ALPHA-AMYLASE PRECURSOR - PSEUDOMONAS SP.
   Q17059           ALPHA-AMYLASE - ANOPHELES MERUS (MOSQUITO).
   Q53633           AMYLASE - STREPTOMYCES ALBUS.
   AMY_STRVL        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_STRGR        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_STRLM        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_STRHY        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   O65947           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   Q59964           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   AMY_STRTL        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   P97179           ALPHA-AMYLASE - STREPTOMYCES LIVIDANS.
   O86876           ALPHA-AMYLASE - STREPTOMYCES LIVIDANS.
   Q52516           MALTOPENTAOSE FORMING AMYLASE PRECURSOR - PSEUDOMONAS SP.
   AMYA_AERHY       ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   Q56791           ALPHA-AMYLASE PRECURSOR - XANTHOMONAS CAMPESTRIS.
   Q03651           ALPHA-AMYLASE TYPE B PRECURSOR - HORDEUM VULGARE (BARLEY).
   AMY2_HORVU       ALPHA-AMYLASE TYPE B ISOZYME PRECURSOR (EC 3.2.1.1) (1,4-ALP
   AMY1_AERHY       ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   Q40015           ALPHA-AMYLASE 1 - HORDEUM VULGARE (BARLEY).
   AM3D_ORYSA       ALPHA-AMYLASE ISOZYME 3D PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   O81699           ALPHA AMYLASE PRECURSOR (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-AL
   Q40016           ALPHA-AMYLASE 1 - HORDEUM VULGARE (BARLEY).
   AMY6_HORVU       ALPHA-AMYLASE TYPE B ISOZYME PRECURSOR (EC 3.2.1.1) (1,4-ALP
   AMY1_ORYSA       ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   Q42504           ALPHA-AMYLASE TYPE A - HORDEUM VULGARE (BARLEY).
   AMY1_HORVU       ALPHA-AMYLASE TYPE A ISOZYME PRECURSOR (EC 3.2.1.1) (1,4-ALP
   O04965           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   Q40017           ALPHA-AMYLASE 2 - HORDEUM VULGARE (BARLEY).
   Q52414           ALPHA-AMYLASE PRECURSOR - PSEUDOMONAS SP.
   AM2A_ORYSA       ALPHA-AMYLASE ISOZYME 2A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   AMC2_ORYSA       ALPHA-AMYLASE ISOZYME C2 PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   O04964           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
 
   Q17023           ALPHA-AMYLASE - ANOPHELES GAMBIAE (AFRICAN MALARIA MOSQUITO)
   AMY_THECU        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   O24781           ALPHA-AMYLASE PRECURSOR - BACILLUS SP.
   Q41770           ALPHA-AMYLASE - ZEA MAYS (MAIZE).
   AMY_BACAM        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   O82953           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) - BACILLUS SUBTILIS.
   O81700           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_BACSU        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   Q45516           ALPHA-AMYLASE - BACILLUS SUBTILIS.
   Q45520           2633 ALPHA-AMYLASE - BACILLUS SUBTILIS.
   AMY_BACLI        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   O82839           AMYLASE - BACILLUS SP.
   P71034           ALPHA-AMYLASE PRECURSOR - BACILLUS SP.
   O31193           ALPHA AMYLASE - BACILLUS STEAROTHERMOPHILUS.
   AMY_BACST        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AM3A_ORYSA       ALPHA-AMYLASE ISOZYME 3A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   AM3E_ORYSA       ALPHA-AMYLASE ISOZYME 3E PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   Q41442           ALPHA-AMYLASE PRECURSOR - SOLANUM TUBEROSUM (POTATO).
   O50582           ALPHA-AMYLASE PRECURSOR - STREPTOCOCCUS BOVIS.
   Q53786           INTRACELLULAR ALPHA-AMYLASE (EC 3.2.1.1) - STREPTOCOCCUS BOV
   AMT4_PSESA       GLUCAN 1,4-ALPHA-MALTOTETRAHYDROLASE PRECURSOR (EC 3.2.1.60)
   AM3B_ORYSA       ALPHA-AMYLASE ISOZYME 3B PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   AMYA_VIGMU       ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_BUTFI        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   Q40018           ALPHA-AMYLASE 2 - HORDEUM VULGARE (BARLEY).
   AMY3_WHEAT       ALPHA-AMYLASE AMY3 PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCA
   O06915           ALPHA-AMYLASE - LACTOBACILLUS PLANTARUM.
   Q48502           ALPHA-AMYLASE - LACTOBACILLUS AMYLOVORUS.
 
   Q61297           PANCREATIC ALPHA AMYLASE ISOZYME - MUS MUSCULUS (MOUSE).
   AMT6_BACS7       GLUCAN 1,4-ALPHA-MALTOHEXAOSIDASE PRECURSOR (EC 3.2.1.98) (G
   Q59222           ALPHA-AMYLASE (EC 3.2.2.1) (PURINE NUCLEOSIDASE) - BACILLUS 
   AMT4_PSEST       GLUCAN 1,4-ALPHA-MALTOTETRAHYDROLASE PRECURSOR (EC 3.2.1.60)
   Q03657           AMYLASE (EC 3.2.1.-) - BACILLUS CIRCULANS.
   AM3C_ORYSA       ALPHA-AMYLASE ISOZYME 3C PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
   O08452           ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
   O33476           ALPHA-AMYLASE PRECURSOR - PYROCOCCUS SP.
   Q60224           ALPHA-AMYLASE PRECURSOR - NATRONOCOCCUS SP.
   AMY2_SALTY       CYTOPLASMIC ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   AMY2_ECOLI       CYTOPLASMIC ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   AMY_ASPSH        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMYB_ASPAW       ALPHA-AMYLASE B PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   AMYA_ASPOR       ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (TAKA-AMYLASE A) (TAA
   AMYA_ASPAW       ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
   Q44062           AMYLASE - AEROMONAS HYDROPHILA.
   AMYM_BACST       MALTOGENIC ALPHA-AMYLASE PRECURSOR (EC 3.2.1.133) (GLUCAN 1,
 
   O46116           ALPHA AMYLASE - DROSOPHILA PSEUDOOBSCURA (FRUIT FLY).
   O68875           INTRACELLULAR A-AMYLASE - STREPTOCOCCUS MUTANS.
   P96107           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY1_ECOLI       ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   Q45574           H-167 G6-AMYLASE GENE PRECURSOR - BACILLUS SP.
   Q03658           EXO-MALTOPENTAOHYDROLASE PRECURSOR (EC 3.2.1.-) (AMYLASE) - 
   O50200           AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUCAN GLU
   P70983           ALKALINE AMYLOPULLULANASE - BACILLUS SP.
   Q45772           OUTER MEMBRANE PROTEIN - BACTEROIDES THETAIOTAOMICRON.
   P96992           AMLC PROTEIN - STREPTOMYCES LIVIDANS.
   CDGT_BACS0       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   CDGT_BACS3       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   Q60102           PERIPLASMIC ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) - XANTHOMON
   CDGT_BACLI       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   CDGT_BACCI       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   MAL1_DROME       POSSIBLE MALTASE D PRECURSOR (EC 3.2.1.20) (LARVAL VISCERAL 
   CDG1_PAEMA       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   O52766           ALPHA-CYCLODEXTRIN GLUCANOTRANSFERASE (EC 2.4.1.19) (CYCLOMA
   CDG2_PAEMA       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   CDGT_BACSS       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   AMYR_BACS8       RAW-STARCH-DIGESTING AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALP
   CDGU_BACCI       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   AMY1_SACFI       ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) - SACCHAROMYCOPSIS FIBU
   Q60051           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   AMY_THETU        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   CDGT_BACSP       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   AMYB_PAEPO       BETA/ALPHA-AMYLASE PRECURSOR [INCLUDES: BETA-AMYLASE (EC 3.2
   Q06812           ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
   CDGT_BACST       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   AMY_BACCI        ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   O53198           MALTASE - MYCOBACTERIUM TUBERCULOSIS.
   Q60027           ALPHA-GLUCOSIDASE (EC 3.2.1.20) (MALTASE) (GLUCOINVERTASE) (
   AMY2_SCHPO       PROBABLE ALPHA-AMYLASE C4A8.01 PRECURSOR (EC 3.2.1.1) (1,4-A
   Q59239           CYCLODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19) (CYC
   O82984           CYCLOMALTODEXTRIN GLUCANOTRANSFERASE - BACILLUS SP.
   O30565           CYCLODEXTRIN GLYCOSYLTRANSFERASE (EC 2.4.1.19) (CYCLOMALTODE
   CDGT_BACS2       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   CDGT_BACOH       CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
   YDD2_SCHPO       HYPOTHETICAL 55.4 KD PROTEIN C1B9.02C IN CHROMOSOME I - SCHI
   GLGX_ECOLI       GLYCOGEN OPERON PROTEIN GLGX (EC 3.2.1.-) - ESCHERICHIA COLI
   Q01117           ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
   O13296           ACID-STABLE ALPHA-AMYLASE - ASPERGILLUS KAWACHII.
   O16099           MALTASE 2 - DROSOPHILA VIRILIS (FRUIT FLY).
   O16098           MALTASE 1 - DROSOPHILA VIRILIS (FRUIT FLY).
   MA1S_YEAST       ALPHA-GLUCOSIDASE MAL1S (EC 3.2.1.20) (MALTASE) - SACCHAROMY
   MA3S_YEAST       ALPHA-GLUCOSIDASE MAL3S (EC 3.2.1.20) (MALTASE) - SACCHAROMY
   MA6S_YEAST       ALPHA-GLUCOSIDASE MAL6S (EC 3.2.1.20) (MALTASE) - SACCHAROMY
   P94451           EXO-ALPHA-1, 4-GLUCOSIDASE - BACILLUS STEAROTHERMOPHILUS.
   O48541           LIMIT DEXTRINASE - HORDEUM VULGARE (BARLEY).
   Q41386           PULLULANASE - SPINACIA OLERACEA (SPINACH).
   P93416           STARCH DEBRANCHING ENZYME PRECURSOR - ORYZA SATIVA (RICE).
   O81638           PULLULANASE-TYPE STARCH DEBRANCHING ENZYME - ZEA MAYS (MAIZE
   O64454           STARCH DEBRANCHING ENZYME - ORYZA SATIVA (RICE).
   AMY1_SCHPO       PROBABLE ALPHA-AMYLASE C23D3.14C PRECURSOR (EC 3.2.1.1) (1,4

SCAN HISTORY OWL11_0 3 150 NSINGLE OWL17_1 1 200 NSINGLE OWL18_0 1 200 NSINGLE OWL19_1 1 275 NSINGLE OWL26_0 1 400 NSINGLE SPTR37_9f 2 250 NSINGLE INITIAL MOTIF SETS ALPHAAMYLASE1 Length of motif = 18 Motif number = 1 Alpha-amylase motif I - 1 PCODE ST INT WWERYQPISYKICSRSGN ALMSS 73 73 WWERYQPVSYKLCTRSGN ALPGP 58 58 WYWLYQPTSYQIGNRYLG ALBS 99 99 WYNMMMGKVDDIAAAGVT ALBH 43 43 WYNFLMGKVDDIAAAGIT ALBHB 42 42 YFEWYTPNDGQHWKRLQN ALBSN 39 39 ALPHAAMYLASE2 Length of motif = 12 Motif number = 2 Alpha-amylase motif II - 1 PCODE ST INT GVRIYVDAVINH ALMSS 105 14 GVRIYVDAVINH ALPGP 90 14 GIKVIVDAVINH ALBS 132 15 GVQAIADIVINH ALBH 106 45 GVKAIADIVINH ALBHB 105 45 NVQVYGDVVLNH ALBSN 123 66 ALPHAAMYLASE3 Length of motif = 12 Motif number = 3 Alpha-amylase motif III - 1 PCODE ST INT VAGFRLDASKHM ALMSS 206 89 VAGFRLDASKHM ALPGP 191 89 ADGFRFDAAKHI ALBS 211 67 FDAWRLDFARGY ALBH 198 80 LDGWRFDFAKGY ALBHB 197 80 LDGFRIDAAKHI ALBSN 256 121 ALPHAAMYLASE4 Length of motif = 19 Motif number = 4 Alpha-amylase motif IV - 1 PCODE ST INT FIFQEVIDLGGEAVSSNEY ALMSS 244 26 FIFQEVIDLGGEAIKSGEY ALPGP 229 26 FQYGEILQDSASRDAAYAN ALBS 245 22 LAVAEVWDNMATGGDGKPN ALBH 225 15 FAVAEIWTSLAYGGDGKPN ALBHB 224 15 FTVAEYWQNNAGKLENYLN ALBSN 288 20 ALPHAAMYLASE5 Length of motif = 13 Motif number = 5 Alpha-amylase motif V - 1 PCODE ST INT DRALVFVDNHDNQ ALMSS 305 42 DRALVFVDNHDNQ ALPGP 290 42 DKLVTWVESHDTY ALBS 300 36 AKAATFVDNHDTG ALBH 305 61 AKAVTFVDNHDTG ALBHB 303 60 EKAVTFVENHDTQ ALBSN 349 42 FINAL MOTIF SETS ALPHAAMYLASE1 Length of motif = 18 Motif number = 1 Alpha-amylase motif I - 2 PCODE ST INT WWERYQPISYKLVTRSGN Q23834 75 75 WWERYQPISYKLVTRSGN O18345 74 74 WWERYQPISYKLDTRSGN Q23932 74 74 WWERYQPISYKLDTRSGN Q27923 74 74 WWERYQPISYKLETRSGN Q27887 74 74 WWERYQPISYKLETRSGN Q27584 74 74 WWERYQPISYKLETRSGN Q27583 74 74 WWERYQPISYKLETRSGN Q27582 74 74 WWERYQPISYKLETRSGN Q24676 74 74 WWERYQPISYKLETRSGN Q24675 74 74 WWERYQPISYKLETRSGN Q24644 74 74 WWERYQPISYKLETRSGN AMYA_DROYA 74 74 WWERYQPISYKLETRSGN AMYA_DROME 74 74 WWERYQPISYKLNTRSGN Q24737 74 74 WWERYQPISYKLETRSGN AMYA_DROMA 74 74 WWERYQPISYKLETRSGN Q24643 74 74 WWERYQPISYKLETRSGN Q24642 74 74 WWERYQPISYKLVTRSGN Q24611 74 74 WWERYQPISYKLVTRSGN Q24610 74 74 WWERYQPISYKICTRSGN AMYP_MOUSE 73 73 WWERYQPISYKLTTRSGN O77017 75 75 WWERYQPISYKLTTRSGN O77016 75 75 WWERYQPISYKLTTRSGN O77014 75 75 WWERYQPISYKLTTRSGN O76265 75 75 WWERYQPISYKLTTRSGN O76261 75 75 WWERYQPISYKLTTRSGN O76260 75 75 WWERYQPISYKLTTRSGN Q27863 74 74 WWERYQPISYKLTTRSGN Q27611 74 74 WWERYQPISYKLTTRSGN O77018 75 75 WWERYQPISYKLITRSGN O18344 75 75 WWERYQPISYKLTTRSGN Q24609 74 74 WWERYQPISYKLTTRSGN Q24613 74 74 WWERYQPISYKLTTRSGN Q27609 74 74 WWERYQPISYKLTTRSGN Q27610 74 74 WWERYQPISYKLTTRSGN Q27612 74 74 WWERYQPISYKLTTRSGN Q27891 74 74 WWERYQPISYRLTTRSGN O77015 75 75 WWERYQPISYKLTTRSGN O77019 76 76 WWERYQPISYKLTTRSGN O77020 76 76 WWERYQPISYKLTTRSGN O76262 76 76 WWERYQPISYKLTTRSGN O76459 76 76 WWERYQPISYKLTTRSGN O77013 76 76 WWERYQPISYKLTTRSGN O77022 76 76 WWERYQPISYKLTTRSGN O77021 76 76 WWERYQPISYQLMTRSGN O77407 74 74 WWERYQPISYKLVTRSGN O76263 74 74 WWERYQPISYKLTTRSGN O18408 75 75 WWERYQPVSYKLCTRSGN AMYP_PIG 58 58 WWERYQPISYKICSRSGN AMYS_MOUSE 73 73 RWERYQPISYKLTSRSGN O76264 75 75 WWERYQPVSYIINTRSGD AMY_TENMO 56 56 WWERYQPISYKLTTRSGD O77012 76 76 WWERYQPISYKLVTRSGN O77011 76 76 WWERYQPISYKLTTRSGN O76284 76 76 WWERYQPISYKICSRSGN Q98942 73 73 WWERYQPISYKLITRSGD O18420 76 76 WWERYQPVSYKLCTRSGN AMYC_HUMAN 73 73 WWERYQPVSYKLCTRSGN AMYP_HUMAN 73 73 WWERYQPVSYKLCTRSGN AMYS_HUMAN 73 73 WWERYQPISYKLITRSGN O18552 76 76 WWERYQPVSYILNTRSGD Q26855 75 75 WWERYQPVSYILNTRSGD Q26854 75 75 WWERYQPVSYKLVTRSGD Q26193 76 76 WWERYQPASYHLNTRSGS Q16924 74 74 WWERYQPISFEIKSRSGN AMY1_AEDAE 314 314 WWERYQPISFEIKSRSGN O02413 314 314 WWERYQPASYHLNTRSGS O02652 74 74 WWERYQPVSYKLQTRSGS P91778 74 74 WWTRYQPVSYELQSRGGN AMY_ALTHA 70 70 WWVRYQPVSYKLDSRSGN P91982 80 80 WWSRYQPVSYAFEGRSGN Q52413 74 74 WWERYQPISFKLDTRSGS Q17059 82 82 WWTSYQPVSYKIAGRLGD Q53633 79 79 WWTSYQPVSYKIAGRLGD AMY_STRVL 78 78 WWTSYQPVSYKIAGRLGD AMY_STRGR 78 78 WWTSYQPVSYKIAGRLGD AMY_STRLM 78 78 WWTSYQPVSYKIAGRLGD AMY_STRHY 80 80 WWTSYQPVSYKIAGPVGD O65947 73 73 WWTSYQPVSYRIAGRLGD Q59964 81 81 WWTSYQPVSYKIAGRLGD AMY_STRTL 79 79 WWTSYQPVSYRIAGRLGD P97179 85 85 WWTSYQPVSYRIAGRLGD O86876 85 85 WWMRYQPVSYSLDRSRSG Q52516 82 82 WWTVYQPVSYKNFNSFGG AMYA_AERHY 70 70 WWARYQPQDIRLIDNPLG Q56791 77 77 WYNFLMGKVDDIAAAGVT Q03651 42 42 WYNFLMGKVDDIAAAGIT AMY2_HORVU 42 42 WWARYQPQDLRLVDSPLG AMY1_AERHY 63 63 WYNFLMGKVDDIAAAGIT Q40015 42 42 WYNMLKGQVDDIAKAGVT AM3D_ORYSA 43 43 WYNMMMGKVDDIAAAGVT O81699 42 42 WYNFLMGKVDDIAAAGIT Q40016 42 42 WYNFLMGKVDDIAAAGVT AMY6_HORVU 42 42 WYNFLMGKVDDIAAAGIT AMY1_ORYSA 43 43 WYNMMMGKVDDIAAAGVT Q42504 42 42 WYNMMMGKVDDIAAAGVT AMY1_HORVU 43 43 WYNMMMGKVDDIAAAGVT O04965 42 42 WYNMMMGKVDDIAAVGVT Q40017 43 43 WWARHQPQDLRVIDSPIG Q52414 65 65 WYNLLMGKVDDIVAAGVT AM2A_ORYSA 40 40 WYNLLMGKVDDIVAAGVT AMC2_ORYSA 40 40 WYNMMLGKVDDIAAAGVT O04964 42 42 ALPHAAMYLASE2 Length of motif = 12 Motif number = 2 Alpha-amylase motif II - 2 PCODE ST INT GVRIYVDVVFNH Q23834 107 14 GVRIYVDVVFNH O18345 106 14 GVRIYVDVVFNH Q23932 106 14 GVRIYVDVVFNH Q27923 106 14 GVRTYVDVVFNH Q27887 106 14 GVRTYVDVVFNH Q27584 106 14 GVRTYVDVVFNH Q27583 106 14 GVRTYVDVVFNH Q27582 106 14 GVRTYVDVVFNH Q24676 106 14 GVRTYVDVVFNH Q24675 106 14 GVRTYVDVVFNH Q24644 106 14 GVRTYVDVVFNH AMYA_DROYA 106 14 GVRTYVDVVFNH AMYA_DROME 106 14 GVRTYVDVVFNH Q24737 106 14 GVRIYVDVIFNH AMYA_DROMA 106 14 GVRIYVDVIFNH Q24643 106 14 GVRIYVDVIFNH Q24642 106 14 GVRIYVDVIFNH Q24611 106 14 GVRIYVDVIFNH Q24610 106 14 GVRIYVDAVINH AMYP_MOUSE 105 14 GVRIYVDVLLNH O77017 107 14 GVRIYVDVLLNH O77016 107 14 GVRIYVDVLLNH O77014 107 14 GVRIYVDVLLNH O76265 107 14 GVRIYVDVLLNH O76261 107 14 GVRIYVDVLLNH O76260 107 14 GVRTYVDVIFNH Q27863 106 14 GVRTYVDVIFNH Q27611 106 14 GVRIYVDVLLNH O77018 107 14 GVRIYVDVLLNH O18344 107 14 GVRTYVDVIFNH Q24609 106 14 GVRTYVDVIFNH Q24613 106 14 GVRTYVDVIFNH Q27609 106 14 GVRTYVDVIFNH Q27610 106 14 GVRTYVDVIFNH Q27612 106 14 GVRTYVDVIFNH Q27891 106 14 GVRIYVDVLLNH O77015 107 14 GIRIYVDVLLNH O77019 108 14 GIRIYVDVLLNH O77020 108 14 GIRIYVDVLLNH O76262 108 14 GIRIYVDVLLNH O76459 108 14 GIRIYVDVLLNH O77013 108 14 GIRIYVDVLLNH O77022 108 14 GIRIYVDVLLNH O77021 108 14 GVRIYVDVVFNH O77407 106 14 GVRIYVDVLLNH O76263 106 14 GVRIYVDVLLNH O18408 107 14 GVRIYVDAVINH AMYP_PIG 90 14 GVRIYVDAVINH AMYS_MOUSE 105 14 GVRIYVDVLLNH O76264 107 14 GVRIYVDAVINH AMY_TENMO 88 14 GIRIYVDVLLNH O77012 108 14 GIRIYVDVLLNH O77011 108 14 GIRIYGDVLLNH O76284 108 14 GVRIYVDAVVNH Q98942 105 14 GVRIYVDVLLNH O18420 108 14 GVRIYVDAVINH AMYC_HUMAN 105 14 GVRIYVDAVINH AMYP_HUMAN 105 14 GVRIYVDAVINH AMYS_HUMAN 105 14 GVRIYVDVLLNH O18552 108 14 GVRIYVDTVINH Q26855 107 14 GVRIYVDTVINH Q26854 107 14 GVRIYVDAVINH Q26193 108 14 GVRIYVDIVINH Q16924 106 14 GVRIYVDVVVNH AMY1_AEDAE 346 14 GVRIYVDVVVNH O02413 346 14 GVRIYVDIVINH O02652 106 14 NVRIYSDTVINH P91778 106 14 GVDIYVDTLINH AMY_ALTHA 102 14 GVRIIVDIVMNH P91982 112 14 GVDIYVDAVINH Q52413 106 14 GVRLYVDIIINH Q17059 114 14 GVKVVVDTVINH Q53633 111 14 GVKVVADSVINH AMY_STRVL 110 14 GVKVVADSVINH AMY_STRGR 110 14 GVKVVADSVINH AMY_STRLM 110 14 GVKVIADAVVNH AMY_STRHY 112 14 GVKVVADTVINH O65947 105 14 GVKVVADAVINH Q59964 113 14 GVKVVVDTVINH AMY_STRTL 111 14 GVKVVADSVVNH P97179 117 14 GVKVVADSVVNH O86876 117 14 GVGIYVDAVINH Q52516 115 15 GVKVYADAVFNH AMYA_AERHY 103 15 GVETYADVVFNH Q56791 110 15 GVKAIADIVINH Q03651 105 45 GVKAIADIVINH AMY2_HORVU 105 45 GIAVYADVVLNH AMY1_AERHY 96 15 GVKAIADIVINH Q40015 105 45 GVQCVADVVINH AM3D_ORYSA 106 45 GVHVIADIVINH O81699 105 45 AVKAIADIVINH Q40016 105 45 AVKAIADIVINH AMY6_HORVU 105 45 GVQVIADIVINH AMY1_ORYSA 106 45 GVQAIADIVINH Q42504 105 45 GVQAIADIVINH AMY1_HORVU 106 45 GVQAITDIVINH O04965 105 45 GVQAIADIVINH Q40017 106 45 GVGVYADVVLNH Q52414 98 15 GIQAIADVVINH AM2A_ORYSA 103 45 GIQAIADVVINH AMC2_ORYSA 103 45 GVQAIADIVINH O04964 105 45 ALPHAAMYLASE3 Length of motif = 12 Motif number = 3 Alpha-amylase motif III - 2 PCODE ST INT VAGFRVDAAKHM Q23834 199 80 VAGFRVDAAKHM O18345 198 80 VAGFRVDAAKHM Q23932 198 80 VAGFRVDAAKHM Q27923 198 80 VAGFRVDAAKHM Q27887 198 80 VAGFRVDAAKHM Q27584 198 80 VAGFRVDAAKHM Q27583 198 80 VAGFRVDAAKHM Q27582 198 80 VAGFRVDAAKHM Q24676 198 80 VAGFRVDAAKHM Q24675 198 80 VAGFRVDAAKHM Q24644 198 80 VAGFRVDAAKHM AMYA_DROYA 198 80 VAGFRVDAAKHM AMYA_DROME 198 80 VAGFRVDAAKHM Q24737 198 80 VAGFRVDAAKHM AMYA_DROMA 198 80 VAGFRVDAAKHM Q24643 198 80 VAGFRVDAAKHM Q24642 198 80 VAGFRVDAAKHM Q24611 198 80 VAGFRVDAAKHM Q24610 198 80 VAGFRLDAAKHM AMYP_MOUSE 203 86 VAGFRVDAAKHM O77017 201 82 VAGFRVDAAKHM O77016 201 82 VAGFRVDAAKHM O77014 201 82 VAGFRVDAAKHM O76265 201 82 VAGFRVDAAKHM O76261 201 82 VAGFRVDAAKHM O76260 201 82 VAGFRVDAAKHM Q27863 198 80 VAGFRVDAAKHM Q27611 198 80 VAGFRVDAAKHM O77018 201 82 VAGFRVDAAKHM O18344 201 82 VAGFRVDAAKHM Q24609 198 80 VAGFRVDAAKHM Q24613 198 80 VAGFRVDAAKHM Q27609 198 80 VAGFRVDAAKHM Q27610 198 80 VAGFRVDAAKHM Q27612 198 80 VAGFRVDAAKHM Q27891 198 80 VAGFRVDAAKHM O77015 201 82 VAGFRVDAAKHM O77019 202 82 VAGFRVDAAKHM O77020 202 82 VAGFRVDAAKHM O76262 202 82 VAGFRVDAAKHM O76459 202 82 VAGFRVDAAKHM O77013 202 82 VAGFRVDAAKHM O77022 202 82 VAGFRVDAAKHM O77021 202 82 VAGFRVDAAKHM O77407 198 80 VAGFRVDAAKHM O76263 200 82 VAGFRVDAAKHM O18408 201 82 VAGFRIDASKHM AMYP_PIG 191 89 VAGFRLDASKHM AMYS_MOUSE 206 89 VAGFRVDAAKHM O76264 201 82 VAGFRVDAAKHM AMY_TENMO 179 79 VAGFRVDAAKHM O77012 202 82 VAGFRVDAAKHM O77011 202 82 VAGFRVDAAKHM O76284 202 82 VAGFRIDAAKHM Q98942 206 89 VAGFRVDAAKHM O18420 202 82 VAGFRLDASKHM AMYC_HUMAN 206 89 VAGFRLDASKHM AMYP_HUMAN 206 89 VAGFRIDASKHM AMYS_HUMAN 206 89 VAGFRVDAAKHM O18552 202 82 VAGFRVDAAKHM Q26855 198 79 VAGFRVDAAKHM Q26854 198 79 VAGFRIDASKHM Q26193 208 88 VAGFRVDAVKHM Q16924 195 77 VAGFRMDACKHM AMY1_AEDAE 441 83 VAGFRMDACKHM O02413 441 83 IAGFRVDAVKHM O02652 195 77 VAGFRIDAAKHM P91778 206 88 VKGFRFDASKHV AMY_ALTHA 192 78 VAGFRHDASKHM P91982 217 93 VAGFRIDAAKHM Q52413 184 66 VAGFRVDAAKHM Q17059 209 83 VDGFRIDAAKHI Q53633 200 77 VDGFRIDAAKHM AMY_STRVL 199 77 VDGFRIDAAKHM AMY_STRGR 199 77 VDGFRIDAAKHM AMY_STRLM 199 77 VDGFRIDAAKHI AMY_STRHY 198 74 VDGFRIDAAKHI O65947 194 77 VDGFRIDAAKHM Q59964 202 77 VDGFRIDAATHI AMY_STRTL 200 77 VDGFRIDAAKHM P97179 206 77 VDGFRIDAAKHM O86876 206 77 VKGLRVDAAKHI Q52516 205 78 VAGFRIDAAKHM AMYA_AERHY 192 77 VTGFRVDAAKHM Q56791 223 101 FDGWRFDFAKGY Q03651 197 80 FDGWRFDFAKGY AMY2_HORVU 197 80 IKGFRVDAVKHM AMY1_AERHY 209 101 LDGWRFDFAKGY Q40015 197 80 FDGWRLDFAKGY AM3D_ORYSA 197 79 FDAWRLDFAKGY O81699 197 80 FDGWRFDFAKGY Q40016 199 82 FDGWRFDFAKGY AMY6_HORVU 199 82 FDAWRLDFAKGY AMY1_ORYSA 197 79 FDAWRLDFARGY Q42504 197 80 FDAWRLDFARGY AMY1_HORVU 198 80 FDAWRLDFARGY O04965 197 80 FDAWRLDFARGY Q40017 198 80 ISGFRIDAVKHM Q52414 211 101 FDAWRLDFARGY AM2A_ORYSA 196 81 FDAWRLDFARGY AMC2_ORYSA 196 81 FDAWRLDFARGY O04964 197 80 ALPHAAMYLASE4 Length of motif = 19 Motif number = 4 Alpha-amylase motif IV - 2 PCODE ST INT YIVQEVIDMGGEAISKSEY Q23834 238 27 YIVQEVIDMGGEAISKSEY O18345 237 27 YIVQEVIDMGGEAISKSEY Q23932 237 27 YIVQEVIDMGGEAISKSEY Q27923 237 27 YIVQEVIDMGGEAISKSEY Q27887 237 27 YIVQEVIDMGGEAISKSEY Q27584 237 27 YIVQEVIDMGGEAISKSEY Q27583 237 27 YIVQEVIDMGGEAISKSEY Q27582 237 27 YIVQEVIDMGGEAISKSEY Q24676 237 27 YIVQEVIDMGGEAISKSEY Q24675 237 27 YIVQEVIDMGGEAISKSEY Q24644 237 27 YIVQEVIDMGGEAISKSEY AMYA_DROYA 237 27 YIVQEVIDMGGEAISKSEY AMYA_DROME 237 27 YIFQEVIDLGGEAISKSEY Q24737 237 27 YIVQEVIDMGGEAISKSEY AMYA_DROMA 237 27 YIVQEVIDMGGEAISKSEY Q24643 237 27 YIVQEVIDMGGEAISKSEY Q24642 237 27 YIVQEVIDMGGEAISKSEY Q24611 237 27 YIVQEVIDMGGEAISKSEY Q24610 237 27 FIFQEVIDLGGEAIKGSEY AMYP_MOUSE 241 26 FIFQEVIDHGHETVSRDEY O77017 240 27 FIFQEVIDHGHETVSRDEY O77016 240 27 FIFQEVIDHGHETVSRDEY O77014 240 27 FIFQEVIDHGHETVSRDEY O76265 240 27 FIFQEVIDHGHETVSRDEY O76261 240 27 FIFQEVIDHGHETVSRDEY O76260 240 27 YIVQEVIDMGGEAISKSEY Q27863 237 27 YIVQEVIDMGGEAISKSEY Q27611 237 27 FIFQEVIDHGHETVSRDEY O77018 240 27 FIFQEVIDHGHETVSREEY O18344 240 27 YIVQEVIDMGGEAISKTEY Q24609 237 27 YIVQEVIDMGGEAISKTEY Q24613 237 27 YIVQEVIDMGGEAISKTEY Q27609 237 27 YIVQEVIDMGGEAISKTEY Q27610 237 27 YIVQEVIDMGGEAISKTEY Q27612 237 27 YIVQEVIDMGGEAISKTEY Q27891 237 27 FIFQEVIDHGHETVSRDEY O77015 240 27 FIFQEVIDHGHETVSREEY O77019 241 27 FIFQEVIDHGHETVSREEY O77020 241 27 FIFQEVIDHGHETVSREEY O76262 241 27 FIFQEVIDHGHETVSREEY O76459 241 27 FIFQEVIDHGHETVSREEY O77013 241 27 FIFQEVIDHGHETVSREEY O77022 241 27 FIFQEVIDHGHETVSRDEY O77021 241 27 FIIQEVIDMGGEAISKFEY O77407 237 27 FIYQEVIDHGHETVTREEY O76263 239 27 FIFQEVIDHGHETDSRDEY O18408 240 27 FIFQEVIDLGGEAIQSSEY AMYP_PIG 229 26 FIFQEVIDLGGEAVSSNEY AMYS_MOUSE 244 26 FIFQEVIDHGHETVSRDEY O76264 240 27 FIYQEVIDLGGEAISKNEY AMY_TENMO 218 27 FIFQEVIDHGHETVSRDEY O77012 241 27 FIFQEVIDHGHETVSREEY O77011 241 27 FIFQEVIDHGHETVSREEY O76284 241 27 FIYQEVIDLGGEPITGSQY Q98942 244 26 FIFQEVIDHGGQEVTREEY O18420 241 27 FIYQEVIDLGGEPIKSSDY AMYC_HUMAN 244 26 FIYQEVIDLGGEPIKSSDY AMYP_HUMAN 244 26 FIYQEVIDLGGEPIKSSDY AMYS_HUMAN 244 26 FIFQEVIDHGGQEVTREEY O18552 241 27 FIFQEVIDLGGEAISKHEY Q26855 237 27 FIFQEVIDLGGEAISKHEY Q26854 237 27 FIFQEVIDLGGEAISSGEY Q26193 246 26 FITQEVIDLGGEAITKYEY Q16924 234 27 FIFQEVIDLGTEGVSAKEY AMY1_AEDAE 480 27 FIFQEVIDLGTEGVSAKEY O02413 480 27 FITQEVIDLGGEAISKYEY O02652 234 27 FIFQEVIDMGGEPISASEY P91778 244 26 VVFQEVIDQGGEAVGASEY AMY_ALTHA 220 16 FAVHEVIDRGGEAVKCGDY P91982 255 26 YIFQEVIGAENEPVKPAEY Q52413 212 16 FLAQEVIDMGAHEVVRKFE Q17059 248 27 YWKQEVIYGAGEAVQPGEY Q53633 229 17 FWKLEAIHGAGEAVSPSEY AMY_STRVL 228 17 YWKQEAIHGAGEAVQPSEY AMY_STRGR 228 17 YWKQEAIHGAGEAVQPSEY AMY_STRLM 228 17 FWVQEVIYGAGEAVRPDEY AMY_STRHY 226 16 YWKQEVIYGAGEAVQPTEY O65947 223 17 SGSPEVIQGGGEAVQPEEY Q59964 230 16 YWKQEVIYGAGEPPKPGEY AMY_STRTL 229 17 YWKHEAIYGAGEAVSPTEY P97179 235 17 YWKHEAIYGSGEAVSPTEY O86876 235 17 FWFLEVIGAPGEAVQPSQY Q52516 238 21 RAYLEVIGAGGESPDIQPG AMYA_AERHY 219 15 YVFGEVITGGGSGNGDYDQ Q56791 252 17 FAVAEIWTSLAYGGDGKPN Q03651 224 15 FAVAEIWTSLAYGGDGKPN AMY2_HORVU 224 15 HVFGEVITTGGAGSTDYER AMY1_AERHY 238 17 FAVAEIWTSLAYGGDGKPN Q40015 224 15 FVVAEIWNSLSYNGDGKPA AM3D_ORYSA 224 15 LAVAEVWDTMQTGGDGKPE O81699 224 15 FAVAEIWTSLAYGGDGKPN Q40016 226 15 FAVAEIWTSLAYGGDGKPN AMY6_HORVU 226 15 FAVAEIWTSMANGGDGKPN AMY1_ORYSA 224 15 LAVAEVWDNMATGGDGKPN Q42504 224 15 LAVAEVWDNMATGGDGKPN AMY1_HORVU 225 15 LAVAEVWDNMATGGDGKPN O04965 224 15 LAVAEVWDNMATGGDGKPN Q40017 225 15 HVFGEVITSGGLGDATYDA Q52414 240 17 LAVAELWDSMAYGGDGKPE AM2A_ORYSA 224 16 LAVAELWDSMAYGGDGKPE AMC2_ORYSA 224 16 LAVAEIWDGMVPGGDGKPN O04964 224 15 ALPHAAMYLASE5 Length of motif = 13 Motif number = 5 Alpha-amylase motif V - 2 PCODE ST INT DRSLVFVDNHDNQ Q23834 297 40 DRSLVFVDNHDNQ O18345 296 40 DRSLVFVDNHDNQ Q23932 296 40 DRSLVFVDNHDNQ Q27923 296 40 DRSLVFVDNHDNQ Q27887 296 40 DRSLVFVDNHDNQ Q27584 296 40 DRSLVFVDNHDNQ Q27583 296 40 DRSLVFVDNHDNQ Q27582 296 40 DRSLVFVDNHDNQ Q24676 296 40 DRSLVFVDNHDNQ Q24675 296 40 DRSLVFVDNHDNQ Q24644 296 40 DRSLVFVDNHDNQ AMYA_DROYA 296 40 DRSLVFVDNHDNQ AMYA_DROME 296 40 DRSLVFVDNHDNQ Q24737 296 40 DRSLVFVDNHDNQ AMYA_DROMA 296 40 DRSLVFVDNHDNQ Q24643 296 40 DRSLVFVDNHDNQ Q24642 296 40 DRSLVFVDNHDNQ Q24611 296 40 DRSLVFVDNHDNQ Q24610 296 40 DRALVFVDNHDNQ AMYP_MOUSE 302 42 GQALTFVDNHDNQ O77017 299 40 GQALTFVDNHDNQ O77016 299 40 GQALTFVDNHDNQ O77014 299 40 GQALTFVDNHDNQ O76265 299 40 GQALTFVDNHDNQ O76261 299 40 GQALTFVDNHDNQ O76260 299 40 DRSLVFVDNHDNQ Q27863 296 40 DRSLVFVDNHDNQ Q27611 296 40 TQALTFVDNHDNQ O77018 299 40 GQALTFVDNHDNQ O18344 299 40 DRSLVFVDNHDNQ Q24609 296 40 DRSLVFVDNHDNQ Q24613 296 40 DRSLVFVDNHDNQ Q27609 296 40 DRSLVFVDNHDNQ Q27610 296 40 DRSLVFVDNHDNQ Q27612 296 40 DRSLVFVDNHDNQ Q27891 296 40 GQALTFVDNHDNQ O77015 299 40 DQALTFVDNHDNQ O77019 300 40 DQALTFVDNHDNQ O77020 300 40 EQALTFVDNHDNQ O76262 300 40 EQALTFVDNHDNQ O76459 300 40 EQALTFVDNHDNQ O77013 300 40 EQALTFVDNHDNQ O77022 300 40 EQALTFVDNHDNQ O77021 300 40 NCSLVFVDNHDNQ O77407 296 40 GQALTFVDNHDNQ O76263 298 40 GQALTFVDNHDSQ O18408 299 40 DRALVFVDNHDNQ AMYP_PIG 290 42 DRALVFVDNHDNQ AMYS_MOUSE 305 42 GQALTFVDNHDNQ O76264 299 40 LDAVVFVDNHDNQ AMY_TENMO 277 40 GQVLTFVDNHDNQ O77012 300 40 GQALTFVDIHDNQ O77011 300 40 EQAFTFVDNHDNQ O76284 300 40 DRALVFVDNHDNQ Q98942 305 42 GQAFTFVDNHDNQ O18420 300 40 DRALVFVDNHDNQ AMYC_HUMAN 305 42 DRALVFVDNHDNQ AMYP_HUMAN 305 42 DRALVFVDNHDNQ AMYS_HUMAN 305 42 GQALTFVDNHVNQ O18552 300 40 LDAVAFIDNHDNQ Q26855 296 40 LDAVAFIDNHDNQ Q26854 296 40 HDALVFIDNHDNQ Q26193 305 40 HLGLVFVDNHDNQ Q16924 293 40 SQALVFVDNHDNQ AMY1_AEDAE 542 43 SQALVFVDNHDNQ O02413 542 43 HLGLAFVDNHDNQ O02652 293 40 NDVVVFIDNHDNQ P91778 303 40 SSAVVFVDNHDNQ AMY_ALTHA 278 39 HDVLNFIDNHDNQ P91982 316 42 SDAVTFVTNHDEE Q52413 270 39 RDAFVFVDNHDNQ Q17059 308 41 TTAGVFVDNHDTE Q53633 287 39 GQSGVFVDNHDTE AMY_STRVL 286 39 GKSAVFVDNHDTE AMY_STRGR 286 39 GKSAVFVDNHDTE AMY_STRLM 286 39 RQARTFVDNWDTE AMY_STRHY 282 37 SVAGVFVDNHDTD O65947 281 39 ASARTFVDNWDTE Q59964 286 37 TTAGVFVDNHDTE AMY_STRTL 287 39 DEAAVFVTNHDTE P97179 293 39 DEAAVFVTNHDTE O86876 293 39 SKAIAFVDNHDKQ Q52516 301 44 NKAFVFVDNHDPE AMYA_AERHY 278 40 NRAVTFAVTHDIP Q56791 318 47 AKAVTFVDNHDTG Q03651 303 60 AKAVTFVDNHDTG AMY2_HORVU 303 60 NRAVTFAITHDIP AMY1_AERHY 304 47 AKAVTFVDNHDTG Q40015 303 60 EKAVTFVDNHDTG AM3D_ORYSA 301 58 AKAVTFVDNHDTG O81699 304 61 AKAVTFVDNHDNG Q40016 305 60 AKAVTFVDNHDTG AMY6_HORVU 305 60 AKATTFVDNHDTG AMY1_ORYSA 304 61 AKAVTFVDNHDTG Q42504 304 61 AKAATFVDNHDTG AMY1_HORVU 305 61 AKAVTFVDNHDTG O04965 304 61 AKAATFVDNHDTG Q40017 305 61 ARAITFTITHDIP Q52414 306 47 AKAVTFVDNHDTG AM2A_ORYSA 304 61 AKAVTFVDNHDTG AMC2_ORYSA 304 61 AKAVTFIDNHDTG O04964 304 61

User query: Display/Full Code "ALPHAAMYLASE"