Contents

  • General
    Security warning
    What's new
    Installation kit
    Installation notes
    Mirrors
    Introduction
    Quick overview

  • CINEMA controls
    Mouse buttons
    Editing the alignment
    File input/output
    Cut, copy and paste
    Editing groups
    Editing motifs
    Editing sequences
    Finding where you are
    Information retrieval
    Colour schemes
    Fonts

  • New look and feel
    New interface
    Split screen
    Hydropathy profiles

  • Extensible architecture
    Pluglets
    The Skeleton pluglet
    The Six-frame pluglet
    The DotPlot pluglet
    The ClustalW pluglet
    Interactive Align pluglet
    The BLAST pluglet

  • Future releases
    Future developments
    Installation kit

  • Bugs
    Known problems

  • Credits
    Authors
    References
    Acknowledgements


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